protocols::splice::RotLibdb Class Reference

#include <SampleRotamersFromPDB.hh>

Inheritance diagram for protocols::splice::RotLibdb:

Public Member Functions
	RotLibdb ()
void	read_profile (std::string const &file_name, std::string const &segment_name)
void	add_segment_fname (std::string const &file_name, std::string const &segment_name)
std::string	get_segment_fname (std::string const &segment_name)
rot_matrix	fill_rotamer_matrix_from_db_file (std::string fname)
void	read_pdb_profile (std::string const &file_name)
rot_matrix	pdb_profile (std::string const &pdb_name)

Private Attributes
std::map< std::string, std::string >	pdb_to_profile_map_
std::string	pdb_names_
std::map< std::string, rot_matrix >	rot_matrix_profile_
std::map< std::string, std::string >	ROTdb_segments_fileName_

Constructor & Destructor Documentation

RotLibdb()

protocols::splice::RotLibdb::RotLibdb

(

)

Member Function Documentation

add_segment_fname()

void protocols::splice::RotLibdb::add_segment_fname	(	std::string const &	file_name,
		std::string const &	segment_name
	)

References ROTdb_segments_fileName_.

fill_rotamer_matrix_from_db_file()

rot_matrix protocols::splice::RotLibdb::fill_rotamer_matrix_from_db_file

(

std::string

fname

)

References protocols::splice::ROT::AA, protocols::splice::ROT::chi_vec, core::conformation::membrane::in, protocols::splice::is_identical_rotamer(), rot(), and protocols::sparta::split().

Referenced by protocols::splice::SampleRotamersFromPDB::combine_rot_dbs(), and read_profile().

get_segment_fname()

std::string protocols::splice::RotLibdb::get_segment_fname

(

std::string const &

segment_name

)

References ROTdb_segments_fileName_.

pdb_profile()

rot_matrix protocols::splice::RotLibdb::pdb_profile

(

std::string const &

pdb_name

)

References pdb_to_profile_map_, and rot_matrix_profile_.

read_pdb_profile()

void protocols::splice::RotLibdb::read_pdb_profile

(

std::string const &

file_name

)

References pdb_to_profile_map_.

read_profile()

void protocols::splice::RotLibdb::read_profile	(	std::string const &	file_name,
		std::string const &	segment_name
	)

References fill_rotamer_matrix_from_db_file(), and rot_matrix_profile_.

Member Data Documentation

pdb_names_

std::string protocols::splice::RotLibdb::pdb_names_

private

pdb_to_profile_map_

std::map< std::string, std::string > protocols::splice::RotLibdb::pdb_to_profile_map_

private

Referenced by pdb_profile(), and read_pdb_profile().

rot_matrix_profile_

std::map< std::string, rot_matrix > protocols::splice::RotLibdb::rot_matrix_profile_

private

Referenced by pdb_profile(), and read_profile().

ROTdb_segments_fileName_

std::map< std::string, std::string > protocols::splice::RotLibdb::ROTdb_segments_fileName_

private

Referenced by add_segment_fname(), and get_segment_fname().

---

The documentation for this class was generated from the following files:

• src/protocols/splice/SampleRotamersFromPDB.hh
• src/protocols/splice/SampleRotamersFromPDB.cc