| align(core::pose::Pose const &stationary_pose, core::Size stationary_residue, core::pose::Pose &mobile_pose, core::Size mobile_residue, core::Size window_width, core::Real tolerance, bool check_alignment=true) const | protocols::pose_sewing::movers::SewAnythingAddMover | |
| alignment_max_distance_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| all_post_filters_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| all_seg_filters_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| allow_DSSP_insertion_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| apply(core::pose::Pose &pose) override | protocols::pose_sewing::movers::SewAnythingAddMover | virtual |
| check_all_backbone_atoms_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| clash_radius_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| clashes(core::pose::Pose const &nterm_pose, core::Size first_nterm_res, core::Size last_nterm_res, core::pose::Pose const &cterm_pose, core::Size first_cterm_res, core::Size last_cterm_res, core::Real clash_radius, bool check_all_backbone) const | protocols::pose_sewing::movers::SewAnythingAddMover | |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::pose_sewing::movers::SewAnythingAddMover | virtual |
| create() | protocols::moves::Mover | virtual |
| current_job_ | protocols::moves::Mover | private |
| current_tag_ | protocols::moves::Mover | private |
| enable_clash_check_v2_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| even_sampling_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| fail_on_no_match_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| find_mod_terminus(core::pose::Pose &pose, std::pair< core::Size, core::Size >) | protocols::pose_sewing::movers::SewAnythingAddMover | |
| find_sewable_region(core::pose::Pose &pose) | protocols::pose_sewing::movers::SewAnythingAddMover | |
| fresh_instance() const override | protocols::pose_sewing::movers::SewAnythingAddMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_clash_radius() const | protocols::pose_sewing::movers::SewAnythingAddMover | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_max_attempts() const | protocols::pose_sewing::movers::SewAnythingAddMover | |
| get_name() const override | protocols::pose_sewing::movers::SewAnythingAddMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_permissible_segment_ends() const | protocols::pose_sewing::movers::SewAnythingAddMover | |
| get_permissible_termini() const | protocols::pose_sewing::movers::SewAnythingAddMover | |
| get_pose_vector() const | protocols::pose_sewing::movers::SewAnythingAddMover | |
| get_segment_file_paths() const | protocols::pose_sewing::movers::SewAnythingAddMover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_trim_terminal_loops() const | protocols::pose_sewing::movers::SewAnythingAddMover | |
| get_type() const | protocols::moves::Mover | inline |
| hashable_element_max_size_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| hashable_element_min_size_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| hashable_element_relative_max_size_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| hashable_element_relative_min_size_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| ht_ref_pose_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| info_ | protocols::moves::Mover | private |
| input_pose_ | protocols::moves::Mover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| last_status_ | protocols::moves::Mover | private |
| max_attempts_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| max_cter_len_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| max_filter_attempts_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| max_nter_len_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::pose_sewing::movers::SewAnythingAddMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| native_pose_ | protocols::moves::Mover | private |
| parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override | protocols::pose_sewing::movers::SewAnythingAddMover | virtual |
| permissible_segment_ends_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| permissible_termini_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| Pose typedef | protocols::moves::Mover | |
| pose_vector_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| PoseCOP typedef | protocols::moves::Mover | |
| positive_scores_are_better_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::pose_sewing::movers::SewAnythingAddMover | static |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| seg_filters_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| segment_file_paths_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| segment_vector_dssp(char mod_terminus, char mod_terminus_dssp, std::string const &permissible_segment_ends) const | protocols::pose_sewing::movers::SewAnythingAddMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_permissible_segment_ends(std::string) | protocols::pose_sewing::movers::SewAnythingAddMover | |
| set_segment_file_paths(utility::vector1< std::string > segment_file_paths) | protocols::pose_sewing::movers::SewAnythingAddMover | |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| SewAnythingAddMover() | protocols::pose_sewing::movers::SewAnythingAddMover | |
| SewAnythingAddMover(SewAnythingAddMover const &src) | protocols::pose_sewing::movers::SewAnythingAddMover | |
| show(std::ostream &output=std::cout) const override | protocols::pose_sewing::movers::SewAnythingAddMover | virtual |
| sort_metric_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| trim_terminal_loops_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| type_ | protocols::moves::Mover | private |
| use_absolute_sizes_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| use_relative_sizes_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| window_width_ | protocols::pose_sewing::movers::SewAnythingAddMover | private |
| ~SewAnythingAddMover() override | protocols::pose_sewing::movers::SewAnythingAddMover | |
