protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker Class Reference

#include <ProteinAtrRepChecker.hh>

Inheritance diagram for protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker:

Public Member Functions
	ProteinAtrRepChecker (core::pose::Pose const &pose, utility::vector1< core::Size > const &moving_res_list)
	~ProteinAtrRepChecker () override
core::Real	delta_atr_score () const
core::Real	delta_rep_score () const
core::Real	base_atr_score () const
core::Real	base_rep_score () const
bool	check_screen (core::pose::Pose &current_pose_screen)

Private Member Functions
void	get_base_atr_rep_score (core::pose::Pose const &pose)
void	initialize_scorefxn ()

Private Attributes
utility::vector1< core::Size > const	moving_res_list_
core::Real	rep_cutoff_
core::Real	atr_cutoff_
core::Real	base_atr_score_
core::Real	base_rep_score_
core::Real	delta_atr_score_
core::Real	delta_rep_score_
core::scoring::ScoreFunctionOP	atr_rep_screening_scorefxn_

Constructor & Destructor Documentation

ProteinAtrRepChecker()

protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::ProteinAtrRepChecker	(	core::pose::Pose const &	pose,
		utility::vector1< core::Size > const &	moving_res_list
	)

References atr_cutoff_, get_base_atr_rep_score(), initialize_scorefxn(), and rep_cutoff_.

~ProteinAtrRepChecker()

protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::~ProteinAtrRepChecker ( )

overridedefault

Member Function Documentation

base_atr_score()

core::Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::base_atr_score ( ) const

inline

References base_atr_score_.

base_rep_score()

core::Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::base_rep_score ( ) const

inline

References base_rep_score_.

check_screen()

bool protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::check_screen

(

core::pose::Pose &

current_pose_screen

)

References atr_cutoff_, atr_rep_screening_scorefxn_, base_atr_score_, base_rep_score_, delta_atr_score_, delta_rep_score_, core::pose::Pose::energies(), core::scoring::fa_atr, core::scoring::fa_rep, rep_cutoff_, and core::scoring::Energies::total_energies().

delta_atr_score()

core::Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::delta_atr_score ( ) const

inline

References delta_atr_score_.

delta_rep_score()

core::Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::delta_rep_score ( ) const

inline

References delta_rep_score_.

get_base_atr_rep_score()

void protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::get_base_atr_rep_score ( core::pose::Pose const &  pose )

private

References atr_rep_screening_scorefxn_, base_atr_score_, base_rep_score_, core::pose::Pose::energies(), core::scoring::fa_atr, core::scoring::fa_rep, moving_res_list_, core::pose::Pose::remove_constraints(), protocols::stepwise::modeler::split_pose(), and core::scoring::Energies::total_energies().

Referenced by ProteinAtrRepChecker().

initialize_scorefxn()

void protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::initialize_scorefxn ( )

private

References atr_rep_screening_scorefxn_, core::scoring::fa_atr, and core::scoring::fa_rep.

Referenced by ProteinAtrRepChecker().

Member Data Documentation

atr_cutoff_

core::Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::atr_cutoff_

private

Referenced by check_screen(), and ProteinAtrRepChecker().

atr_rep_screening_scorefxn_

core::scoring::ScoreFunctionOP protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::atr_rep_screening_scorefxn_

private

Referenced by check_screen(), get_base_atr_rep_score(), and initialize_scorefxn().

base_atr_score_

core::Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::base_atr_score_

private

Referenced by base_atr_score(), check_screen(), and get_base_atr_rep_score().

base_rep_score_

core::Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::base_rep_score_

private

Referenced by base_rep_score(), check_screen(), and get_base_atr_rep_score().

delta_atr_score_

core::Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::delta_atr_score_

private

Referenced by check_screen(), and delta_atr_score().

delta_rep_score_

core::Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::delta_rep_score_

private

Referenced by check_screen(), and delta_rep_score().

moving_res_list_

utility::vector1< core::Size > const protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::moving_res_list_

private

Referenced by get_base_atr_rep_score().

rep_cutoff_

core::Real protocols::stepwise::modeler::protein::checker::ProteinAtrRepChecker::rep_cutoff_

private

Referenced by check_screen(), and ProteinAtrRepChecker().

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/modeler/protein/checker/ProteinAtrRepChecker.hh
• src/protocols/stepwise/modeler/protein/checker/ProteinAtrRepChecker.cc