protocols::denovo_design::task_operations Namespace Reference

Classes
struct	SurroundingSS
class	AAFrequency
class	AAFrequencies
class	ConsensusLoopDatabase
struct	LoopInfo
class	ConsensusLoopDesignOperation
class	ConsensusLoopDesignOperationCreator

Typedefs
typedef utility::pointer::shared_ptr< ConsensusLoopDesignOperation >	ConsensusLoopDesignOperationOP
typedef utility::pointer::shared_ptr< ConsensusLoopDesignOperation const >	ConsensusLoopDesignOperationCOP
typedef utility::pointer::shared_ptr< AAFrequency const >	AAFrequencyOP
typedef utility::pointer::shared_ptr< AAFrequency const >	AAFrequencyCOP
typedef utility::vector1< AAFrequencies >	LoopAAs
typedef utility::vector1< LoopInfo >	LoopInfoVec

Functions
utility::vector1< bool >	make_aa_bitmap_from_forbidden_aas (std::string const &forbidden_aas)
utility::vector1< bool >	make_aa_bitmap_from_allowed_aas (std::string const &allowed_aas)
std::ostream &	operator<< (std::ostream &os, SurroundingSS const &ss)
std::ostream &	operator<< (std::ostream &os, LoopInfo const &info)

Typedef Documentation

AAFrequencyCOP

typedef utility::pointer::shared_ptr< AAFrequency const > protocols::denovo_design::task_operations::AAFrequencyCOP

AAFrequencyOP

typedef utility::pointer::shared_ptr< AAFrequency const > protocols::denovo_design::task_operations::AAFrequencyOP

ConsensusLoopDesignOperationCOP

typedef utility::pointer::shared_ptr< ConsensusLoopDesignOperation const > protocols::denovo_design::task_operations::ConsensusLoopDesignOperationCOP

ConsensusLoopDesignOperationOP

typedef utility::pointer::shared_ptr< ConsensusLoopDesignOperation > protocols::denovo_design::task_operations::ConsensusLoopDesignOperationOP

LoopAAs

typedef utility::vector1< AAFrequencies > protocols::denovo_design::task_operations::LoopAAs

LoopInfoVec

typedef utility::vector1< LoopInfo > protocols::denovo_design::task_operations::LoopInfoVec

Function Documentation

make_aa_bitmap_from_allowed_aas()

utility::vector1< bool > protocols::denovo_design::task_operations::make_aa_bitmap_from_allowed_aas

(

std::string const &

allowed_aas

)

References core::chemical::aa_from_oneletter_code(), and core::chemical::num_canonical_aas.

Referenced by protocols::denovo_design::task_operations::ConsensusLoopDesignOperation::disallow_aas().

make_aa_bitmap_from_forbidden_aas()

utility::vector1< bool > protocols::denovo_design::task_operations::make_aa_bitmap_from_forbidden_aas

(

std::string const &

forbidden_aas

)

References core::chemical::aa_from_oneletter_code(), protocols::denovo_design::task_operations::ConsensusLoopDesignOperation::forbidden_aas(), and core::chemical::num_canonical_aas.

Referenced by protocols::denovo_design::task_operations::ConsensusLoopDesignOperation::disallow_aas().

operator<<() [1/2]

std::ostream & protocols::denovo_design::task_operations::operator<<	(	std::ostream &	os,
		LoopInfo const &	info
	)

References protocols::denovo_design::task_operations::LoopInfo::abego, protocols::denovo_design::task_operations::SurroundingSS::after, protocols::denovo_design::task_operations::SurroundingSS::before, protocols::denovo_design::task_operations::LoopInfo::ss_around, and protocols::denovo_design::task_operations::LoopInfo::startres.

operator<<() [2/2]

std::ostream& protocols::denovo_design::task_operations::operator<<	(	std::ostream &	os,
		SurroundingSS const &	ss
	)