protocols::indexed_structure_store::search::SingleQueryExecutor Class Reference

#include <QueryDatabase.hh>

Public Types
typedef SingleQuerySummaryStatistics	SummaryStatistics
typedef StructureSingleQueryResult	QueryResult
typedef StructureSingleQuery	Query

Public Member Functions
	SingleQueryExecutor (Query const &query)
void	execute (StructureDatabase &database)
void	execute_structure (Index structure_index, StructureData &target_structure)
SearchReal	perform_structure_rmsd (StructureData &target_structure, StructureData::IndexArray &fragment_indicies, StructureData::CoordinateMatrix &fragment_centers_of_mass, Index fragment_index)

Public Attributes
Query	query
Eigen::Matrix< SearchReal, 3, Eigen::Dynamic >	query_coordinate_buffer
Eigen::Matrix< SearchReal, 3, Eigen::Dynamic >	structure_coordinate_buffer
Eigen::Matrix< SearchReal, 3, 1 >	query_coordinate_com
Eigen::Matrix< SearchReal, 3, 1 >	structure_coordinate_com
std::vector< QueryResult >	query_results
SummaryStatistics	query_stats

Member Typedef Documentation

Query

typedef StructureSingleQuery protocols::indexed_structure_store::search::SingleQueryExecutor::Query

QueryResult

typedef StructureSingleQueryResult protocols::indexed_structure_store::search::SingleQueryExecutor::QueryResult

SummaryStatistics

typedef SingleQuerySummaryStatistics protocols::indexed_structure_store::search::SingleQueryExecutor::SummaryStatistics

Constructor & Destructor Documentation

SingleQueryExecutor()

protocols::indexed_structure_store::search::SingleQueryExecutor::SingleQueryExecutor

(

Query const &

query

)

References core::chemical::rings::q, query_coordinate_buffer, query_coordinate_com, and structure_coordinate_buffer.

Member Function Documentation

execute()

void protocols::indexed_structure_store::search::SingleQueryExecutor::execute

(

StructureDatabase &

database

)

References execute_structure(), query_results, query_stats, protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::result_count, and protocols::indexed_structure_store::search::StructureDatabase::structure_data.

Referenced by protocols::indexed_structure_store::search::bind_QueryDatabase(), and protocols::indexed_structure_store::SegmentSequenceProfile::segment_profile().

execute_structure()

void protocols::indexed_structure_store::search::SingleQueryExecutor::execute_structure	(	Index	structure_index,
		StructureData &	target_structure
	)

References core::pose::motif::a(), protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::StructureData::get_fragment_centers_of_mass(), protocols::indexed_structure_store::search::StructureData::get_fragment_indicies(), protocols::indexed_structure_store::search::StructureSingleQuery::n_entry, perform_structure_rmsd(), query, query_results, query_stats, protocols::indexed_structure_store::search::StructureSingleQuery::rmsd_tolerance, protocols::indexed_structure_store::search::StructureData::structure_offset, and protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::structures_considered.

Referenced by protocols::indexed_structure_store::search::bind_QueryDatabase(), and execute().

perform_structure_rmsd()

SearchReal protocols::indexed_structure_store::search::SingleQueryExecutor::perform_structure_rmsd	(	StructureData &	target_structure,
		StructureData::IndexArray &	fragment_indicies,
		StructureData::CoordinateMatrix &	fragment_centers_of_mass,
		Index	fragment_index
	)

References core::pose::motif::a(), protocols::indexed_structure_store::search::StructureSingleQuery::c_per_entry, protocols::indexed_structure_store::search::StructureData::coordinate_buffer, protocols::indexed_structure_store::search::StructureSingleQuery::q_buffer, query, query_coordinate_buffer, query_coordinate_com, structure_coordinate_buffer, and structure_coordinate_com.

Referenced by execute_structure().

Member Data Documentation

query

Query protocols::indexed_structure_store::search::SingleQueryExecutor::query

Referenced by execute_structure(), and perform_structure_rmsd().

query_coordinate_buffer

Eigen::Matrix<SearchReal, 3, Eigen::Dynamic> protocols::indexed_structure_store::search::SingleQueryExecutor::query_coordinate_buffer

Referenced by perform_structure_rmsd(), and SingleQueryExecutor().

query_coordinate_com

Eigen::Matrix<SearchReal, 3, 1> protocols::indexed_structure_store::search::SingleQueryExecutor::query_coordinate_com

Referenced by perform_structure_rmsd(), and SingleQueryExecutor().

query_results

std::vector<QueryResult> protocols::indexed_structure_store::search::SingleQueryExecutor::query_results

Referenced by execute(), execute_structure(), and protocols::indexed_structure_store::SegmentSequenceProfile::segment_profile().

query_stats

SummaryStatistics protocols::indexed_structure_store::search::SingleQueryExecutor::query_stats

Referenced by execute(), execute_structure(), and protocols::indexed_structure_store::SegmentSequenceProfile::segment_profile().

structure_coordinate_buffer

Eigen::Matrix<SearchReal, 3, Eigen::Dynamic> protocols::indexed_structure_store::search::SingleQueryExecutor::structure_coordinate_buffer

Referenced by perform_structure_rmsd(), and SingleQueryExecutor().

structure_coordinate_com

Eigen::Matrix<SearchReal, 3, 1> protocols::indexed_structure_store::search::SingleQueryExecutor::structure_coordinate_com

Referenced by perform_structure_rmsd().

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The documentation for this class was generated from the following files:

• src/protocols/indexed_structure_store/search/QueryDatabase.hh
• src/protocols/indexed_structure_store/search/QueryDatabase.cc