protocols::chemistries::ReprotonateChemistry Class Reference

#include <WrappedChemistries.hh>

Inheritance diagram for protocols::chemistries::ReprotonateChemistry:

Public Member Functions
	ReprotonateChemistry ()
void	parse_my_tag (utility::tag::TagCOP, basic::datacache::DataMap &) override
	Initialize any data members of this instance from an input tag and a DataMap object. More...
Public Member Functions inherited from protocols::chemistries::WrappedBaseChemistry
	WrappedBaseChemistry (std::string const &name, core::chemical::modifications::ChemistryBaseOP subchem=nullptr)
void	apply (core::chemical::MutableResidueType &) override
	Modify the passed ResidueType. More...
void	apply (core::chemical::MutableResidueType &, core::pose::Pose const &) override
	Modify the passed ResidueType, context sensitive. More...
bool	has_additional_output () const override
	Are there alternate ResidueTypes which are availible from the last time we called apply? (That is, will get_addtional_output() return non-null?) More...
core::chemical::MutableResidueTypeOP	get_additional_output () override
	Get additional generated ResidueTypes, if any. This allows for 1-to-many Chemistries. More...
core::chemical::VDVDMapping	get_mapping () const override
	Get the vertex mapping that was used for the last apply() or get_additional_output() This is a mapping FROM the vds in the BEFORE MutableResidueType TO the vds in the AFTER MutableResidueType. The base class implementation defaults to an identity mapping. More...
void	set_subchemistry (core::chemical::modifications::ChemistryBaseOP setting)
Public Member Functions inherited from protocols::chemistries::Chemistry
	Chemistry (std::string const &name)
Public Member Functions inherited from core::chemical::modifications::ChemistryBase
	ChemistryBase (std::string const &name)
std::string	name () const
	Return the name of this Chemistry object. More...
ChemistryStatus	get_last_status () const
	What was the status of the last call to apply()/get_additional_output() More...
void	set_last_status (ChemistryStatus setting)
	Set the status of the chemistry object. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	class_name ()

Constructor & Destructor Documentation

ReprotonateChemistry()

protocols::chemistries::ReprotonateChemistry::ReprotonateChemistry

(

)

References protocols::chemistries::WrappedBaseChemistry::set_subchemistry().

Member Function Documentation

class_name()

std::string protocols::chemistries::ReprotonateChemistry::class_name ( )

static

Referenced by protocols::chemistries::ReprotonateCreator::keyname(), and provide_xml_schema().

parse_my_tag()

void protocols::chemistries::ReprotonateChemistry::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Initialize any data members of this instance from an input tag and a DataMap object.

Implements protocols::chemistries::WrappedBaseChemistry.

provide_xml_schema()

void protocols::chemistries::ReprotonateChemistry::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::chemistries::xsd_type_definition_w_attributes().

Referenced by protocols::chemistries::ReprotonateCreator::provide_xml_schema().

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The documentation for this class was generated from the following files:

• src/protocols/chemistries/WrappedChemistries.hh
• src/protocols/chemistries/WrappedChemistries.cc