protocols::task_operations::RestrictInterGroupVectorOperation Class Reference

#include <RestrictInterGroupVectorOperation.hh>

Inheritance diagram for protocols::task_operations::RestrictInterGroupVectorOperation:

Public Types
typedef core::pack::task::operation::TaskOperation	parent
typedef std::set< core::Size >	one_group
typedef std::pair< one_group, one_group >	group_pair
typedef utility::vector1< group_pair >	group_vector
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	RestrictInterGroupVectorOperation ()
	default constructor More...
	RestrictInterGroupVectorOperation (group_vector const &group, core::Real CB_dist_cutoff, core::Real nearby_atom_cutoff, core::Real vector_angle_cutoff, core::Real vector_dist_cutoff)
	full constructor More...
	RestrictInterGroupVectorOperation (group_pair const &one_group, core::Real CB_dist_cutoff, core::Real nearby_atom_cutoff, core::Real vector_angle_cutoff, core::Real vector_dist_cutoff)
	~RestrictInterGroupVectorOperation () override
	destructor More...
core::pack::task::operation::TaskOperationOP	clone () const override
	make clone More...
void	apply (Pose const &pose, core::pack::task::PackerTask &task) const override
	parse_tag More...
void	insert_pair (group_pair pair)
	setters for member data More...
void	CB_dist_cutoff (core::Real CB_dist_cutoff)
void	nearby_atom_cutoff (core::Real nearby_atom_cutoff)
void	vector_angle_cutoff (core::Real vector_angle_cutoff)
void	vector_dist_cutoff (core::Real vector_dist_cutoff)
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	parse_tag (TagCOP, DataMap &)
	Used to parse an xml-like tag to load parameters and properties. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
group_vector	pair_vector_
core::Real	CB_dist_cutoff_
core::Real	nearby_atom_cutoff_
core::Real	vector_angle_cutoff_
core::Real	vector_dist_cutoff_

Member Typedef Documentation

group_pair

typedef std::pair< one_group, one_group > protocols::task_operations::RestrictInterGroupVectorOperation::group_pair

group_vector

typedef utility::vector1< group_pair > protocols::task_operations::RestrictInterGroupVectorOperation::group_vector

one_group

typedef std::set< core::Size > protocols::task_operations::RestrictInterGroupVectorOperation::one_group

parent

typedef core::pack::task::operation::TaskOperation protocols::task_operations::RestrictInterGroupVectorOperation::parent

Constructor & Destructor Documentation

RestrictInterGroupVectorOperation() [1/3]

protocols::task_operations::RestrictInterGroupVectorOperation::RestrictInterGroupVectorOperation

(

)

default constructor

RestrictInterGroupVectorOperation() [2/3]

protocols::task_operations::RestrictInterGroupVectorOperation::RestrictInterGroupVectorOperation	(	group_vector const &	group,
		core::Real	CB_dist_cutoff,
		core::Real	nearby_atom_cutoff,
		core::Real	vector_angle_cutoff,
		core::Real	vector_dist_cutoff
	)

full constructor

RestrictInterGroupVectorOperation() [3/3]

protocols::task_operations::RestrictInterGroupVectorOperation::RestrictInterGroupVectorOperation	(	group_pair const &	one_group,
		core::Real	CB_dist_cutoff,
		core::Real	nearby_atom_cutoff,
		core::Real	vector_angle_cutoff,
		core::Real	vector_dist_cutoff
	)

References pair_vector_.

~RestrictInterGroupVectorOperation()

protocols::task_operations::RestrictInterGroupVectorOperation::~RestrictInterGroupVectorOperation ( )

overridedefault

destructor

Member Function Documentation

apply()

void protocols::task_operations::RestrictInterGroupVectorOperation::apply ( Pose const &  pose, core::pack::task::PackerTask &  task  ) const

overridevirtual

parse_tag

apply

apply function, uses inherited functionality

Implements core::pack::task::operation::TaskOperation.

References core::select::util::calc_interacting_vector(), CB_dist_cutoff_, nearby_atom_cutoff_, pair_vector_, protocols::antibody::design::repack, core::pack::task::PackerTask::restrict_to_residues(), core::pose::Pose::size(), vector_angle_cutoff_, and vector_dist_cutoff_.

CB_dist_cutoff()

void protocols::task_operations::RestrictInterGroupVectorOperation::CB_dist_cutoff

(

core::Real

CB_dist_cutoff

)

References CB_dist_cutoff_.

clone()

core::pack::task::operation::TaskOperationOP protocols::task_operations::RestrictInterGroupVectorOperation::clone ( ) const

overridevirtual

make clone

be warned if you use clone that you'll not get a new interface calculator

Implements core::pack::task::operation::TaskOperation.

insert_pair()

void protocols::task_operations::RestrictInterGroupVectorOperation::insert_pair

(

group_pair

pair

)

setters for member data

setters

References core::scoring::pair, and pair_vector_.

keyname()

static std::string protocols::task_operations::RestrictInterGroupVectorOperation::keyname ( )

inlinestatic

Referenced by protocols::task_operations::RestrictInterGroupVectorOperationCreator::keyname(), and provide_xml_schema().

nearby_atom_cutoff()

void protocols::task_operations::RestrictInterGroupVectorOperation::nearby_atom_cutoff

(

core::Real

nearby_atom_cutoff

)

References nearby_atom_cutoff_.

provide_xml_schema()

void protocols::task_operations::RestrictInterGroupVectorOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_empty().

Referenced by protocols::task_operations::RestrictInterGroupVectorOperationCreator::provide_xml_schema().

vector_angle_cutoff()

void protocols::task_operations::RestrictInterGroupVectorOperation::vector_angle_cutoff

(

core::Real

vector_angle_cutoff

)

References vector_angle_cutoff_.

vector_dist_cutoff()

void protocols::task_operations::RestrictInterGroupVectorOperation::vector_dist_cutoff

(

core::Real

vector_dist_cutoff

)

References vector_dist_cutoff_.

Member Data Documentation

CB_dist_cutoff_

core::Real protocols::task_operations::RestrictInterGroupVectorOperation::CB_dist_cutoff_

private

Referenced by apply(), and CB_dist_cutoff().

nearby_atom_cutoff_

core::Real protocols::task_operations::RestrictInterGroupVectorOperation::nearby_atom_cutoff_

private

Referenced by apply(), and nearby_atom_cutoff().

pair_vector_

group_vector protocols::task_operations::RestrictInterGroupVectorOperation::pair_vector_

private

Referenced by apply(), insert_pair(), and RestrictInterGroupVectorOperation().

vector_angle_cutoff_

core::Real protocols::task_operations::RestrictInterGroupVectorOperation::vector_angle_cutoff_

private

Referenced by apply(), and vector_angle_cutoff().

vector_dist_cutoff_

core::Real protocols::task_operations::RestrictInterGroupVectorOperation::vector_dist_cutoff_

private

Referenced by apply(), and vector_dist_cutoff().

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The documentation for this class was generated from the following files:

• src/protocols/task_operations/RestrictInterGroupVectorOperation.hh
• src/protocols/task_operations/RestrictInterGroupVectorOperation.cc