PerResidueEsmProbabilitiesMetric.cc File Reference

A class for predicting amino acid probabilities P(Sequence|Sequence) using the ESM language model. More...

#include <protocols/esm_perplexity/PerResidueEsmProbabilitiesMetric.hh>
#include <protocols/esm_perplexity/PerResidueEsmProbabilitiesMetricCreator.hh>
#include <protocols/esm_perplexity/EsmPerplexityTensorflowProtocol.hh>
#include <core/simple_metrics/util.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <core/pose/Pose.hh>
#include <basic/datacache/DataMap.hh>
#include <utility>
#include <utility/tag/Tag.hh>
#include <utility/string_util.hh>
#include <utility/pointer/memory.hh>
#include <utility/tag/XMLSchemaGeneration.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::esm_perplexity

Functions
static basic::Tracer	TR ("protocols.esm_perplexity.PerResidueEsmProbabilitiesMetric")

Detailed Description

A class for predicting amino acid probabilities P(Sequence|Sequence) using the ESM language model.

Author

Moritz Ertelt (morit.nosp@m.z.er.nosp@m.telt@.nosp@m.goog.nosp@m.lemai.nosp@m.l.co.nosp@m.m)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.esm_perplexity.PerResidueEsmProbabilitiesMetric"  )

static