GlycopeptideDockingLowResRefinement.cc File Reference

#include <protocols/glycopeptide_docking/GlycopeptideDockingLowResRefinement.hh>
#include <protocols/glycopeptide_docking/GlycopeptideDockingFlags.hh>
#include <protocols/glycopeptide_docking/utils.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <core/pose/Pose.hh>
#include <core/types.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/kinematics/FoldTree.hh>
#include <basic/Tracer.hh>
#include <utility/pointer/owning_ptr.hh>
#include <string>
#include <cmath>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::glycopeptide_docking

Functions
static basic::Tracer	TR ("protocols.glycopeptide_docking.GlycopeptideDockingLowResRefinement")
std::ostream &	protocols::glycopeptide_docking::operator<< (std::ostream &os, GlycopeptideDockingLowResRefinement const &mover)

Detailed Description

Low resolution refinement of glycosyltransferase peptide/glycopeptide substrate complex. This protocol allows enhanced sampling of the peptide/glycopeptide dofs in the low resolution mode with simulated annealing. Current protocol was only tested for monosaccharides. It does not treat the glycan-branch in a special manner. This behavior will change as the protocol is developed in future versions for higher glycans. Protocol similar to low resolution refinement of flexpepdock.

Author

Yashes Srinivasan (yashe.nosp@m.ss@g.nosp@m.mail..nosp@m.com), Sai Pooja Mahajan (saipo.nosp@m.oja@.nosp@m.gmail.nosp@m..com)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.glycopeptide_docking.GlycopeptideDockingLowResRefinement"  )

static