#include <StepWiseBasicWorkingParameters.hh>

Inheritance diagram for protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters:

Public Member Functions
	StepWiseBasicWorkingParameters ()

	~StepWiseBasicWorkingParameters () override

std::string const &	sequence () const

void	set_sequence (std::string const &setting)

std::string const &	full_sequence () const

void	set_full_sequence (std::string const &setting)

std::string const &	working_sequence () const

core::Size const &	moving_res () const

void	set_moving_res (core::Size const &setting)

core::Size const &	working_moving_res () const

core::Size const &	working_moving_suite () const

core::Size	actually_moving_res () const

utility::vector1< core::Size >	working_res_list () const

utility::vector1< core::Size > const &	working_moving_res_list () const

void	set_working_moving_res_list (utility::vector1< core::Size > const &setting)

utility::vector1< core::Size > const &	working_moving_suite_list () const

utility::vector1< core::Size > const &	is_working_res () const

void	set_is_working_res (utility::vector1< core::Size > const &setting)

std::map< core::Size, core::Size > &	full_to_sub ()

void	set_full_to_sub (std::map< core::Size, core::Size > const &setting)

std::map< core::Size, core::Size > &	sub_to_full ()

std::map< core::Size, core::Size > const &	const_full_to_sub () const

std::map< core::Size, core::Size > const &	const_sub_to_full () const

core::Size	full_to_sub (core::Size const i) const

core::Size	sub_to_full (core::Size const i) const

utility::vector1< core::Size >	apply_full_to_sub_mapping (utility::vector1< core::Size > const &res_vector)

core::Size	apply_full_to_sub_mapping (core::Size const res) const

std::map< core::Size, core::Size >	create_sub_to_full_map (std::map< core::Size, core::Size > const &full_to_sub) const

utility::vector1< core::Size > const &	cutpoint_closed_list () const

void	set_cutpoint_closed_list (utility::vector1< core::Size > const &setting)

utility::vector1< core::Size > const &	cutpoint_open_list () const

void	set_cutpoint_open_list (utility::vector1< core::Size > const &setting)

utility::vector1< std::pair< core::Size, core::Size > > const &	chain_boundaries () const

void	set_chain_boundaries (utility::vector1< std::pair< core::Size, core::Size > > const &setting)

ObjexxFCL::FArray1D< bool > const &	partition_definition () const

void	set_partition_definition (ObjexxFCL::FArray1D< bool > const &setting)

void	set_partition_definition (utility::vector1< core::Size > const &partition_definition_vector)

bool const &	is_prepend () const

void	set_is_prepend (bool const &setting)

bool const &	is_internal () const

void	set_is_internal (bool const &setting)

core::Size const &	gap_size () const

void	set_gap_size (core::Size const &setting)

utility::vector1< core::Size > const &	fixed_res () const

void	set_fixed_res (utility::vector1< core::Size > const &fixed_res)

utility::vector1< core::Size > const &	working_fixed_res () const

void	set_working_fixed_res (utility::vector1< core::Size > const &working_fixed_res)

utility::vector1< core::Size > const &	calc_rms_res () const

void	set_calc_rms_res (utility::vector1< core::Size > const &calc_rms_res)

utility::vector1< core::Size > const &	working_calc_rms_res () const

void	set_working_calc_rms_res (utility::vector1< core::Size > const &working_calc_rms_res)

utility::vector1< core::Size > const &	working_moving_partition_res () const

void	set_working_moving_partition_res (utility::vector1< core::Size > const &working_moving_partition_res)

core::pose::PoseCOP	working_native_pose () const

void	set_working_native_pose (core::pose::PoseOP &pose)

void	set_working_native_pose (core::pose::PoseCOP pose)

Protected Attributes
std::string	full_sequence_

std::string	working_sequence_

core::Size	moving_res_

core::Size	working_moving_res_

core::Size	working_moving_suite_

utility::vector1< core::Size >	working_moving_res_list_

utility::vector1< core::Size >	working_moving_suite_list_

utility::vector1< core::Size >	is_working_res_

std::map< core::Size, core::Size >	full_to_sub_

std::map< core::Size, core::Size >	sub_to_full_

utility::vector1< core::Size >	cutpoint_closed_list_

utility::vector1< core::Size >	cutpoint_open_list_

utility::vector1< std::pair< core::Size, core::Size > >	chain_boundaries_

ObjexxFCL::FArray1D< bool >	partition_definition_

bool	is_prepend_

bool	is_internal_

core::Size	gap_size_

core::pose::PoseCOP	working_native_pose_

utility::vector1< core::Size >	fixed_res_

utility::vector1< core::Size >	working_fixed_res_

utility::vector1< core::Size >	calc_rms_res_

utility::vector1< core::Size >	working_calc_rms_res_

utility::vector1< core::Size >	working_moving_partition_res_

Private Member Functions
void	update_working_moving_suite ()

void	update_working_sequence ()

Constructor & Destructor Documentation

◆ StepWiseBasicWorkingParameters()

protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::StepWiseBasicWorkingParameters ( )

◆ ~StepWiseBasicWorkingParameters()

protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::~StepWiseBasicWorkingParameters ( )

overridedefault

Member Function Documentation

◆ actually_moving_res()

Size protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::actually_moving_res ( ) const

References is_prepend_, and working_moving_suite_list_.

◆ apply_full_to_sub_mapping() [1/2]

Size protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::apply_full_to_sub_mapping ( core::Size const res ) const

References full_to_sub_.

◆ apply_full_to_sub_mapping() [2/2]

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::apply_full_to_sub_mapping ( utility::vector1< core::Size > const & res_vector )

References full_to_sub_, and is_working_res_.

◆ calc_rms_res()

utility::vector1< core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::calc_rms_res ( ) const

inline

References calc_rms_res_.

Referenced by set_calc_rms_res().

◆ chain_boundaries()

utility::vector1< std::pair< core::Size, core::Size > > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::chain_boundaries ( ) const

inline

References chain_boundaries_.

◆ const_full_to_sub()

std::map< core::Size, core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::const_full_to_sub ( ) const

inline

References full_to_sub_.

◆ const_sub_to_full()

std::map< core::Size, core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::const_sub_to_full ( ) const

inline

References sub_to_full_.

◆ create_sub_to_full_map()

std::map< core::Size, core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::create_sub_to_full_map ( std::map< core::Size, core::Size > const & full_to_sub ) const

References full_to_sub(), and sub_to_full().

Referenced by set_full_to_sub().

◆ cutpoint_closed_list()

utility::vector1< core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::cutpoint_closed_list ( ) const

inline

References cutpoint_closed_list_.

◆ cutpoint_open_list()

utility::vector1< core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::cutpoint_open_list ( ) const

inline

References cutpoint_open_list_.

◆ fixed_res()

utility::vector1< core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::fixed_res ( ) const

inline

References fixed_res_.

Referenced by set_fixed_res().

◆ full_sequence()

std::string const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_sequence ( ) const

inline

References full_sequence_.

Referenced by protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::is_pre_proline(), and sequence().

◆ full_to_sub() [1/2]

std::map< core::Size, core::Size >& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_to_sub ( )

inline

References full_to_sub_.

Referenced by create_sub_to_full_map().

◆ full_to_sub() [2/2]

core::Size protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_to_sub ( core::Size const i ) const

inline

References full_to_sub_.

◆ gap_size()

core::Size const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::gap_size ( ) const

inline

References gap_size_.

◆ is_internal()

bool const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_internal ( ) const

inline

References is_internal_.

◆ is_prepend()

bool const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_prepend ( ) const

inline

References is_prepend_.

◆ is_working_res()

utility::vector1< core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_working_res ( ) const

inline

References is_working_res_.

◆ moving_res()

core::Size const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::moving_res ( ) const

inline

References moving_res_.

◆ partition_definition()

ObjexxFCL::FArray1D< bool > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::partition_definition ( ) const

inline

References partition_definition_.

◆ sequence()

std::string const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::sequence ( ) const

inline

References full_sequence().

Referenced by protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::is_pre_proline().

◆ set_calc_rms_res()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_calc_rms_res ( utility::vector1< core::Size > const & calc_rms_res )

inline

References calc_rms_res(), and calc_rms_res_.

◆ set_chain_boundaries()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_chain_boundaries ( utility::vector1< std::pair< core::Size, core::Size > > const & setting )

inline

References chain_boundaries_.

◆ set_cutpoint_closed_list()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_cutpoint_closed_list ( utility::vector1< core::Size > const & setting )

inline

References cutpoint_closed_list_.

◆ set_cutpoint_open_list()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_cutpoint_open_list ( utility::vector1< core::Size > const & setting )

inline

References cutpoint_open_list_.

◆ set_fixed_res()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_fixed_res ( utility::vector1< core::Size > const & fixed_res )

inline

References fixed_res(), and fixed_res_.

◆ set_full_sequence()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_full_sequence ( std::string const & setting )

inline

References full_sequence_, and update_working_sequence().

Referenced by set_sequence().

◆ set_full_to_sub()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_full_to_sub ( std::map< core::Size, core::Size > const & setting )

References create_sub_to_full_map(), full_to_sub_, and sub_to_full_.

◆ set_gap_size()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_gap_size ( core::Size const & setting )

inline

References gap_size_.

◆ set_is_internal()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_is_internal ( bool const & setting )

inline

References is_internal_.

◆ set_is_prepend()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_is_prepend ( bool const & setting )

inline

References is_prepend_, and update_working_moving_suite().

◆ set_is_working_res()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_is_working_res ( utility::vector1< core::Size > const & setting )

inline

References is_working_res_, and update_working_sequence().

◆ set_moving_res()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_moving_res ( core::Size const & setting )

inline

References moving_res_.

◆ set_partition_definition() [1/2]

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_partition_definition ( ObjexxFCL::FArray1D< bool > const & setting )

inline

References partition_definition_.

◆ set_partition_definition() [2/2]

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_partition_definition ( utility::vector1< core::Size > const & partition_definition_vector )

References partition_definition_.

◆ set_sequence()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_sequence ( std::string const & setting )

inline

References set_full_sequence().

◆ set_working_calc_rms_res()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_calc_rms_res ( utility::vector1< core::Size > const & working_calc_rms_res )

inline

References working_calc_rms_res(), and working_calc_rms_res_.

◆ set_working_fixed_res()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_fixed_res ( utility::vector1< core::Size > const & working_fixed_res )

inline

References working_fixed_res(), and working_fixed_res_.

◆ set_working_moving_partition_res()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_moving_partition_res ( utility::vector1< core::Size > const & working_moving_partition_res )

inline

References working_moving_partition_res(), and working_moving_partition_res_.

◆ set_working_moving_res_list()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_moving_res_list ( utility::vector1< core::Size > const & setting )

References update_working_moving_suite(), working_moving_res_, and working_moving_res_list_.

◆ set_working_native_pose() [1/2]

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_native_pose ( core::pose::PoseCOP pose )

References working_native_pose_.

◆ set_working_native_pose() [2/2]

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::set_working_native_pose ( core::pose::PoseOP & pose )

References working_native_pose_.

◆ sub_to_full() [1/2]

std::map< core::Size, core::Size >& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::sub_to_full ( )

inline

References sub_to_full_.

Referenced by create_sub_to_full_map().

◆ sub_to_full() [2/2]

core::Size protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::sub_to_full ( core::Size const i ) const

inline

References sub_to_full_.

◆ update_working_moving_suite()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::update_working_moving_suite ( )

private

References is_prepend_, working_moving_res_, working_moving_res_list_, working_moving_suite_, and working_moving_suite_list_.

Referenced by set_is_prepend(), and set_working_moving_res_list().

◆ update_working_sequence()

void protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::update_working_sequence ( )

private

References full_sequence_, is_working_res_, and working_sequence_.

Referenced by set_full_sequence(), and set_is_working_res().

◆ working_calc_rms_res()

utility::vector1< core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_calc_rms_res ( ) const

inline

References working_calc_rms_res_.

Referenced by set_working_calc_rms_res().

◆ working_fixed_res()

utility::vector1< core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_fixed_res ( ) const

inline

References working_fixed_res_.

Referenced by set_working_fixed_res().

◆ working_moving_partition_res()

utility::vector1< core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_partition_res ( ) const

inline

References working_moving_partition_res_.

Referenced by set_working_moving_partition_res().

◆ working_moving_res()

core::Size const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_res ( ) const

inline

References working_moving_res_.

◆ working_moving_res_list()

utility::vector1< core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_res_list ( ) const

inline

References working_moving_res_list_.

◆ working_moving_suite()

core::Size const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_suite ( ) const

inline

References working_moving_suite_.

◆ working_moving_suite_list()

utility::vector1< core::Size > const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_suite_list ( ) const

inline

References working_moving_suite_list_.

◆ working_native_pose()

core::pose::PoseCOP protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_native_pose ( ) const

References working_native_pose_.

◆ working_res_list()

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_res_list ( ) const

References sub_to_full_.

Referenced by protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::is_pre_proline().

◆ working_sequence()

std::string const& protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_sequence ( ) const

inline

References working_sequence_.

Member Data Documentation

◆ calc_rms_res_

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::calc_rms_res_

protected

Referenced by calc_rms_res(), and set_calc_rms_res().

◆ chain_boundaries_

utility::vector1< std::pair< core::Size, core::Size > > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::chain_boundaries_

protected

Referenced by chain_boundaries(), and set_chain_boundaries().

◆ cutpoint_closed_list_

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::cutpoint_closed_list_

protected

Referenced by cutpoint_closed_list(), and set_cutpoint_closed_list().

◆ cutpoint_open_list_

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::cutpoint_open_list_

protected

Referenced by cutpoint_open_list(), protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::gap_size_to_anchor(), and set_cutpoint_open_list().

◆ fixed_res_

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::fixed_res_

protected

Referenced by fixed_res(), and set_fixed_res().

◆ full_sequence_

std::string protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_sequence_

protected

Referenced by full_sequence(), set_full_sequence(), and update_working_sequence().

◆ full_to_sub_

std::map< core::Size, core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::full_to_sub_

protected

Referenced by apply_full_to_sub_mapping(), const_full_to_sub(), full_to_sub(), set_full_to_sub(), and protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_floating_base_anchor_res().

◆ gap_size_

core::Size protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::gap_size_

protected

Referenced by gap_size(), and set_gap_size().

◆ is_internal_

bool protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_internal_

protected

Referenced by is_internal(), and set_is_internal().

◆ is_prepend_

bool protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_prepend_

protected

Referenced by actually_moving_res(), is_prepend(), set_is_prepend(), update_working_moving_suite(), and protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_reference_res().

◆ is_working_res_

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::is_working_res_

protected

Referenced by apply_full_to_sub_mapping(), is_working_res(), set_is_working_res(), update_working_sequence(), and protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_floating_base_anchor_res().

◆ moving_res_

core::Size protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::moving_res_

protected

Referenced by protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::gap_size_to_anchor(), moving_res(), and set_moving_res().

◆ partition_definition_

ObjexxFCL::FArray1D< bool > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::partition_definition_

protected

Referenced by partition_definition(), and set_partition_definition().

◆ sub_to_full_

std::map< core::Size, core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::sub_to_full_

protected

Referenced by const_sub_to_full(), protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::gap_size_to_anchor(), set_full_to_sub(), sub_to_full(), and working_res_list().

◆ working_calc_rms_res_

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_calc_rms_res_

protected

Referenced by set_working_calc_rms_res(), and working_calc_rms_res().

◆ working_fixed_res_

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_fixed_res_

protected

Referenced by set_working_fixed_res(), and working_fixed_res().

◆ working_moving_partition_res_

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_partition_res_

protected

Referenced by set_working_moving_partition_res(), and working_moving_partition_res().

◆ working_moving_res_

core::Size protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_res_

protected

Referenced by protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::actually_moving_res(), set_working_moving_res_list(), update_working_moving_suite(), working_moving_res(), and protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_reference_res().

◆ working_moving_res_list_

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_res_list_

protected

Referenced by set_working_moving_res_list(), update_working_moving_suite(), working_moving_res_list(), and protocols::stepwise::modeler::working_parameters::StepWiseWorkingParameters::working_reference_res().

◆ working_moving_suite_

core::Size protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_suite_

protected

Referenced by update_working_moving_suite(), and working_moving_suite().

◆ working_moving_suite_list_

utility::vector1< core::Size > protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_moving_suite_list_

protected

Referenced by actually_moving_res(), update_working_moving_suite(), and working_moving_suite_list().

◆ working_native_pose_

core::pose::PoseCOP protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_native_pose_

protected

Referenced by set_working_native_pose(), and working_native_pose().

◆ working_sequence_

std::string protocols::stepwise::modeler::working_parameters::StepWiseBasicWorkingParameters::working_sequence_

protected

Referenced by update_working_sequence(), and working_sequence().

The documentation for this class was generated from the following files:

src/protocols/stepwise/modeler/working_parameters/StepWiseBasicWorkingParameters.hh
src/protocols/stepwise/modeler/working_parameters/StepWiseBasicWorkingParameters.cc

Public Member Functions

Protected Attributes

Private Member Functions

Constructor & Destructor Documentation

◆ StepWiseBasicWorkingParameters()

◆ ~StepWiseBasicWorkingParameters()

Member Function Documentation

◆ actually_moving_res()

◆ apply_full_to_sub_mapping() [1/2]

◆ apply_full_to_sub_mapping() [2/2]

◆ calc_rms_res()

◆ chain_boundaries()

◆ const_full_to_sub()

◆ const_sub_to_full()

◆ create_sub_to_full_map()

◆ cutpoint_closed_list()

◆ cutpoint_open_list()

◆ fixed_res()

◆ full_sequence()

◆ full_to_sub() [1/2]

◆ full_to_sub() [2/2]

◆ gap_size()

◆ is_internal()

◆ is_prepend()

◆ is_working_res()

◆ moving_res()

◆ partition_definition()

◆ sequence()

◆ set_calc_rms_res()

◆ set_chain_boundaries()

◆ set_cutpoint_closed_list()

◆ set_cutpoint_open_list()

◆ set_fixed_res()

◆ set_full_sequence()

◆ set_full_to_sub()

◆ set_gap_size()

◆ set_is_internal()

◆ set_is_prepend()

◆ set_is_working_res()

◆ set_moving_res()

◆ set_partition_definition() [1/2]

◆ set_partition_definition() [2/2]

◆ set_sequence()

◆ set_working_calc_rms_res()

◆ set_working_fixed_res()

◆ set_working_moving_partition_res()

◆ set_working_moving_res_list()

◆ set_working_native_pose() [1/2]

◆ set_working_native_pose() [2/2]

◆ sub_to_full() [1/2]

◆ sub_to_full() [2/2]

◆ update_working_moving_suite()

◆ update_working_sequence()

◆ working_calc_rms_res()

◆ working_fixed_res()

◆ working_moving_partition_res()

◆ working_moving_res()

◆ working_moving_res_list()

◆ working_moving_suite()

◆ working_moving_suite_list()

◆ working_native_pose()

◆ working_res_list()

◆ working_sequence()

Member Data Documentation

◆ calc_rms_res_

◆ chain_boundaries_

◆ cutpoint_closed_list_

◆ cutpoint_open_list_

◆ fixed_res_

◆ full_sequence_

◆ full_to_sub_

◆ gap_size_

◆ is_internal_

◆ is_prepend_

◆ is_working_res_

◆ moving_res_

◆ partition_definition_

◆ sub_to_full_

◆ working_calc_rms_res_

◆ working_fixed_res_