#include <SapConstraintOptions.hh>

Inheritance diagram for core::pack::guidance_scoreterms::sap::SapConstraintOptions:

Public Member Functions
	SapConstraintOptions ()

SapConstraintOptionsOP	clone () const

void	sap_goal (Real goal)

void	sap_lb_goal (Real lb_goal)

void	packing_correction (Real adjustment)

void	penalty_per_sap (Real penalty)

void	full_accuracy_when_scoring (bool full_accuracy)

void	name (std::string const &name)

SapParameterOptions &	sap_parameter_options ()

SapParameterOptions const &	sap_parameter_options () const

void	score_selector (select::residue_selector::ResidueSelectorCOP const &sel)

void	sap_calculate_selector (select::residue_selector::ResidueSelectorCOP const &sel)

void	sasa_selector (select::residue_selector::ResidueSelectorCOP const &sel)

void	fast (bool fast)

void	lightning (bool lightning)

Real	sap_goal () const

Real	sap_lb_goal () const

Real	packing_correction () const

Real	penalty_per_sap () const

bool	full_accuracy_when_scoring () const

std::string	name () const

select::residue_selector::ResidueSelectorCOP	score_selector () const

select::residue_selector::ResidueSelectorCOP	sap_calculate_selector () const

select::residue_selector::ResidueSelectorCOP	sasa_selector () const

bool	fast () const

bool	lightning () const

Real	transform_sap_to_score (Real score, bool approximate) const

void	sanity_check () const

Constructor & Destructor Documentation

◆ SapConstraintOptions()

core::pack::guidance_scoreterms::sap::SapConstraintOptions::SapConstraintOptions ( )

Member Function Documentation

◆ clone()

SapConstraintOptionsOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::clone ( ) const

◆ fast() [1/2]

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::fast ( ) const

References fast_, and lightning_.

Referenced by fast().

◆ fast() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::fast ( bool fast )

References fast(), and fast_.

◆ full_accuracy_when_scoring() [1/2]

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::full_accuracy_when_scoring ( ) const

References full_accuracy_when_scoring_.

◆ full_accuracy_when_scoring() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::full_accuracy_when_scoring ( bool full_accuracy )

References full_accuracy_when_scoring_.

◆ lightning() [1/2]

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::lightning ( ) const

References lightning_.

Referenced by lightning().

◆ lightning() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::lightning ( bool lightning )

References lightning(), and lightning_.

◆ name() [1/2]

std::string core::pack::guidance_scoreterms::sap::SapConstraintOptions::name ( ) const

References name_.

Referenced by name().

◆ name() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::name ( std::string const & name )

References name(), and name_.

◆ packing_correction() [1/2]

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::packing_correction ( ) const

References packing_correction_.

Referenced by transform_sap_to_score().

◆ packing_correction() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::packing_correction ( Real adjustment )

References packing_correction_.

◆ penalty_per_sap() [1/2]

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::penalty_per_sap ( ) const

References penalty_per_sap_.

Referenced by transform_sap_to_score().

◆ penalty_per_sap() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::penalty_per_sap ( Real penalty )

References penalty_per_sap_.

◆ sanity_check()

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sanity_check ( ) const

References sap_goal(), and sap_lb_goal().

◆ sap_calculate_selector() [1/2]

select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_calculate_selector ( ) const

References sap_calculate_selector_, and score_selector_.

◆ sap_calculate_selector() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_calculate_selector ( select::residue_selector::ResidueSelectorCOP const & sel )

References sap_calculate_selector_.

◆ sap_goal() [1/2]

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_goal ( ) const

References sap_goal_.

Referenced by sanity_check(), and transform_sap_to_score().

◆ sap_goal() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_goal ( Real goal )

References sap_goal_.

◆ sap_lb_goal() [1/2]

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_lb_goal ( ) const

References sap_lb_goal_.

Referenced by sanity_check(), and transform_sap_to_score().

◆ sap_lb_goal() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_lb_goal ( Real lb_goal )

References sap_lb_goal_.

◆ sap_parameter_options() [1/2]

SapParameterOptions & core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_parameter_options ( )

References sap_parameter_options_.

◆ sap_parameter_options() [2/2]

SapParameterOptions const & core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_parameter_options ( ) const

References sap_parameter_options_.

◆ sasa_selector() [1/2]

select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sasa_selector ( ) const

References sap_calculate_selector_, sasa_selector_, and score_selector_.

◆ sasa_selector() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sasa_selector ( select::residue_selector::ResidueSelectorCOP const & sel )

References sasa_selector_.

◆ score_selector() [1/2]

select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::score_selector ( ) const

References score_selector_.

◆ score_selector() [2/2]

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::score_selector ( select::residue_selector::ResidueSelectorCOP const & sel )

References score_selector_.

◆ transform_sap_to_score()

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::transform_sap_to_score	(	Real	score,
		bool	approximate
	)		const

References packing_correction(), penalty_per_sap(), sap_goal(), sap_lb_goal(), and protocols::hybridization::score.

Member Data Documentation

◆ fast_

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::fast_

private

Referenced by fast().

◆ full_accuracy_when_scoring_

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::full_accuracy_when_scoring_

private

Referenced by full_accuracy_when_scoring().

◆ lightning_

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::lightning_

private

Referenced by fast(), and lightning().

◆ name_

std::string core::pack::guidance_scoreterms::sap::SapConstraintOptions::name_

private

Referenced by name().

◆ packing_correction_

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::packing_correction_

private

Referenced by packing_correction().

◆ penalty_per_sap_

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::penalty_per_sap_

private

Referenced by penalty_per_sap().

◆ sap_calculate_selector_

core::select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_calculate_selector_

private

Referenced by sap_calculate_selector(), and sasa_selector().

◆ sap_goal_

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_goal_

private

Referenced by sap_goal().

◆ sap_lb_goal_

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_lb_goal_

private

Referenced by sap_lb_goal().

◆ sap_parameter_options_

SapParameterOptions core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_parameter_options_

private

Referenced by sap_parameter_options().

◆ sasa_selector_

core::select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sasa_selector_

private

Referenced by sasa_selector().

◆ score_selector_

core::select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::score_selector_

private

Referenced by sap_calculate_selector(), sasa_selector(), and score_selector().

The documentation for this class was generated from the following files:

src/core/pack/guidance_scoreterms/sap/SapConstraintOptions.hh
src/core/pack/guidance_scoreterms/sap/SapConstraintOptions.cc

Private Attributes
Real	sap_goal_

Real	sap_lb_goal_

Real	packing_correction_

Real	penalty_per_sap_

core::select::residue_selector::ResidueSelectorCOP	score_selector_

core::select::residue_selector::ResidueSelectorCOP	sap_calculate_selector_

core::select::residue_selector::ResidueSelectorCOP	sasa_selector_

bool	fast_

bool	lightning_

bool	full_accuracy_when_scoring_

std::string	name_

SapParameterOptions	sap_parameter_options_

Public Member Functions

Private Attributes

Constructor & Destructor Documentation

◆ SapConstraintOptions()

Member Function Documentation

◆ clone()

◆ fast() [1/2]

◆ fast() [2/2]

◆ full_accuracy_when_scoring() [1/2]

◆ full_accuracy_when_scoring() [2/2]

◆ lightning() [1/2]

◆ lightning() [2/2]

◆ name() [1/2]

◆ name() [2/2]

◆ packing_correction() [1/2]

◆ packing_correction() [2/2]

◆ penalty_per_sap() [1/2]

◆ penalty_per_sap() [2/2]

◆ sanity_check()

◆ sap_calculate_selector() [1/2]

◆ sap_calculate_selector() [2/2]

◆ sap_goal() [1/2]

◆ sap_goal() [2/2]

◆ sap_lb_goal() [1/2]

◆ sap_lb_goal() [2/2]

◆ sap_parameter_options() [1/2]

◆ sap_parameter_options() [2/2]

◆ sasa_selector() [1/2]

◆ sasa_selector() [2/2]

◆ score_selector() [1/2]

◆ score_selector() [2/2]

◆ transform_sap_to_score()

Member Data Documentation

◆ fast_

◆ full_accuracy_when_scoring_

◆ lightning_

◆ name_

◆ packing_correction_

◆ penalty_per_sap_

◆ sap_calculate_selector_

◆ sap_goal_

◆ sap_lb_goal_

◆ sap_parameter_options_

◆ sasa_selector_

◆ score_selector_