protocols::rotamer_recovery::RRComparerElecDensDiff Class Reference

#include <RRComparerElecDensDiff.hh>

Inheritance diagram for protocols::rotamer_recovery::RRComparerElecDensDiff:

Public Member Functions
	RRComparerElecDensDiff ()
	~RRComparerElecDensDiff () override
	RRComparerElecDensDiff (RRComparerElecDensDiff const &)
std::string	get_name () const override
std::string	get_parameters () const override
bool	measure_rotamer_recovery (core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::Real &score, bool &recovered) override
void	set_recovery_threshold (core::Real const recovery_threshold) override
virtual core::Real	get_recovery_threshold () const
void	set_absolute_threshold (core::Real const absolute_threshold) override
virtual core::Real	get_absolute_threshold () const
Public Member Functions inherited from protocols::rotamer_recovery::RRComparer
	~RRComparer () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
virtual void	parse_attributes_from_tag (utility::tag::TagCOP tag)

Private Attributes
core::Real	recovery_threshold_
core::Real	absolute_threshold_

Constructor & Destructor Documentation

RRComparerElecDensDiff() [1/2]

protocols::rotamer_recovery::RRComparerElecDensDiff::RRComparerElecDensDiff

(

)

~RRComparerElecDensDiff()

protocols::rotamer_recovery::RRComparerElecDensDiff::~RRComparerElecDensDiff ( )

overridedefault

RRComparerElecDensDiff() [2/2]

protocols::rotamer_recovery::RRComparerElecDensDiff::RRComparerElecDensDiff

(

RRComparerElecDensDiff const &

src

)

Member Function Documentation

get_absolute_threshold()

Real protocols::rotamer_recovery::RRComparerElecDensDiff::get_absolute_threshold ( ) const

virtual

References absolute_threshold_.

get_name()

string protocols::rotamer_recovery::RRComparerElecDensDiff::get_name ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

get_parameters()

string protocols::rotamer_recovery::RRComparerElecDensDiff::get_parameters ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

get_recovery_threshold()

Real protocols::rotamer_recovery::RRComparerElecDensDiff::get_recovery_threshold ( ) const

virtual

References recovery_threshold_.

measure_rotamer_recovery()

bool protocols::rotamer_recovery::RRComparerElecDensDiff::measure_rotamer_recovery ( core::pose::Pose const &  pose1, core::pose::Pose const &  pose2, core::conformation::Residue const &  res1, core::conformation::Residue const &  res2, core::Real &  score, bool &  recovered  )

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

References core::conformation::Residue::aa(), absolute_threshold_, core::scoring::fa_atr, core::scoring::electron_density::getDensityMap(), core::scoring::electron_density::ElectronDensity::matchRes(), core::chemical::ResidueTypeBase::name(), core::conformation::Residue::name(), core::conformation::Residue::name3(), core::conformation::Residue::nheavyatoms(), core::chemical::num_canonical_aas, recovery_threshold_, protocols::hybridization::score, core::conformation::Residue::seqpos(), core::scoring::electron_density::ElectronDensity::set_nres(), core::scoring::electron_density::ElectronDensity::setScoreWindowContext(), core::scoring::electron_density::ElectronDensity::setWindow(), core::pose::Pose::size(), protocols::rotamer_recovery::TR(), and core::conformation::Residue::type().

set_absolute_threshold()

void protocols::rotamer_recovery::RRComparerElecDensDiff::set_absolute_threshold ( core::Real const  absolute_threshold )

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

References absolute_threshold_.

set_recovery_threshold()

void protocols::rotamer_recovery::RRComparerElecDensDiff::set_recovery_threshold ( core::Real const  recovery_threshold )

overridevirtual

Implements protocols::rotamer_recovery::RRComparer.

References recovery_threshold_.

Member Data Documentation

absolute_threshold_

core::Real protocols::rotamer_recovery::RRComparerElecDensDiff::absolute_threshold_

private

Referenced by get_absolute_threshold(), measure_rotamer_recovery(), and set_absolute_threshold().

recovery_threshold_

core::Real protocols::rotamer_recovery::RRComparerElecDensDiff::recovery_threshold_

private

Referenced by get_recovery_threshold(), measure_rotamer_recovery(), and set_recovery_threshold().

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRComparerElecDensDiff.hh
• src/protocols/rotamer_recovery/RRComparerElecDensDiff.cc