Rosetta

scoring → chemical Relation

File in src/core/scoringIncludes file in src/core/chemical
aa_composition_energy / AACompositionEnergySetup.hhResidueProperty.hh
aa_composition_energy / AACompositionEnergySetup.hhResidueType.hh
constraints / AmbiguousNMRDistanceConstraint.ccAA.hh
constraints / AmbiguousNMRDistanceConstraint.ccResidueType.hh
constraints / AmbiguousNMRDistanceConstraint.hhAA.hh
constraints / AmbiguousNMRDistanceConstraint.hhResidueType.hh
constraints / AngleConstraint.ccResidueType.hh
APBSWrapper.ccResidueType.hh
atomic_depth / AtomicDepth.ccAtomType.hh
atomic_depth / AtomicDepth.ccAtomTypeSet.hh
atomic_depth / AtomicDepth.hhAtomTypeSet.fwd.hh
constraints / AtomPairConstraint.ccResidueType.hh
AtomVDW.ccAtomType.hh
AtomVDW.ccAtomTypeSet.hh
AtomVDW.ccChemicalManager.hh
AtomVDW.hhAtomTypeSet.fwd.hh
constraints / BackboneStubConstraint.ccChemicalManager.hh
constraints / BackboneStubConstraint.ccResidueType.fwd.hh
constraints / BackboneStubConstraint.ccResidueTypeSet.hh
constraints / BackboneStubLinearConstraint.ccChemicalManager.hh
constraints / BackboneStubLinearConstraint.ccResidueType.fwd.hh
constraints / BackboneStubLinearConstraint.ccResidueTypeSet.hh
dna / base_geometry.ccAA.hh
dna / base_geometry.ccResidueType.hh
dna / base_geometry.hhResidueType.fwd.hh
etable / BaseEtableEnergy.tmpl.hhAtomType.hh
constraints / BasePairConstraint.ccResidueType.hh
constraints / BasePairConstraint.ccrna / RNA_Info.hh
constraints / BasePairConstraint.ccrna / util.hh
constraints / BasePairConstraint.hhrna / util.hh
constraints / BigBinConstraint.ccResidueType.hh
methods / branch_energy_util.ccResidueType.hh
carbon_hbonds / CarbonHBondPotential.ccAtomTypeSet.hh
carbon_hbonds / CarbonHBondPotential.ccChemicalManager.hh
CenRotEnvPairPotential.ccAA.hh
disulfides / CentroidDisulfideEnergyContainer.ccResidueConnection.hh
disulfides / CentroidDisulfideEnergyContainer.ccResidueType.hh
disulfides / CentroidDisulfideEnergyContainer.ccVariantType.hh
disulfides / CentroidDisulfideEnergyContainer.hhResidueType.fwd.hh
disulfides / CentroidDisulfidePotential.ccChemicalManager.hh
disulfides / CentroidDisulfidePotential.ccResidueTypeSet.hh
methods / chainbreak_util.ccVariantType.hh
constraints / ConstraintIO.ccResidueType.hh
etable / count_pair / CountPairFactory.ccResidueConnection.hh
etable / count_pair / CountPairGeneric.ccResidueConnection.hh
etable / count_pair / CountPairGeneric.hhResidueType.fwd.hh
elec / CountPairRepresentative.hhResidueType.fwd.hh
geometric_solvation / DatabaseOccSolEne.ccAtomType.hh
geometric_solvation / DatabaseOccSolEne.ccAtomTypeSet.hh
geometric_solvation / DatabaseOccSolEne.ccChemicalManager.hh
geometric_solvation / DatabaseOccSolEne.hhAtomTypeSet.fwd.hh
interface_ / DDPlookup.hhAA.hh
dna / DirectReadoutPotential.ccAA.hh
disulfides / DisulfideAtomIndices.ccResidueType.hh
disulfides / DisulfideMatchingEnergyContainer.ccResidueConnection.hh
disulfides / DisulfideMatchingEnergyContainer.ccResidueType.hh
disulfides / DisulfideMatchingEnergyContainer.ccVariantType.hh
disulfides / DisulfideMatchingEnergyContainer.hhResidueType.fwd.hh
dna / DNA_BasePotential.ccAA.hh
dna / DNA_EnvPairPotential.ccAA.hh
dna / DNA_EnvPairPotential.hhAA.hh
dna / DNABFormPotential.ccAA.hh
dna / DNATorsionPotential.ccAA.hh
electron_density / ElectronDensity.ccAtomType.hh
electron_density / ElectronDensity.ccAtomTypeSet.hh
electron_density_atomwise / ElectronDensityAtomwise.ccAtomType.hh
electron_density_atomwise / ElectronDensityAtomwise.ccAtomTypeSet.hh
Energies.ccResidueType.hh
methods / EnergyMethodOptions.ccChemicalManager.fwd.hh
methods / EnergyMethodOptions.hhAA.hh
EnvPairPotential.ccAA.hh
EnvPairPotential.ccVariantType.hh
etable / Etable.ccAtomType.hh
etable / Etable.ccutil.hh
etable / Etable.hhAtomTypeSet.hh
etable / EtableEnergy.ccVariantType.hh
elec / FA_ElecEnergy.ccRestypeDestructionEvent.hh
elec / FA_ElecEnergy.hhAtomType.hh
elec / FA_ElecEnergy.hhResidueType.fwd.hh
elec / FA_ElecEnergy.hhRestypeDestructionEvent.fwd.hh
constraints / FabConstraint.ccResidueType.hh
facts / FACTSPotential.ccAA.hh
facts / FACTSResidue.ccAA.hh
facts / FACTSResidue.ccAtomType.hh
facts / FACTSResidue.ccAtomTypeSet.hh
facts / FACTSResidue.ccChemicalManager.hh
facts / FACTSResidue.ccresidue_io.hh
facts / FACTSResidue.ccResidueTypeSet.fwd.hh
facts / FACTSResidue.ccRestypeDestructionEvent.hh
facts / FACTSResidue.hhResidueType.fwd.hh
facts / FACTSResidue.hhRestypeDestructionEvent.fwd.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.ccChemicalManager.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.ccResidueType.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.ccResidueTypeFinder.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.ccResidueTypeSet.fwd.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.ccRestypeDestructionEvent.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.hhResidueType.fwd.hh
custom_pair_distance / FullatomCustomPairDistanceEnergy.hhRestypeDestructionEvent.fwd.hh
disulfides / FullatomDisulfideEnergyContainer.ccResidueConnection.hh
disulfides / FullatomDisulfideEnergyContainer.ccResidueType.hh
disulfides / FullatomDisulfideEnergyContainer.ccVariantType.hh
disulfides / FullatomDisulfideEnergyContainer.hhResidueType.fwd.hh
GenBornPotential.ccAtomTypeSet.hh
GenBornPotential.ccResidueTypeSet.hh
GenBornPotential.ccVariantType.hh
GenericBondedPotential.ccAA.hh
GenericBondedPotential.ccAtomTypeSet.hh
GenericBondedPotential.ccChemicalManager.hh
GenericBondedPotential.ccResidueConnection.hh
GenericBondedPotential.ccResidueTypeSet.hh
GenericBondedPotential.ccVariantType.hh
GenericBondedPotential.hhBond.fwd.hh
GenericBondedPotential.hhResidueType.fwd.hh
geometric_solvation / GeometricSolEnergyEvaluator.cctypes.hh
geometric_solvation / GeometricSolEnergyEvaluator.ccrna / util.hh
elec / GroupElec.ccChemicalManager.hh
elec / GroupElec.ccResidueTypeSet.hh
elec / GroupElec.hhResidueType.fwd.hh
hbonds / HBondEnergy.ccAtomType.hh
hbonds / HBondEnergy.ccAtomTypeSet.hh
hbonds / hbonds_geom.ccAtomType.hh
hbonds / hbonds_geom.ccAtomTypeSet.hh
hbonds / hbonds_geom.ccrna / RNA_Info.hh
hbonds / hbonds_geom.hhtypes.hh
hbonds / HBondTypeManager.cctypes.hh
hbonds / HBondTypeManager.hhtypes.hh
packing / HolesParams.hhAtomTypeSet.hh
packing / HolesParams.hhChemicalManager.hh
HydroxylTorsionPotential.ccChemicalManager.hh
HydroxylTorsionPotential.ccResidueTypeSet.hh
HydroxylTorsionPotential.hhResidueType.fwd.hh
lddt.ccautomorphism.hh
lddt.hhResidueType.fwd.hh
sasa / LeGrandSasa.ccAtomType.hh
sasa / LeGrandSasa.ccAtomTypeSet.hh
lkball / LK_BallEnergy.ccAtomType.hh
lkball / LK_BallInfo.ccAtomType.hh
lkball / LK_BallInfo.ccAtomTypeSet.hh
lkball / LK_BallInfo.ccRestypeDestructionEvent.hh
lkball / LK_BallInfo.cctypes.hh
lkball / LK_BallInfo.hhResidueType.fwd.hh
lkball / LK_BallInfo.hhRestypeDestructionEvent.fwd.hh
lkball / LK_DomeEnergy.hhResidueType.hh
lkball / LK_DomeInfo.hhResidueType.fwd.hh
lkball / LK_DomeInfo.hhRestypeDestructionEvent.fwd.hh
loop_graph / LoopGraph.ccVariantType.hh
memb_etable / MembEtable.ccAtomType.hh
memb_etable / MembEtable.hhAtomTypeSet.fwd.hh
MembranePotential.ccAA.hh
MembranePotential.ccVariantType.hh
magnesium / MgKnowledgeBasedPotential.hhrna / RNA_FittedTorsionInfo.hh
methods / MMBondAngleEnergy.ccAtomType.hh
methods / MMBondAngleEnergy.ccResidueConnection.hh
methods / MMBondAngleEnergy.ccResidueType.hh
methods / MMBondAngleEnergy.hhResidueType.fwd.hh
mm / MMBondAngleLibrary.ccMMAtomType.hh
mm / MMBondAngleLibrary.ccMMAtomTypeSet.fwd.hh
mm / MMBondAngleLibrary.ccMMAtomTypeSet.hh
mm / MMBondAngleLibrary.hhMMAtomTypeSet.fwd.hh
mm / MMBondAngleResidueTypeParam.ccResidueConnection.hh
mm / MMBondAngleResidueTypeParam.ccResidueType.hh
mm / MMBondAngleResidueTypeParam.hhResidueType.fwd.hh
mm / MMBondAngleResidueTypeParamSet.ccResidueConnection.hh
mm / MMBondAngleResidueTypeParamSet.ccResidueType.hh
mm / MMBondAngleResidueTypeParamSet.hhResidueType.fwd.hh
methods / MMBondLengthEnergy.ccAtomType.hh
methods / MMBondLengthEnergy.ccResidueConnection.hh
methods / MMBondLengthEnergy.ccResidueType.hh
mm / MMBondLengthLibrary.ccMMAtomType.hh
mm / MMBondLengthLibrary.ccMMAtomTypeSet.fwd.hh
mm / MMBondLengthLibrary.ccMMAtomTypeSet.hh
mm / MMBondLengthLibrary.hhMMAtomTypeSet.fwd.hh
methods / MMLJEnergyInter.ccResidueType.hh
methods / MMLJEnergyIntra.ccResidueType.hh
mm / MMLJLibrary.ccMMAtomType.hh
mm / MMLJLibrary.ccMMAtomTypeSet.hh
mm / MMLJLibrary.hhMMAtomTypeSet.hh
methods / MMTorsionEnergy.ccResidueConnection.hh
methods / MMTorsionEnergy.ccResidueType.hh
mm / MMTorsionLibrary.ccMMAtomType.hh
mm / MMTorsionLibrary.ccMMAtomTypeSet.fwd.hh
mm / MMTorsionLibrary.ccMMAtomTypeSet.hh
mm / MMTorsionLibrary.hhMMAtomTypeSet.fwd.hh
motif / motif_hash_stuff.ccChemicalManager.fwd.hh
motif / motif_hash_stuff.ccResidueTypeSet.hh
membrane / MPNonHelixPenalty.ccAA.hh
membrane / MPTerminiPenalty.ccAA.hh
MultipoleElecPotential.ccAtomTypeSet.hh
nmer / NMerPSSMEnergy.ccAA.hh
nmer / NMerPSSMEnergy.hhAA.hh
nmer / NMerSVMEnergy.ccAA.hh
nmr / NMRDummySpinlabelEnsemble.ccResidueType.hh
nmr / NMRDummySpinlabelEnsemble.hhResidueType.fwd.hh
nmr / NMRSpinlabel.ccChemicalManager.hh
nmr / NMRSpinlabel.ccResidueType.hh
nmr / NMRSpinlabel.ccResidueTypeSet.hh
nmr / NMRSpinlabel.hhResidueType.fwd.hh
nv / NVlookup.hhAA.hh
nv / NVscore.ccAA.hh
OmegaTether.hhAA.hh
orbitals / OrbitalsLookup.ccorbitals / OrbitalTypeMapper.hh
orbitals / OrbitalsScore.ccAtomType.hh
orbitals / OrbitalsScore.ccorbitals / OrbitalTypeMapper.fwd.hh
orbitals / OrbitalsScore.hhorbitals / OrbitalTypeMapper.fwd.hh
orbitals / OrbitalsStatistics.ccorbitals / OrbitalType.hh
P_AA.hhAA.hh
P_AA_ABEGO3.hhAA.hh
P_AA_ss.hhAA.hh
PairEPotential.ccAA.hh
PointWaterPotential.ccAA.hh
PointWaterPotential.hhAA.hh
PoissonBoltzmannPotential.ccResidueType.hh
power_diagram / PowerDiagram.ccAtomTypeSet.hh
ProQPotential.ccAA.hh
Ramachandran.ccAA.hh
Ramachandran.hhAA.hh
Ramachandran2B.hhAA.hh
RamaPrePro.ccChemicalManager.hh
RamaPrePro.ccmainchain_potential / MainchainScoreTable.hh
RamaPrePro.ccResidueTypeSet.hh
RamaPrePro.hhAA.hh
RamaPrePro.hhmainchain_potential / MainchainScoreTable.fwd.hh
RamaPrePro.hhResidueType.fwd.hh
constraints / ResidueTypeLinkingConstraint.ccAA.hh
constraints / ResidueTypeLinkingConstraint.hhAA.hh
rms_util.ccautomorphism.hh
rna / RNA_AtomVDW.ccAA.hh
rna / RNA_AtomVDW.ccResidueType.hh
rna / RNA_AtomVDW.hhResidueType.fwd.hh
rna / RNA_CentroidInfo.ccrna / util.hh
rna / chemical_shift / RNA_ChemicalShiftPotential.ccrna / util.hh
rna / chemical_shift / RNA_ChemicalShiftPotential.hhAA.hh
rna / chemical_shift / RNA_CS_Parameters.hhAA.hh
rna / chemical_shift / RNA_CS_Util.ccAA.hh
rna / data / RNA_DMS_Potential.ccResidueTypeSet.hh
rna / RNA_LowResolutionPotential.ccAA.hh
rna / RNA_LowResolutionPotential.ccChemicalManager.hh
rna / RNA_LowResolutionPotential.ccResidueTypeSet.hh
rna / RNA_LowResolutionPotential.hhAA.hh
rna / RNA_LowResolutionPotential.hhResidueTypeSet.fwd.hh
rna / RNA_SuitePotential.ccrna / util.hh
rna / RNA_TorsionPotential.ccAA.hh
rna / RNA_TorsionPotential.ccrna / RNA_FittedTorsionInfo.hh
rna / RNA_TorsionPotential.ccrna / RNA_Info.hh
rna / RNA_TorsionPotential.ccrna / util.hh
rna / RNA_TorsionPotential.ccVariantType.hh
rna / RNA_TorsionPotential.hhrna / RNA_FittedTorsionInfo.fwd.hh
rna / RNP_LowResPairDistPotential.ccrna / util.hh
rna / RNP_LowResPotential.ccrna / util.hh
rna / RNP_LowResStackData.ccrna / util.hh
sasa.ccAtomType.hh
sasa.ccAtomTypeSet.hh
sasa / SasaMethod.ccResidueType.hh
ScoreFunctionFactory.ccAA.hh
ScoringManager.ccChemicalManager.hh
ScoringManager.ccmainchain_potential / MainchainScoreTable.fwd.hh
ScoringManager.ccResidueType.hh
ScoringManager.ccmainchain_potential / util.hh
ScoringManager.hhAA.hh
ScoringManager.hhmainchain_potential / MainchainScoreTable.fwd.hh
ScoringManager.hhResidueType.fwd.hh
SecondaryStructurePotential.ccVariantType.hh
constraints / SequenceProfileConstraint.hhAA.hh
dna / setup.ccAA.hh
constraints / SiteConstraint.cccarbohydrates / CarbohydrateInfo.hh
constraints / SiteConstraint.ccResidueType.hh
constraints / SiteConstraintResidues.ccResidueType.hh
loop_graph / evaluator / SixDTransRotPotentialEvaluator.ccResidueType.hh
SmoothEnvPairPotential.ccAA.hh
SmoothEnvPairPotential.ccVariantType.hh
SplitUnfoldedTwoBodyPotential.ccAtomType.hh
SplitUnfoldedTwoBodyPotential.ccResidueType.hh
SplitUnfoldedTwoBodyPotential.hhResidueType.fwd.hh
SS_Info.hhResidueType.fwd.hh
rna / TNA_SuitePotential.ccrna / util.hh
hbonds / types.cctypes.hh
hbonds / types.hhtypes.hh
fiber_diffraction / util.ccAA.hh
nmr / util.ccAA.hh
fiber_diffraction / util.ccAtomType.hh
fiber_diffraction / util.ccAtomTypeSet.hh
carbohydrates / util.cccarbohydrates / CarbohydrateInfo.hh
fiber_diffraction / util.ccChemicalManager.hh
methods / util.ccResidueConnection.hh
dssp / util.ccResidueType.hh
nmr / util.ccResidueType.hh
fiber_diffraction / util.ccResidueTypeSet.hh
magnesium / util.ccrna / RNA_FittedTorsionInfo.hh
magnesium / util.hhrna / RNA_FittedTorsionInfo.fwd.hh
vdwaals / VDW_Energy.ccAtomType.hh
vdwaals / VDW_Energy.ccAtomTypeSet.hh
vdwaals / VDW_Energy.ccChemicalManager.hh
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