hybridization → core Relation

File in src/protocols/hybridization	Includes file in src/core
AllResiduesChanged.hh	pose / Pose.hh
AllResiduesChanged.hh	conformation / Residue.hh
BackboneTorsionPerturbation.cc	scoring / constraints / AtomPairConstraint.hh
BackboneTorsionPerturbation.cc	optimization / AtomTreeMinimizer.hh
BackboneTorsionPerturbation.cc	conformation / Conformation.hh
BackboneTorsionPerturbation.cc	import_pose / import_pose.hh
BackboneTorsionPerturbation.cc	optimization / MinimizerOptions.hh
BackboneTorsionPerturbation.cc	kinematics / MoveMap.hh
BackboneTorsionPerturbation.cc	pack / task / PackerTask.fwd.hh
BackboneTorsionPerturbation.cc	pack / task / PackerTask.hh
BackboneTorsionPerturbation.cc	pose / Pose.hh
BackboneTorsionPerturbation.cc	scoring / Ramachandran.hh
BackboneTorsionPerturbation.cc	conformation / Residue.hh
BackboneTorsionPerturbation.cc	chemical / ResidueType.hh
BackboneTorsionPerturbation.cc	scoring / func / ScalarWeightedFunc.hh
BackboneTorsionPerturbation.cc	scoring / ScoreFunction.hh
BackboneTorsionPerturbation.cc	scoring / ScoreFunctionFactory.hh
BackboneTorsionPerturbation.cc	scoring / ScoringManager.hh
BackboneTorsionPerturbation.cc	pack / task / TaskFactory.hh
BackboneTorsionPerturbation.cc	scoring / func / USOGFunc.hh
BackboneTorsionPerturbation.hh	optimization / AtomTreeMinimizer.fwd.hh
BackboneTorsionPerturbation.hh	optimization / MinimizerOptions.fwd.hh
BackboneTorsionPerturbation.hh	kinematics / MoveMap.hh
BackboneTorsionPerturbation.hh	pose / Pose.fwd.hh
BackboneTorsionPerturbation.hh	scoring / ScoreFunction.fwd.hh
BackboneTorsionPerturbation.hh	pack / task / TaskFactory.fwd.hh
BackboneTorsionPerturbation.hh	types.hh
BackboneTorsionSampler.cc	optimization / AtomTreeMinimizer.hh
BackboneTorsionSampler.cc	conformation / Conformation.hh
BackboneTorsionSampler.cc	import_pose / import_pose.hh
BackboneTorsionSampler.cc	optimization / MinimizerOptions.hh
BackboneTorsionSampler.cc	kinematics / MoveMap.hh
BackboneTorsionSampler.cc	pack / task / PackerTask.fwd.hh
BackboneTorsionSampler.cc	pack / task / PackerTask.hh
BackboneTorsionSampler.cc	pose / Pose.hh
BackboneTorsionSampler.cc	scoring / Ramachandran.hh
BackboneTorsionSampler.cc	conformation / Residue.hh
BackboneTorsionSampler.cc	chemical / ResidueType.hh
BackboneTorsionSampler.cc	scoring / ScoreFunction.hh
BackboneTorsionSampler.cc	scoring / ScoreFunctionFactory.hh
BackboneTorsionSampler.cc	scoring / ScoringManager.hh
BackboneTorsionSampler.cc	pack / task / TaskFactory.hh
BackboneTorsionSampler.hh	optimization / AtomTreeMinimizer.fwd.hh
BackboneTorsionSampler.hh	optimization / MinimizerOptions.fwd.hh
BackboneTorsionSampler.hh	kinematics / MoveMap.hh
BackboneTorsionSampler.hh	pose / Pose.fwd.hh
BackboneTorsionSampler.hh	scoring / ScoreFunction.fwd.hh
BackboneTorsionSampler.hh	pack / task / TaskFactory.fwd.hh
BackboneTorsionSampler.hh	types.hh
CartesianHybridize.cc	pose / datacache / CacheableDataType.hh
CartesianHybridize.cc	optimization / CartesianMinimizer.hh
CartesianHybridize.cc	chemical / ChemicalManager.fwd.hh
CartesianHybridize.cc	kinematics / FoldTree.hh
CartesianHybridize.cc	fragment / FragSet.hh
CartesianHybridize.cc	fragment / Frame.hh
CartesianHybridize.cc	fragment / FrameIterator.hh
CartesianHybridize.cc	optimization / MinimizerOptions.hh
CartesianHybridize.cc	kinematics / MoveMap.hh
CartesianHybridize.cc	pose / PDBInfo.hh
CartesianHybridize.cc	pose / Pose.hh
CartesianHybridize.cc	scoring / ScoreFunction.hh
CartesianHybridize.cc	scoring / ScoreFunctionFactory.hh
CartesianHybridize.cc	conformation / symmetry / SymmetricConformation.hh
CartesianHybridize.cc	conformation / symmetry / SymmetryInfo.hh
CartesianHybridize.cc	pack / task / TaskFactory.hh
CartesianHybridize.cc	pack / task / operation / TaskOperations.hh
CartesianHybridize.cc	pose / symmetry / util.hh
CartesianHybridize.cc	conformation / util.hh
CartesianHybridize.hh	fragment / FragSet.fwd.hh
CartesianHybridize.hh	fragment / Frame.hh
CartesianHybridize.hh	scoring / ScoreFunction.fwd.hh
CartesianSampler.cc	scoring / constraints / AtomPairConstraint.hh
CartesianSampler.cc	optimization / AtomTreeMinimizer.hh
CartesianSampler.cc	pose / datacache / CacheableDataType.hh
CartesianSampler.cc	optimization / CartesianMinimizer.hh
CartesianSampler.cc	chemical / ChemicalManager.fwd.hh
CartesianSampler.cc	scoring / constraints / ConstraintSet.hh
CartesianSampler.cc	scoring / constraints / CoordinateConstraint.hh
CartesianSampler.cc	kinematics / FoldTree.hh
CartesianSampler.cc	fragment / FragmentIO.hh
CartesianSampler.cc	fragment / FragSet.hh
CartesianSampler.cc	fragment / Frame.hh
CartesianSampler.cc	fragment / FrameIterator.hh
CartesianSampler.cc	scoring / func / HarmonicFunc.hh
CartesianSampler.cc	import_pose / import_pose.hh
CartesianSampler.cc	optimization / MinimizerOptions.hh
CartesianSampler.cc	kinematics / MoveMap.hh
CartesianSampler.cc	io / pdb / pdb_writer.hh
CartesianSampler.cc	pose / PDBInfo.hh
CartesianSampler.cc	scoring / cryst / PhenixInterface.hh
CartesianSampler.cc	pose / Pose.hh
CartesianSampler.cc	select / residue_selector / ResidueSelector.hh
CartesianSampler.cc	scoring / func / ScalarWeightedFunc.hh
CartesianSampler.cc	scoring / ScoreFunction.hh
CartesianSampler.cc	scoring / ScoreFunctionFactory.hh
CartesianSampler.cc	pose / selection.hh
CartesianSampler.cc	conformation / symmetry / SymmetricConformation.hh
CartesianSampler.cc	conformation / symmetry / SymmetryInfo.hh
CartesianSampler.cc	pack / task / TaskFactory.fwd.hh
CartesianSampler.cc	pack / task / TaskFactory.hh
CartesianSampler.cc	pack / task / operation / TaskOperations.hh
CartesianSampler.cc	scoring / func / USOGFunc.hh
CartesianSampler.cc	select / util.hh
CartesianSampler.cc	pose / util.hh
CartesianSampler.cc	conformation / util.hh
CartesianSampler.cc	pose / symmetry / util.hh
CartesianSampler.hh	fragment / FragSet.fwd.hh
CartesianSampler.hh	fragment / Frame.hh
CartesianSampler.hh	pose / Pose.hh
CartesianSampler.hh	select / residue_selector / ResidueSelector.fwd.hh
CartesianSampler.hh	scoring / ScoreFunction.fwd.hh
ChunkTrialMover.cc	id / AtomID.fwd.hh
ChunkTrialMover.cc	kinematics / FoldTree.hh
ChunkTrialMover.cc	pose / PDBInfo.hh
ChunkTrialMover.cc	pose / Pose.hh
ChunkTrialMover.cc	conformation / Residue.hh
DDomainParse.cc	pose / Pose.hh
DDomainParse.cc	conformation / Residue.hh
DDomainParse.cc	types.hh
DDomainParse.hh	pose / Pose.fwd.hh
DDomainParse.hh	types.hh
DomainAssembly.cc	id / AtomID.hh
DomainAssembly.cc	id / AtomID_Map.hh
DomainAssembly.cc	scoring / constraints / AtomPairConstraint.hh
DomainAssembly.cc	scoring / constraints / BoundConstraint.hh
DomainAssembly.cc	conformation / Conformation.hh
DomainAssembly.cc	kinematics / FoldTree.hh
DomainAssembly.cc	pose / init_id_map.hh
DomainAssembly.cc	pose / PDBInfo.hh
DomainAssembly.cc	scoring / ScoreFunction.hh
DomainAssembly.cc	scoring / ScoreFunctionFactory.hh
DomainAssembly.cc	types.hh
DomainAssembly.hh	pose / Pose.fwd.hh
DomainAssembly.hh	scoring / ScoreFunction.fwd.hh
DomainAssembly.hh	types.hh
FoldTreeHybridize.cc	id / AtomID.hh
FoldTreeHybridize.cc	id / AtomID_Map.hh
FoldTreeHybridize.cc	optimization / AtomTreeMinimizer.hh
FoldTreeHybridize.cc	conformation / Conformation.hh
FoldTreeHybridize.cc	fragment / ConstantLengthFragSet.hh
FoldTreeHybridize.cc	scoring / methods / EnergyMethodOptions.hh
FoldTreeHybridize.cc	pose / extra_pose_info_util.hh
FoldTreeHybridize.cc	import_pose / import_pose.hh
FoldTreeHybridize.cc	pose / init_id_map.hh
FoldTreeHybridize.cc	optimization / MinimizerOptions.hh
FoldTreeHybridize.cc	kinematics / MoveMap.hh
FoldTreeHybridize.cc	pose / PDBInfo.hh
FoldTreeHybridize.cc	pose / Pose.hh
FoldTreeHybridize.cc	conformation / Residue.hh
FoldTreeHybridize.cc	scoring / rms_util.hh
FoldTreeHybridize.cc	scoring / ScoreFunction.hh
FoldTreeHybridize.cc	scoring / ScoreFunctionFactory.hh
FoldTreeHybridize.cc	fragment / SecondaryStructure.hh
FoldTreeHybridize.cc	scoring / dssp / StrandPairing.hh
FoldTreeHybridize.cc	pose / subpose_manipulation_util.hh
FoldTreeHybridize.cc	optimization / symmetry / SymAtomTreeMinimizer.hh
FoldTreeHybridize.cc	conformation / symmetry / SymmetricConformation.hh
FoldTreeHybridize.cc	conformation / symmetry / SymmetryInfo.hh
FoldTreeHybridize.cc	fragment / util.hh
FoldTreeHybridize.cc	pose / symmetry / util.hh
FoldTreeHybridize.hh	fragment / FragSet.fwd.hh
FoldTreeHybridize.hh	scoring / dssp / PairingsList.hh
FoldTreeHybridize.hh	scoring / ScoreFunction.hh
FragmentBiasAssigner.cc	scoring / electron_density / ElectronDensity.hh
FragmentBiasAssigner.cc	scoring / Energies.hh
FragmentBiasAssigner.cc	kinematics / FoldTree.hh
FragmentBiasAssigner.cc	fragment / FragSet.hh
FragmentBiasAssigner.cc	fragment / Frame.hh
FragmentBiasAssigner.cc	fragment / FrameIterator.hh
FragmentBiasAssigner.cc	pose / PDBInfo.hh
FragmentBiasAssigner.cc	pose / Pose.hh
FragmentBiasAssigner.cc	scoring / ScoreFunction.hh
FragmentBiasAssigner.cc	scoring / ScoreType.hh
FragmentBiasAssigner.cc	conformation / symmetry / SymmetricConformation.hh
FragmentBiasAssigner.cc	conformation / symmetry / SymmetryInfo.hh
FragmentBiasAssigner.cc	pose / symmetry / util.hh
FragmentBiasAssigner.cc	scoring / electron_density / util.hh
FragmentBiasAssigner.hh	fragment / FragSet.fwd.hh
FragmentBiasAssigner.hh	pose / Pose.fwd.hh
FragmentBiasAssigner.hh	scoring / ScoreType.hh
FragmentBiasAssigner.hh	conformation / symmetry / SymmetryInfo.fwd.hh
HybridizeFoldtreeDynamic.cc	conformation / Conformation.hh
HybridizeFoldtreeDynamic.cc	scoring / constraints / ConstraintSet.hh
HybridizeFoldtreeDynamic.cc	kinematics / FoldTree.hh
HybridizeFoldtreeDynamic.cc	pose / Pose.hh
HybridizeFoldtreeDynamic.cc	conformation / symmetry / SymmetricConformation.hh
HybridizeFoldtreeDynamic.cc	conformation / symmetry / SymmetryInfo.hh
HybridizeFoldtreeDynamic.cc	types.hh
HybridizeFoldtreeDynamic.cc	pose / util.hh
HybridizeFoldtreeDynamic.cc	pose / symmetry / util.hh
HybridizeFoldtreeDynamic.cc	conformation / symmetry / util.hh
HybridizeFoldtreeDynamic.cc	pose / variant_util.hh
HybridizeFoldtreeDynamic.cc	chemical / VariantType.hh
HybridizeFoldtreeDynamic.hh	kinematics / FoldTree.hh
HybridizeFoldtreeDynamic.hh	pose / Pose.fwd.hh
HybridizeFoldtreeDynamic.hh	types.hh
HybridizeProtocol.cc	pose / datacache / CacheableDataType.hh
HybridizeProtocol.cc	optimization / CartesianMinimizer.hh
HybridizeProtocol.cc	chemical / ChemicalManager.hh
HybridizeProtocol.cc	scoring / func / CircularSplineFunc.hh
HybridizeProtocol.cc	fragment / ConstantLengthFragSet.hh
HybridizeProtocol.cc	scoring / constraints / Constraint.fwd.hh
HybridizeProtocol.cc	scoring / constraints / ConstraintSet.fwd.hh
HybridizeProtocol.cc	scoring / constraints / ConstraintSet.hh
HybridizeProtocol.cc	scoring / constraints / DihedralConstraint.hh
HybridizeProtocol.cc	scoring / dssp / Dssp.hh
HybridizeProtocol.cc	scoring / methods / EnergyMethodOptions.hh
HybridizeProtocol.cc	pose / extra_pose_info_util.hh
HybridizeProtocol.cc	kinematics / FoldTree.hh
HybridizeProtocol.cc	fragment / FragData.hh
HybridizeProtocol.cc	fragment / FragID_Iterator.hh
HybridizeProtocol.cc	fragment / FragmentIO.hh
HybridizeProtocol.cc	fragment / FragSet.hh
HybridizeProtocol.cc	fragment / Frame.hh
HybridizeProtocol.cc	fragment / FrameIterator.hh
HybridizeProtocol.cc	import_pose / import_pose.hh
HybridizeProtocol.cc	fragment / IndependentBBTorsionSRFD.hh
HybridizeProtocol.cc	pose / init_id_map.hh
HybridizeProtocol.cc	optimization / MinimizerOptions.hh
HybridizeProtocol.cc	kinematics / MoveMap.hh
HybridizeProtocol.cc	pack / task / PackerTask.hh
HybridizeProtocol.cc	pose / PDBInfo.hh
HybridizeProtocol.cc	pose / Pose.hh
HybridizeProtocol.cc	conformation / Residue.hh
HybridizeProtocol.cc	pack / task / ResidueLevelTask.hh
HybridizeProtocol.cc	chemical / ResidueType.hh
HybridizeProtocol.cc	chemical / ResidueTypeSet.fwd.hh
HybridizeProtocol.cc	init / score_function_corrections.hh
HybridizeProtocol.cc	scoring / ScoreFunctionFactory.hh
HybridizeProtocol.cc	sequence / ScoringScheme.fwd.hh
HybridizeProtocol.cc	pose / selection.hh
HybridizeProtocol.cc	sequence / Sequence.hh
HybridizeProtocol.cc	sequence / SequenceAlignment.hh
HybridizeProtocol.cc	io / silent / SilentFileOptions.hh
HybridizeProtocol.cc	io / silent / SilentStruct.hh
HybridizeProtocol.cc	io / silent / SilentStructFactory.hh
HybridizeProtocol.cc	sequence / SimpleScoringScheme.hh
HybridizeProtocol.cc	sequence / SWAligner.hh
HybridizeProtocol.cc	conformation / symmetry / SymmetricConformation.hh
HybridizeProtocol.cc	conformation / symmetry / SymmetryInfo.hh
HybridizeProtocol.cc	pack / task / TaskFactory.hh
HybridizeProtocol.cc	pack / task / operation / TaskOperations.hh
HybridizeProtocol.cc	pose / symmetry / util.hh
HybridizeProtocol.cc	fragment / picking_old / vall / util.hh
HybridizeProtocol.cc	pose / util.hh
HybridizeProtocol.cc	scoring / constraints / util.hh
HybridizeProtocol.cc	fragment / util.hh
HybridizeProtocol.cc	conformation / util.hh
HybridizeProtocol.cc	conformation / carbohydrates / util.hh
HybridizeProtocol.hh	fragment / FragSet.fwd.hh
HybridizeProtocol.hh	pose / Pose.fwd.hh
HybridizeProtocol.hh	scoring / ScoreFunction.fwd.hh
HybridizeProtocol.hh	sequence / SequenceAlignment.fwd.hh
HybridizeProtocol.hh	pack / task / TaskFactory.fwd.hh
InsertChunkMover.cc	id / AtomID.hh
InsertChunkMover.cc	id / AtomID_Map.hh
InsertChunkMover.cc	pose / datacache / CacheableDataType.hh
InsertChunkMover.cc	kinematics / FoldTree.hh
InsertChunkMover.cc	pose / init_id_map.hh
InsertChunkMover.cc	pose / Pose.hh
InsertChunkMover.cc	conformation / Residue.hh
InsertChunkMover.cc	conformation / util.hh
InsertChunkMover.hh	id / AtomID.hh
InsertChunkMover.hh	id / AtomID_Map.hh
InsertChunkMover.hh	pose / Pose.fwd.hh
MRMover.cc	conformation / Conformation.hh
MRMover.cc	scoring / electron_density / ElectronDensity.hh
MRMover.cc	kinematics / FoldTree.hh
MRMover.cc	fragment / FragSet.hh
MRMover.cc	fragment / Frame.hh
MRMover.cc	fragment / FrameIterator.hh
MRMover.cc	kinematics / MoveMap.hh
MRMover.cc	pack / task / PackerTask.hh
MRMover.cc	pose / PDBInfo.hh
MRMover.cc	pose / Pose.hh
MRMover.cc	conformation / Residue.hh
MRMover.cc	scoring / ScoreFunction.hh
MRMover.cc	scoring / ScoreFunctionFactory.hh
MRMover.cc	id / SequenceMapping.hh
MRMover.cc	pack / task / TaskFactory.hh
MRMover.cc	pose / symmetry / util.hh
MRMover.cc	conformation / util.hh
MRMover.cc	pose / variant_util.hh
MRMover.hh	fragment / FragSet.fwd.hh
MRMover.hh	scoring / ScoreFunction.hh
MRMover.hh	types.hh
TemplateHistory.cc	pose / Pose.hh
TemplateHistory.hh	pose / Pose.fwd.hh
TemplateHistory.hh	types.hh
TMalign.cc	id / AtomID.hh
TMalign.cc	id / AtomID_Map.hh
TMalign.cc	pose / PDBInfo.hh
TMalign.cc	pose / Pose.hh
TMalign.cc	conformation / Residue.hh
TMalign.hh	id / AtomID.fwd.hh
TMalign.hh	id / AtomID_Map.fwd.hh
TMalign.hh	pose / Pose.fwd.hh
TMalign.hh	types.hh
util.cc	scoring / constraints / AtomPairConstraint.hh
util.cc	fragment / ConstantLengthFragSet.hh
util.cc	scoring / constraints / Constraint.fwd.hh
util.cc	scoring / constraints / ConstraintIO.hh
util.cc	scoring / constraints / ConstraintSet.hh
util.cc	scoring / constraints / CoordinateConstraint.hh
util.cc	scoring / dssp / Dssp.hh
util.cc	kinematics / Edge.hh
util.cc	kinematics / FoldTree.hh
util.cc	fragment / FragSet.hh
util.cc	fragment / Frame.hh
util.cc	fragment / IndependentBBTorsionSRFD.hh
util.cc	pose / init_id_map.hh
util.cc	pose / PDBInfo.hh
util.cc	pose / Pose.hh
util.cc	conformation / Residue.hh
util.cc	chemical / ResidueType.hh
util.cc	scoring / rms_util.hh
util.cc	scoring / func / ScalarWeightedFunc.hh
util.cc	sequence / Sequence.hh
util.cc	sequence / SequenceAlignment.hh
util.cc	conformation / symmetry / SymmetricConformation.hh
util.cc	conformation / symmetry / SymmetryInfo.hh
util.cc	types.hh
util.cc	scoring / func / USOGFunc.hh
util.cc	sequence / util.hh
util.cc	fragment / picking_old / vall / util.hh
util.cc	pose / symmetry / util.hh
util.hh	id / AtomID.fwd.hh
util.hh	id / AtomID_Map.hh
util.hh	fragment / FragSet.fwd.hh
util.hh	pose / Pose.fwd.hh
util.hh	sequence / SequenceAlignment.fwd.hh
util.hh	types.hh
WeightedFragmentSmoothTrialMover.cc	fragment / FragSet.hh
WeightedFragmentSmoothTrialMover.cc	fragment / Frame.hh
WeightedFragmentSmoothTrialMover.cc	fragment / FrameIterator.hh
WeightedFragmentSmoothTrialMover.hh	fragment / FragSet.fwd.hh
WeightedFragmentSmoothTrialMover.hh	types.hh
WeightedFragmentTrialMover.cc	fragment / FragSet.hh
WeightedFragmentTrialMover.cc	fragment / Frame.hh
WeightedFragmentTrialMover.cc	fragment / FrameIterator.hh
WeightedFragmentTrialMover.hh	fragment / FragSet.fwd.hh