Rosetta

GALigandDock → core Relation

File in src/protocols/ligand_docking/GALigandDockIncludes file in src/core
EntropyEstimator.ccchemical / AA.hh
EntropyEstimator.ccconformation / Conformation.hh
EntropyEstimator.cckinematics / FoldTree.hh
EntropyEstimator.cckinematics / MoveMap.hh
EntropyEstimator.ccpose / Pose.hh
EntropyEstimator.ccconformation / Residue.hh
EntropyEstimator.ccchemical / ResidueType.hh
EntropyEstimator.ccscoring / ScoreFunction.hh
EntropyEstimator.ccpose / util.hh
EntropyEstimator.hhpose / Pose.fwd.hh
EntropyEstimator.hhscoring / ScoreFunction.fwd.hh
EntropyEstimator.hhtypes.hh
GALigandDock.ccscoring / constraints / AngleConstraint.hh
GALigandDock.ccid / AtomID.hh
GALigandDock.ccscoring / constraints / AtomPairConstraint.hh
GALigandDock.ccoptimization / AtomTreeMinimizer.hh
GALigandDock.ccoptimization / CartesianMinimizer.hh
GALigandDock.ccchemical / ChemicalManager.hh
GALigandDock.ccscoring / func / CircularHarmonicFunc.hh
GALigandDock.ccscoring / constraints / Constraint.fwd.hh
GALigandDock.ccscoring / constraints / CoordinateConstraint.hh
GALigandDock.ccscoring / constraints / DihedralConstraint.hh
GALigandDock.ccscoring / electron_density / ElectronDensity.hh
GALigandDock.ccscoring / Energies.hh
GALigandDock.ccpose / extra_pose_info_util.hh
GALigandDock.cckinematics / FoldTree.hh
GALigandDock.ccscoring / func / HarmonicFunc.hh
GALigandDock.ccimport_pose / import_pose.hh
GALigandDock.cckinematics / Jump.hh
GALigandDock.ccoptimization / MinimizerOptions.hh
GALigandDock.cckinematics / MoveMap.hh
GALigandDock.ccpack / optimizeH.hh
GALigandDock.ccpack / pack_rotamers.hh
GALigandDock.ccpack / task / PackerTask.hh
GALigandDock.ccpose / PDBInfo.hh
GALigandDock.ccconformation / Residue.hh
GALigandDock.ccpack / task / ResidueLevelTask.hh
GALigandDock.ccselect / residue_selector / ResidueSelector.hh
GALigandDock.ccchemical / ResidueTypeSet.hh
GALigandDock.ccscoring / rms_util.hh
GALigandDock.ccscoring / func / ScalarWeightedFunc.hh
GALigandDock.ccscoring / ScoreFunctionFactory.hh
GALigandDock.ccscoring / ScoreType.hh
GALigandDock.ccpose / selection.hh
GALigandDock.ccio / silent / SilentFileData.hh
GALigandDock.ccio / silent / SilentFileOptions.hh
GALigandDock.ccpose / subpose_manipulation_util.hh
GALigandDock.ccpack / task / TaskFactory.hh
GALigandDock.ccscoring / func / TopOutFunc.hh
GALigandDock.ccconformation / util.hh
GALigandDock.ccselect / util.hh
GALigandDock.ccpose / util.hh
GALigandDock.hhid / AtomID.hh
GALigandDock.hhscoring / constraints / ConstraintSet.hh
GALigandDock.hhpose / extra_pose_info_util.hh
GALigandDock.hhkinematics / FoldTree.hh
GALigandDock.hhkinematics / MoveMap.hh
GALigandDock.hhpack / task / PackerTask.hh
GALigandDock.hhselect / residue_selector / ResidueSelector.fwd.hh
GALigandDock.hhio / silent / SilentFileOptions.hh
GALigandDock.hhio / silent / SilentStruct.hh
GALigandDock.hhio / silent / SilentStructFactory.hh
GAOptimizer.ccchemical / AA.hh
GAOptimizer.ccid / AtomID.hh
GAOptimizer.ccchemical / ChemicalManager.hh
GAOptimizer.ccpack / dunbrack / DunbrackRotamer.hh
GAOptimizer.ccconformation / Residue.hh
GAOptimizer.ccchemical / ResidueTypeSet.hh
GAOptimizer.ccpack / dunbrack / SingleResidueDunbrackLibrary.hh
GAOptimizer.ccpack / rotamers / SingleResidueRotamerLibrary.fwd.hh
GAOptimizer.ccpack / rotamers / SingleResidueRotamerLibraryFactory.hh
GAOptimizer.hhid / AtomID.hh
GriddedAtomTreeMultifunc.ccoptimization / atom_tree_minimize.hh
GriddedAtomTreeMultifunc.cckinematics / AtomTree.hh
GriddedAtomTreeMultifunc.ccoptimization / DOF_Node.hh
GriddedAtomTreeMultifunc.ccoptimization / MinimizerMap.hh
GriddedAtomTreeMultifunc.ccoptimization / NumericalDerivCheckResult.hh
GriddedAtomTreeMultifunc.ccpose / Pose.hh
GriddedAtomTreeMultifunc.ccid / types.hh
GriddedAtomTreeMultifunc.cctypes.hh
GriddedAtomTreeMultifunc.hhoptimization / MinimizerMap.fwd.hh
GriddedAtomTreeMultifunc.hhoptimization / Multifunc.hh
GridHash3D.hhconformation / Atom.hh
GridHash3D.hhscoring / lkball / LK_BallInfo.hh
GridHash3D.hhtypes.hh
GridHash3D.hhscoring / hbonds / types.hh
GridScorer.ccconformation / Atom.hh
GridScorer.ccoptimization / AtomTreeMinimizer.hh
GridScorer.ccchemical / AtomType.hh
GridScorer.ccchemical / AtomTypeSet.hh
GridScorer.ccenergy_methods / CartesianBondedEnergy.hh
GridScorer.ccchemical / ChemicalManager.hh
GridScorer.ccscoring / hbonds / constants.hh
GridScorer.ccscoring / constraints / ConstraintSet.hh
GridScorer.ccscoring / etable / coulomb / Coulomb.hh
GridScorer.ccscoring / disulfides / DisulfideAtomIndices.hh
GridScorer.ccscoring / electron_density / ElectronDensity.hh
GridScorer.ccscoring / methods / EnergyMethodOptions.hh
GridScorer.ccscoring / etable / Etable.hh
GridScorer.ccscoring / disulfides / FullatomDisulfidePotential.hh
GridScorer.ccscoring / hbonds / HBondDatabase.hh
GridScorer.ccscoring / hbonds / hbonds_geom.hh
GridScorer.ccscoring / lkball / LK_BallEnergy.hh
GridScorer.ccscoring / MinimizationGraph.hh
GridScorer.ccoptimization / Minimizer.hh
GridScorer.ccoptimization / MinimizerMap.hh
GridScorer.cckinematics / MoveMap.hh
GridScorer.ccpose / Pose.hh
GridScorer.ccconformation / Residue.hh
GridScorer.ccconformation / residue_datacache.hh
GridScorer.ccchemical / ResidueConnection.hh
GridScorer.ccscoring / ScoreFunction.hh
GridScorer.ccscoring / ScoreFunctionFactory.hh
GridScorer.ccscoring / ScoreType.hh
GridScorer.ccscoring / ScoringManager.hh
GridScorer.cctypes.hh
GridScorer.ccscoring / electron_density / util.hh
GridScorer.hhconformation / Atom.hh
GridScorer.hhenergy_methods / CartesianBondedEnergy.fwd.hh
GridScorer.hhscoring / hbonds / constants.hh
GridScorer.hhscoring / etable / coulomb / Coulomb.fwd.hh
GridScorer.hhscoring / etable / Etable.hh
GridScorer.hhscoring / hbonds / HBondDatabase.fwd.hh
GridScorer.hhscoring / hbonds / HBondDatabase.hh
GridScorer.hhscoring / hbonds / HBondOptions.hh
GridScorer.hhscoring / hbonds / hbonds_geom.hh
GridScorer.hhscoring / lkball / LK_BallEnergy.fwd.hh
GridScorer.hhoptimization / MinimizerMap.fwd.hh
GridScorer.hhoptimization / MinimizerOptions.fwd.hh
GridScorer.hhpose / Pose.fwd.hh
GridScorer.hhconformation / Residue.fwd.hh
GridScorer.hhscoring / ScoreFunction.hh
GridScorer.hhtypes.hh
LigandAligner.ccid / AtomID.hh
LigandAligner.ccchemical / Bond.fwd.hh
LigandAligner.ccscoring / func / ConstantFunc.hh
LigandAligner.ccscoring / constraints / ConstraintSet.hh
LigandAligner.ccscoring / constraints / CoordinateConstraint.hh
LigandAligner.ccscoring / electron_density / ElectronDensity.hh
LigandAligner.ccscoring / methods / EnergyMethodOptions.hh
LigandAligner.cckinematics / FoldTree.hh
LigandAligner.ccscoring / func / HarmonicFunc.hh
LigandAligner.ccscoring / hbonds / hbonds.hh
LigandAligner.ccscoring / hbonds / HBondSet.hh
LigandAligner.ccscoring / func / LinearPenaltyFunction.hh
LigandAligner.ccscoring / lkball / LK_BallEnergy.hh
LigandAligner.ccoptimization / Minimizer.hh
LigandAligner.ccoptimization / MinimizerMap.hh
LigandAligner.ccoptimization / MinimizerOptions.hh
LigandAligner.cckinematics / MoveMap.hh
LigandAligner.ccpose / Pose.hh
LigandAligner.ccconformation / Residue.hh
LigandAligner.ccconformation / residue_datacache.hh
LigandAligner.ccscoring / ScoreFunction.hh
LigandAligner.ccscoring / ScoreFunctionFactory.hh
LigandAligner.ccscoring / func / SumFunc.hh
LigandAligner.ccscoring / func / TopOutFunc.hh
LigandAligner.cctypes.hh
LigandAligner.hhid / AtomID.hh
LigandAligner.hhpose / Pose.fwd.hh
LigandAligner.hhtypes.hh
LigandConformer.ccid / AtomID.hh
LigandConformer.ccconformation / Conformation.hh
LigandConformer.ccscoring / electron_density / ElectronDensity.hh
LigandConformer.cckinematics / FoldTree.hh
LigandConformer.ccpose / init_id_map.hh
LigandConformer.cckinematics / Jump.hh
LigandConformer.ccscoring / RamaPrePro.hh
LigandConformer.ccconformation / Residue.hh
LigandConformer.ccchemical / rings / RingConformerSet.hh
LigandConformer.ccscoring / rms_util.hh
LigandConformer.ccscoring / ScoringManager.hh
LigandConformer.ccid / TorsionID.hh
LigandConformer.ccid / types.hh
LigandConformer.ccpose / util.hh
LigandConformer.hhid / AtomID.hh
LigandConformer.hhkinematics / FoldTree.fwd.hh
LigandConformer.hhpose / Pose.hh
LigandConformer.hhconformation / Residue.fwd.hh
LigandConformer.hhchemical / ResidueType.hh
LigandConformer.hhid / TorsionID.hh
LigandConformer.hhtypes.hh
MCSAligner.ccid / AtomID.hh
MCSAligner.ccchemical / AtomRefMapping.hh
MCSAligner.ccchemical / AtomType.hh
MCSAligner.ccchemical / AtomTypeSet.hh
MCSAligner.ccchemical / ChemicalManager.hh
MCSAligner.ccchemical / ElementSet.hh
MCSAligner.ccimport_pose / import_pose.hh
MCSAligner.ccchemical / MMAtomTypeSet.hh
MCSAligner.ccchemical / MutableResidueType.fwd.hh
MCSAligner.ccchemical / orbitals / OrbitalTypeSet.hh
MCSAligner.ccpose / Pose.fwd.hh
MCSAligner.ccpose / Pose.hh
MCSAligner.ccchemical / rdkit / RDMolToRestype.hh
MCSAligner.ccconformation / Residue.hh
MCSAligner.ccchemical / residue_io.hh
MCSAligner.ccchemical / ResidueGraphTypes.hh
MCSAligner.ccchemical / ResidueType.hh
MCSAligner.ccchemical / ResidueTypeSet.hh
MCSAligner.ccchemical / rdkit / RestypeToRDMol.hh
MCSAligner.cctypes.hh
MCSAligner.ccconformation / util.hh
MCSAligner.ccchemical / rdkit / util.hh
MCSAligner.hhid / AtomID.hh
MCSAligner.hhpose / Pose.fwd.hh
MCSAligner.hhchemical / rdkit / RestypeToRDMol.hh
MCSAligner.hhtypes.hh
RotamerData.cctypes.hh
RotamerData.hhscoring / lkball / LK_BallInfo.hh
RotamerData.hhtypes.hh
TorsionSampler.ccchemical / AtomTypeSet.hh
TorsionSampler.ccchemical / ChemicalManager.hh
TorsionSampler.ccscoring / GenericBondedPotential.fwd.hh
TorsionSampler.ccscoring / GenericBondedPotential.hh
TorsionSampler.hhchemical / Bond.fwd.hh
TorsionSampler.hhtypes.hh
util.ccchemical / AA.hh
util.ccoptimization / CartesianMinimizer.hh
util.ccscoring / hbonds / constants.hh
util.ccscoring / constraints / Constraint.fwd.hh
util.ccscoring / constraints / CoordinateConstraint.hh
util.ccscoring / Energies.hh
util.ccscoring / methods / EnergyMethodOptions.hh
util.ccpose / extra_pose_info_util.hh
util.cckinematics / FoldTree.hh
util.ccscoring / func / HarmonicFunc.hh
util.ccscoring / hbonds / HBondDatabase.hh
util.ccscoring / hbonds / HBondOptions.hh
util.ccscoring / hbonds / HBondSet.hh
util.ccoptimization / MinimizerOptions.hh
util.cckinematics / MoveMap.hh
util.ccpose / Pose.hh
util.ccconformation / Residue.hh
util.ccscoring / rms_util.hh
util.ccscoring / ScoreFunction.hh
util.ccscoring / ScoreFunctionFactory.hh
util.ccscoring / ScoreType.hh
util.ccpose / subpose_manipulation_util.hh
util.ccscoring / TwelveANeighborGraph.hh
util.cctypes.hh
util.ccpose / util.hh
util.hhscoring / hbonds / constants.hh
util.hhscoring / hbonds / HBondDatabase.hh
util.hhscoring / hbonds / HBondOptions.hh
util.hhscoring / hbonds / HBondSet.hh
util.hhpose / Pose.fwd.hh
util.hhscoring / ScoreFunctionFactory.hh
util.hhtypes.hh
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