ncbb → core Relation

File in src/protocols/ncbb	Includes file in src/core
a3b_hbs / A3BHbsPatcher.cc	chemical / ChemicalManager.fwd.hh
a3b_hbs / A3BHbsPatcher.cc	conformation / Conformation.hh
a3b_hbs / A3BHbsPatcher.cc	chemical / Patch.hh
a3b_hbs / A3BHbsPatcher.cc	pose / Pose.hh
a3b_hbs / A3BHbsPatcher.cc	conformation / Residue.hh
a3b_hbs / A3BHbsPatcher.cc	chemical / ResidueType.hh
a3b_hbs / A3BHbsPatcher.cc	chemical / ResidueTypeFinder.hh
a3b_hbs / A3BHbsPatcher.cc	chemical / ResidueTypeSet.fwd.hh
a3b_hbs / A3BHbsPatcher.cc	types.hh
a3b_hbs / A3BHbsPatcher.cc	conformation / util.hh
a3b_hbs / A3BHbsPatcher.cc	pose / ncbb / util.hh
a3b_hbs / A3BHbsPatcher.cc	chemical / VariantType.hh
a3b_hbs / A3BHbsPatcher.hh	pose / Pose.fwd.hh
a3b_hbs / A3BHbsPatcher.hh	types.hh
hbs / HbsPatcher.cc	chemical / ChemicalManager.fwd.hh
hbs / HbsPatcher.cc	conformation / Conformation.hh
hbs / HbsPatcher.cc	chemical / Patch.hh
hbs / HbsPatcher.cc	pose / Pose.hh
hbs / HbsPatcher.cc	conformation / Residue.hh
hbs / HbsPatcher.cc	chemical / ResidueType.hh
hbs / HbsPatcher.cc	chemical / ResidueTypeFinder.hh
hbs / HbsPatcher.cc	chemical / ResidueTypeSet.fwd.hh
hbs / HbsPatcher.cc	types.hh
hbs / HbsPatcher.cc	conformation / util.hh
hbs / HbsPatcher.cc	pose / ncbb / util.hh
hbs / HbsPatcher.cc	chemical / VariantType.hh
hbs / HbsPatcher.hh	pose / Pose.fwd.hh
hbs / HbsPatcher.hh	types.hh
NcbbDockDesignProtocol.cc	conformation / Conformation.hh
NcbbDockDesignProtocol.cc	kinematics / MoveMap.hh
NcbbDockDesignProtocol.cc	pose / Pose.hh
NcbbDockDesignProtocol.cc	scoring / ScoreFunction.hh
NcbbDockDesignProtocol.cc	scoring / ScoreFunctionFactory.hh
NcbbDockDesignProtocol.cc	scoring / ScoringManager.fwd.hh
NcbbDockDesignProtocol.cc	pack / task / TaskFactory.hh
NcbbDockDesignProtocol.cc	pack / task / operation / TaskOperations.hh
NcbbDockDesignProtocol.cc	scoring / constraints / util.hh
NcbbDockDesignProtocol.cc	pose / ncbb / util.hh
NcbbDockDesignProtocol.hh	scoring / ScoreFunction.fwd.hh
PeptideStapleMover.cc	scoring / constraints / AngleConstraint.hh
PeptideStapleMover.cc	id / AtomID.hh
PeptideStapleMover.cc	scoring / constraints / AtomPairConstraint.hh
PeptideStapleMover.cc	scoring / func / CircularHarmonicFunc.hh
PeptideStapleMover.cc	conformation / Conformation.hh
PeptideStapleMover.cc	scoring / constraints / DihedralConstraint.hh
PeptideStapleMover.cc	kinematics / FoldTree.hh
PeptideStapleMover.cc	scoring / func / HarmonicFunc.hh
PeptideStapleMover.cc	optimization / MinimizerOptions.hh
PeptideStapleMover.cc	kinematics / MoveMap.hh
PeptideStapleMover.cc	pose / Pose.hh
PeptideStapleMover.cc	conformation / Residue.hh
PeptideStapleMover.cc	chemical / ResidueConnection.hh
PeptideStapleMover.cc	scoring / ScoreFunction.hh
PeptideStapleMover.cc	scoring / ScoreFunctionFactory.hh
PeptideStapleMover.cc	types.hh
PeptideStapleMover.cc	pose / util.hh
PeptideStapleMover.hh	pose / Pose.fwd.hh
ResidueReplacementRebuildMover.cc	id / AtomID.hh
ResidueReplacementRebuildMover.cc	chemical / ChemicalManager.hh
ResidueReplacementRebuildMover.cc	id / DOF_ID.hh
ResidueReplacementRebuildMover.cc	kinematics / MoveMap.hh
ResidueReplacementRebuildMover.cc	pose / Pose.hh
ResidueReplacementRebuildMover.cc	conformation / Residue.hh
ResidueReplacementRebuildMover.cc	chemical / ResidueType.hh
ResidueReplacementRebuildMover.cc	chemical / ResidueTypeSet.hh
ResidueReplacementRebuildMover.cc	scoring / ScoreFunction.hh
ResidueReplacementRebuildMover.cc	pose / variant_util.hh
ResidueReplacementRebuildMover.cc	chemical / VariantType.hh
ResidueReplacementRebuildMover.hh	pose / Pose.fwd.hh
ResidueReplacementRebuildMover.hh	scoring / ScoreFunction.fwd.hh
SecStructFinder.cc	chemical / ChemicalManager.hh
SecStructFinder.cc	scoring / constraints / ConstraintSet.fwd.hh
SecStructFinder.cc	scoring / constraints / ConstraintSet.hh
SecStructFinder.cc	kinematics / MoveMap.hh
SecStructFinder.cc	pose / Pose.hh
SecStructFinder.cc	conformation / Residue.hh
SecStructFinder.cc	chemical / ResidueType.hh
SecStructFinder.cc	chemical / ResidueTypeSet.hh
SecStructFinder.cc	scoring / ScoreFunction.hh
SecStructFinder.cc	scoring / ScoreFunctionFactory.hh
SecStructFinder.cc	scoring / constraints / util.hh
SecStructFinder.hh	pose / Pose.fwd.hh
SecStructFinder.hh	scoring / ScoreFunction.fwd.hh
SecStructMinimizeMover.cc	scoring / func / CircularHarmonicFunc.hh
SecStructMinimizeMover.cc	scoring / constraints / DihedralConstraint.hh
SecStructMinimizeMover.cc	scoring / Energies.hh
SecStructMinimizeMover.cc	optimization / Minimizer.hh
SecStructMinimizeMover.cc	optimization / MinimizerMap.hh
SecStructMinimizeMover.cc	optimization / MinimizerOptions.hh
SecStructMinimizeMover.cc	kinematics / MoveMap.hh
SecStructMinimizeMover.cc	pose / Pose.hh
SecStructMinimizeMover.cc	conformation / Residue.hh
SecStructMinimizeMover.cc	chemical / ResidueType.hh
SecStructMinimizeMover.cc	scoring / ScoreFunction.hh
SecStructMinimizeMover.hh	scoring / ScoreFunction.hh
SecStructMinimizeMultiFunc.cc	optimization / atom_tree_minimize.hh
SecStructMinimizeMultiFunc.cc	optimization / DOF_Node.hh
SecStructMinimizeMultiFunc.cc	scoring / Energies.hh
SecStructMinimizeMultiFunc.cc	scoring / EnergyGraph.fwd.hh
SecStructMinimizeMultiFunc.cc	scoring / methods / LongRangeTwoBodyEnergy.hh
SecStructMinimizeMultiFunc.cc	scoring / LREnergyContainer.hh
SecStructMinimizeMultiFunc.cc	scoring / MinimizationGraph.hh
SecStructMinimizeMultiFunc.cc	optimization / MinimizerMap.hh
SecStructMinimizeMultiFunc.cc	pose / Pose.hh
SecStructMinimizeMultiFunc.cc	conformation / Residue.fwd.hh
SecStructMinimizeMultiFunc.cc	scoring / ScoreFunction.hh
SecStructMinimizeMultiFunc.hh	optimization / MinimizerMap.fwd.hh
SecStructMinimizeMultiFunc.hh	optimization / Multifunc.hh
SecStructMinimizeMultiFunc.hh	pose / Pose.fwd.hh
SecStructMinimizeMultiFunc.hh	scoring / ScoreFunction.hh
SecStructMinimizeMultiFunc.hh	id / TorsionID.fwd.hh
SecStructMinimizeMultiFunc.hh	optimization / types.hh
util.cc	pose / metrics / CalculatorFactory.hh
util.cc	conformation / Conformation.hh
util.cc	scoring / Energies.hh
util.cc	kinematics / FoldTree.hh
util.cc	kinematics / MoveMap.hh
util.cc	pack / task / PackerTask.hh
util.cc	pose / Pose.hh
util.cc	pack / task / ResidueLevelTask.hh
util.cc	pose / metrics / simple_calculators / SasaCalculatorLegacy.hh
util.cc	scoring / ScoreFunction.hh
util.cc	pack / task / TaskFactory.hh
util.cc	pack / task / operation / TaskOperations.hh
util.cc	pose / util.hh
util.hh	pose / Pose.fwd.hh
util.hh	scoring / ScoreFunction.fwd.hh
util.hh	pack / task / TaskFactory.fwd.hh
util.hh	types.hh
oop / OopCreatorMover.cc	pose / Pose.hh
oop / OopCreatorMover.cc	pose / selection.hh
oop / OopCreatorMover.cc	pose / util.hh
oop / OopCreatorMover.cc	conformation / Conformation.hh
oop / OopCreatorMover.cc	pack / task / TaskFactory.hh
oop / OopCreatorMover.cc	pack / task / operation / TaskOperation.fwd.hh
oop / OopCreatorMover.cc	pack / task / operation / TaskOperations.hh
oop / OopCreatorMover.cc	scoring / ScoreFunction.hh
oop / OopCreatorMover.cc	scoring / ScoreFunctionFactory.hh
oop / OopCreatorMover.cc	scoring / constraints / util.hh
oop / OopCreatorMover.cc	select / residue_selector / ResidueSelector.hh
oop / OopCreatorMover.cc	select / util.hh
oop / OopCreatorMover.cc	chemical / VariantType.hh
oop / OopCreatorMover.cc	kinematics / MoveMap.hh
oop / OopCreatorMover.cc	conformation / ResidueFactory.hh
oop / OopCreatorMover.cc	scoring / constraints / DihedralConstraint.hh
oop / OopCreatorMover.cc	scoring / func / CircularHarmonicFunc.hh
oop / OopCreatorMover.hh	pose / Pose.fwd.hh
oop / OopCreatorMover.hh	select / residue_selector / ResidueSelector.fwd.hh
oop / OopDockDesignProtocol.cc	pose / Pose.hh
oop / OopDockDesignProtocol.cc	pose / ncbb / util.hh
oop / OopDockDesignProtocol.cc	conformation / Conformation.hh
oop / OopDockDesignProtocol.cc	pack / task / TaskFactory.hh
oop / OopDockDesignProtocol.cc	pack / task / operation / TaskOperation.fwd.hh
oop / OopDockDesignProtocol.cc	pack / task / operation / TaskOperations.hh
oop / OopDockDesignProtocol.cc	scoring / ScoreFunction.hh
oop / OopDockDesignProtocol.cc	scoring / ScoreFunctionFactory.hh
oop / OopDockDesignProtocol.cc	scoring / constraints / util.hh
oop / OopDockDesignProtocol.cc	scoring / ScoringManager.fwd.hh
oop / OopDockDesignProtocol.cc	kinematics / MoveMap.hh
oop / OopDockDesignProtocol.cc	select / residue_selector / ResidueIndexSelector.hh
oop / OopDockDesignProtocol.cc	simple_metrics / metrics / SequenceMetric.hh
oop / OopDockDesignProtocol.hh	scoring / ScoreFunction.fwd.hh
oop / OopMover.cc	chemical / ResidueType.hh
oop / OopMover.cc	chemical / VariantType.hh
oop / OopMover.cc	conformation / Residue.hh
oop / OopMover.cc	conformation / Conformation.hh
oop / OopMover.cc	pose / Pose.hh
oop / OopMover.cc	id / AtomID.hh
oop / OopMover.cc	types.hh
oop / OopMover.hh	pose / Pose.fwd.hh
oop / OopMover.hh	types.hh
oop / OopPatcher.cc	chemical / ChemicalManager.fwd.hh
oop / OopPatcher.cc	chemical / ResidueType.hh
oop / OopPatcher.cc	chemical / ResidueTypeSet.hh
oop / OopPatcher.cc	chemical / VariantType.hh
oop / OopPatcher.cc	chemical / Patch.hh
oop / OopPatcher.cc	conformation / Residue.hh
oop / OopPatcher.cc	conformation / util.hh
oop / OopPatcher.cc	pose / Pose.hh
oop / OopPatcher.cc	pose / ncbb / util.hh
oop / OopPatcher.cc	types.hh
oop / OopPatcher.hh	pose / Pose.fwd.hh
oop / OopPatcher.hh	types.hh
oop / OopPuckMover.cc	pose / Pose.hh
oop / OopPuckMover.cc	types.hh
oop / OopPuckMover.hh	types.hh
oop / OopRandomPuckMover.cc	chemical / ResidueType.hh
oop / OopRandomPuckMover.cc	chemical / VariantType.hh
oop / OopRandomPuckMover.cc	conformation / Residue.hh
oop / OopRandomPuckMover.cc	pose / Pose.hh
oop / OopRandomPuckMover.cc	types.hh
oop / OopRandomPuckMover.hh	pose / Pose.fwd.hh
oop / OopRandomPuckMover.hh	types.hh
oop / OopRandomSmallMover.cc	chemical / ResidueType.hh
oop / OopRandomSmallMover.cc	chemical / VariantType.hh
oop / OopRandomSmallMover.cc	conformation / Residue.hh
oop / OopRandomSmallMover.cc	conformation / Conformation.hh
oop / OopRandomSmallMover.cc	pose / Pose.hh
oop / OopRandomSmallMover.cc	id / AtomID.hh
oop / OopRandomSmallMover.cc	types.hh
oop / OopRandomSmallMover.hh	pose / Pose.fwd.hh
oop / OopRandomSmallMover.hh	types.hh
triazolamer / TriazolamerMover.cc	chemical / ResidueType.hh
triazolamer / TriazolamerMover.cc	chemical / VariantType.hh
triazolamer / TriazolamerMover.cc	conformation / Residue.hh
triazolamer / TriazolamerMover.cc	conformation / Conformation.hh
triazolamer / TriazolamerMover.cc	pose / Pose.hh
triazolamer / TriazolamerMover.cc	id / AtomID.hh
triazolamer / TriazolamerMover.cc	types.hh
triazolamer / TriazolamerMover.hh	pose / Pose.fwd.hh
triazolamer / TriazolamerMover.hh	types.hh
triazolamer / TriazolamerRandomSmallMover.cc	chemical / ResidueType.hh
triazolamer / TriazolamerRandomSmallMover.cc	chemical / VariantType.hh
triazolamer / TriazolamerRandomSmallMover.cc	conformation / Residue.hh
triazolamer / TriazolamerRandomSmallMover.cc	conformation / Conformation.hh
triazolamer / TriazolamerRandomSmallMover.cc	pose / Pose.hh
triazolamer / TriazolamerRandomSmallMover.cc	id / AtomID.hh
triazolamer / TriazolamerRandomSmallMover.cc	types.hh
triazolamer / TriazolamerRandomSmallMover.hh	pose / Pose.fwd.hh
triazolamer / TriazolamerRandomSmallMover.hh	types.hh