simple_filters → core Relation

File in src/protocols/simple_filters	Includes file in src/core
AbinitioBaseFilter.cc	pose / extra_pose_info_util.hh
AbinitioBaseFilter.cc	pose / Pose.hh
AbinitioBaseFilter.cc	conformation / Residue.hh
AbinitioBaseFilter.hh	pose / Pose.fwd.hh
AbinitioBaseFilter.hh	types.hh
AngleToVectorFilter.cc	conformation / Conformation.hh
AngleToVectorFilter.cc	pose / Pose.hh
AngleToVectorFilter.cc	conformation / Residue.hh
AngleToVectorFilter.hh	pose / Pose.fwd.hh
AngleToVectorFilter.hh	types.hh
AtomicContactFilter.cc	pose / Pose.hh
AtomicContactFilter.cc	conformation / Residue.hh
AtomicContactFilter.cc	select / residue_selector / ResidueIndexSelector.hh
AtomicContactFilter.cc	select / residue_selector / ResidueSelector.hh
AtomicContactFilter.cc	select / residue_selector / ResidueSpanSelector.hh
AtomicContactFilter.cc	pose / selection.hh
AtomicContactFilter.cc	types.hh
AtomicContactFilter.cc	select / util.hh
AtomicContactFilter.hh	pose / Pose.fwd.hh
AtomicContactFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
AtomicContactFilter.hh	types.hh
AtomicDistanceFilter.cc	pose / Pose.hh
AtomicDistanceFilter.cc	conformation / Residue.hh
AtomicDistanceFilter.cc	pose / ResidueIndexDescription.hh
AtomicDistanceFilter.cc	select / residue_selector / ResidueSelector.hh
AtomicDistanceFilter.cc	pose / selection.hh
AtomicDistanceFilter.cc	types.hh
AtomicDistanceFilter.cc	select / residue_selector / util.hh
AtomicDistanceFilter.hh	pose / Pose.fwd.hh
AtomicDistanceFilter.hh	pose / ResidueIndexDescription.fwd.hh
AtomicDistanceFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
AtomicDistanceFilter.hh	types.hh
AveragePathLengthFilter.cc	pose / Pose.hh
AveragePathLengthFilter.cc	conformation / Residue.hh
AveragePathLengthFilter.hh	pose / Pose.fwd.hh
AveragePathLengthFilter.hh	types.hh
BatchNrEvaluator.cc	io / silent / SilentStruct.hh
BatchNrEvaluator.hh	pose / Pose.fwd.hh
BuriedSurfaceAreaFilter.cc	id / AtomID_Map.hh
BuriedSurfaceAreaFilter.cc	chemical / AtomType.hh
BuriedSurfaceAreaFilter.cc	pose / Pose.hh
BuriedSurfaceAreaFilter.cc	conformation / Residue.hh
BuriedSurfaceAreaFilter.cc	select / residue_selector / ResidueSelector.hh
BuriedSurfaceAreaFilter.cc	chemical / ResidueType.hh
BuriedSurfaceAreaFilter.cc	scoring / sasa.hh
BuriedSurfaceAreaFilter.cc	select / residue_selector / util.hh
BuriedSurfaceAreaFilter.hh	pose / Pose.fwd.hh
BuriedSurfaceAreaFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
BuriedUnsatHbondFilter.cc	kinematics / FoldTree.hh
BuriedUnsatHbondFilter.cc	pose / init_id_map.hh
BuriedUnsatHbondFilter.cc	pose / Pose.hh
BuriedUnsatHbondFilter.cc	conformation / Residue.hh
BuriedUnsatHbondFilter.cc	select / residue_selector / ResidueSelector.hh
BuriedUnsatHbondFilter.cc	scoring / ScoreFunction.hh
BuriedUnsatHbondFilter.cc	scoring / ScoreFunctionFactory.hh
BuriedUnsatHbondFilter.cc	pose / subpose_manipulation_util.hh
BuriedUnsatHbondFilter.cc	conformation / symmetry / SymmetricConformation.hh
BuriedUnsatHbondFilter.cc	conformation / symmetry / SymmetryInfo.hh
BuriedUnsatHbondFilter.cc	pack / task / TaskFactory.fwd.hh
BuriedUnsatHbondFilter.cc	scoring / atomic_depth / util.hh
BuriedUnsatHbondFilter.cc	pose / symmetry / util.hh
BuriedUnsatHbondFilter.cc	conformation / symmetry / util.hh
BuriedUnsatHbondFilter.cc	select / residue_selector / util.hh
BuriedUnsatHbondFilter.hh	id / AtomID_Map.hh
BuriedUnsatHbondFilter.hh	pose / Pose.fwd.hh
BuriedUnsatHbondFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
BuriedUnsatHbondFilter.hh	scoring / ScoreFunction.fwd.hh
BuriedUnsatHbondFilter.hh	pack / task / TaskFactory.fwd.hh
CamShiftEvaluator.cc	pose / Pose.hh
CamShiftEvaluator.hh	pose / Pose.fwd.hh
ChainBreakFilter.cc	conformation / Conformation.hh
ChainBreakFilter.cc	pose / Pose.hh
ChainBreakFilter.cc	conformation / Residue.hh
ChainBreakFilter.hh	pose / Pose.fwd.hh
ChainCountFilter.cc	pose / Pose.hh
ChainCountFilter.cc	types.hh
ChainCountFilter.hh	pose / Pose.fwd.hh
ChainCountFilter.hh	types.hh
ChiWellRmsdEvaluator.cc	pack / dunbrack / DunbrackRotamer.fwd.hh
ChiWellRmsdEvaluator.cc	pose / Pose.hh
ChiWellRmsdEvaluator.cc	conformation / Residue.hh
ChiWellRmsdEvaluator.cc	scoring / rms_util.hh
ChiWellRmsdEvaluator.cc	pack / dunbrack / RotamerLibrary.hh
ChiWellRmsdEvaluator.cc	pose / metrics / simple_calculators / SasaCalculatorLegacy.hh
ChiWellRmsdEvaluator.hh	pose / Pose.fwd.hh
ChiWellRmsdEvaluator.hh	scoring / rms_util.hh
ChiWellRmsdEvaluatorCreator.cc	import_pose / import_pose.hh
ChiWellRmsdEvaluatorCreator.cc	pose / Pose.hh
COFilter.cc	energy_methods / ContactOrderEnergy.hh
COFilter.cc	pose / Pose.hh
COFilter.cc	types.hh
COFilter.hh	pose / Pose.fwd.hh
ContactMapEvaluator.cc	pose / Pose.hh
ContactMapEvaluator.cc	conformation / Residue.hh
ContactMapEvaluator.cc	io / silent / SilentStruct.hh
ContactMapEvaluator.cc	types.hh
ContactMapEvaluator.hh	pose / Pose.hh
ContactMapEvaluator.hh	types.hh
ContactMapEvaluatorCreator.cc	import_pose / import_pose.hh
ContactMapEvaluatorCreator.cc	pose / Pose.hh
ContactMolecularSurfaceFilter.cc	pose / Pose.hh
ContactMolecularSurfaceFilter.cc	select / residue_selector / ResidueSelector.hh
ContactMolecularSurfaceFilter.cc	select / residue_selector / ResidueVector.hh
ContactMolecularSurfaceFilter.cc	types.hh
ContactMolecularSurfaceFilter.cc	select / residue_selector / util.hh
ContactMolecularSurfaceFilter.hh	scoring / sc / ContactMolecularSurfaceCalculator.hh
ContactMolecularSurfaceFilter.hh	pose / Pose.fwd.hh
ContactMolecularSurfaceFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
DeltaFilter.cc	import_pose / import_pose.hh
DeltaFilter.cc	pose / Pose.hh
DeltaFilter.cc	pose / ref_pose.hh
DeltaFilter.cc	scoring / ScoreFunction.fwd.hh
DeltaFilter.hh	pose / Pose.fwd.hh
DeltaFilter.hh	scoring / ScoreFunction.fwd.hh
DisulfideEntropyFilter.cc	pose / Pose.hh
DisulfideEntropyFilter.cc	conformation / Residue.hh
DisulfideEntropyFilter.hh	pose / Pose.fwd.hh
DisulfideEntropyFilter.hh	types.hh
DomainInterfaceFilter.cc	select / util / interface_vector_calculate.hh
DomainInterfaceFilter.cc	pose / Pose.hh
DomainInterfaceFilter.cc	pose / selection.hh
DomainInterfaceFilter.cc	types.hh
DomainInterfaceFilter.hh	pose / Pose.fwd.hh
DomainInterfaceFilter.hh	types.hh
EnergyPerResidueFilter.cc	chemical / ChemicalManager.fwd.hh
EnergyPerResidueFilter.cc	scoring / Energies.hh
EnergyPerResidueFilter.cc	scoring / methods / EnergyMethodOptions.hh
EnergyPerResidueFilter.cc	kinematics / FoldTree.hh
EnergyPerResidueFilter.cc	scoring / hbonds / HBondOptions.hh
EnergyPerResidueFilter.cc	pose / PDBInfo.hh
EnergyPerResidueFilter.cc	pose / Pose.hh
EnergyPerResidueFilter.cc	conformation / Residue.hh
EnergyPerResidueFilter.cc	scoring / ScoreFunction.hh
EnergyPerResidueFilter.cc	pose / selection.hh
EnergyPerResidueFilter.cc	util / SwitchResidueTypeSet.hh
EnergyPerResidueFilter.cc	types.hh
EnergyPerResidueFilter.hh	pose / Pose.fwd.hh
EnergyPerResidueFilter.hh	scoring / ScoreFunction.fwd.hh
EnergyPerResidueFilter.hh	scoring / ScoreType.hh
EvaluatedTrialMover.cc	scoring / Energies.hh
EvaluatedTrialMover.cc	pose / Pose.hh
EvaluatedTrialMover.cc	io / silent / ProteinSilentStruct.hh
EvaluatedTrialMover.cc	io / silent / ProteinSilentStruct.tmpl.hh
EvaluatedTrialMover.cc	scoring / ScoreFunction.hh
EvaluatedTrialMover.cc	io / silent / SilentFileOptions.hh
EvaluatedTrialMover.cc	io / silent / SilentStruct.hh
EvaluatedTrialMover.hh	pose / Pose.fwd.hh
EvaluatedTrialMover.hh	io / silent / silent.fwd.hh
ExpiryFilter.cc	scoring / ScoreFunction.fwd.hh
ExpiryFilter.hh	pose / Pose.fwd.hh
ExpiryFilter.hh	types.hh
ExternalEvaluator.cc	pose / Pose.hh
ExternalEvaluator.hh	pose / Pose.fwd.hh
ExtraScoreEvaluatorCreator.cc	scoring / ScoreFunction.fwd.hh
ExtraScoreEvaluatorCreator.cc	scoring / ScoreFunctionFactory.hh
ExtraScoreEvaluatorCreator.cc	scoring / constraints / util.hh
FileExistFilter.cc	scoring / ScoreFunction.fwd.hh
FileExistFilter.hh	pose / Pose.fwd.hh
FileExistFilter.hh	types.hh
FileRemoveFilter.cc	scoring / ScoreFunction.fwd.hh
FileRemoveFilter.hh	pose / Pose.fwd.hh
FileRemoveFilter.hh	types.hh
HelixHelixAngleFilter.cc	scoring / dssp / Dssp.hh
HelixHelixAngleFilter.cc	pose / Pose.hh
HelixHelixAngleFilter.cc	conformation / Residue.hh
HelixHelixAngleFilter.cc	types.hh
HelixHelixAngleFilter.hh	pose / Pose.fwd.hh
HelixHelixAngleFilter.hh	types.hh
HolesFilter.cc	id / AtomID.hh
HolesFilter.cc	id / AtomID_Map.hh
HolesFilter.cc	scoring / packing / compute_holes_score.hh
HolesFilter.cc	pose / Pose.hh
HolesFilter.cc	conformation / Residue.hh
HolesFilter.cc	select / residue_selector / ResidueSelector.hh
HolesFilter.cc	types.hh
HolesFilter.cc	select / residue_selector / util.hh
HolesFilter.hh	pose / Pose.fwd.hh
HolesFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
InterfaceHbondsFilter.cc	scoring / Energies.hh
InterfaceHbondsFilter.cc	kinematics / FoldTree.hh
InterfaceHbondsFilter.cc	scoring / hbonds / HBondOptions.hh
InterfaceHbondsFilter.cc	scoring / hbonds / hbonds.hh
InterfaceHbondsFilter.cc	scoring / hbonds / HBondSet.hh
InterfaceHbondsFilter.cc	pose / Pose.hh
InterfaceHbondsFilter.cc	conformation / Residue.hh
InterfaceHbondsFilter.cc	scoring / ScoreFunction.hh
InterfaceHbondsFilter.cc	scoring / ScoreFunctionFactory.hh
InterfaceHbondsFilter.hh	pose / Pose.fwd.hh
InterfaceHbondsFilter.hh	scoring / ScoreFunction.fwd.hh
InterfaceHbondsFilter.hh	types.hh
InterfaceHydrophobicResidueContactsFilter.cc	scoring / Energies.hh
InterfaceHydrophobicResidueContactsFilter.cc	pose / Pose.hh
InterfaceHydrophobicResidueContactsFilter.cc	conformation / Residue.hh
InterfaceHydrophobicResidueContactsFilter.cc	select / residue_selector / ResidueSelector.hh
InterfaceHydrophobicResidueContactsFilter.cc	scoring / ScoreFunction.hh
InterfaceHydrophobicResidueContactsFilter.hh	pose / Pose.fwd.hh
InterfaceHydrophobicResidueContactsFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
InterfaceHydrophobicResidueContactsFilter.hh	scoring / ScoreFunction.fwd.hh
InterfaceHydrophobicResidueContactsFilter.hh	scoring / ScoreType.hh
InterfaceHydrophobicResidueContactsFilter.hh	types.hh
InterfaceSasaFilter.cc	id / AtomID_Map.hh
InterfaceSasaFilter.cc	chemical / AtomType.hh
InterfaceSasaFilter.cc	pose / Pose.hh
InterfaceSasaFilter.cc	conformation / Residue.hh
InterfaceSasaFilter.cc	conformation / symmetry / SymmetryInfo.hh
InterfaceSasaFilter.cc	types.hh
InterfaceSasaFilter.cc	pose / symmetry / util.hh
InterfaceSasaFilter.hh	pose / Pose.fwd.hh
InterfaceSasaFilter.hh	types.hh
InterRepeatContactFilter.cc	id / NamedAtomID.hh
InterRepeatContactFilter.cc	pose / Pose.hh
InterRepeatContactFilter.cc	types.hh
InterRepeatContactFilter.hh	pose / Pose.fwd.hh
IntraRepeatContactFilter.cc	id / NamedAtomID.hh
IntraRepeatContactFilter.cc	pose / Pose.hh
IntraRepeatContactFilter.cc	types.hh
IntraRepeatContactFilter.hh	pose / Pose.fwd.hh
JScoreEvaluator.cc	pose / Pose.hh
JScoreEvaluator.cc	scoring / ScoreFunction.hh
JScoreEvaluator.cc	scoring / ScoreFunctionFactory.hh
JScoreEvaluator.cc	util / SwitchResidueTypeSet.hh
JScoreEvaluator.cc	types.hh
JScoreEvaluator.hh	pose / Pose.fwd.hh
JScoreEvaluator.hh	scoring / ScoreFunction.fwd.hh
JScoreEvaluator.hh	io / silent / SilentStruct.fwd.hh
JScoreEvaluator.hh	types.hh
JumpEvaluator.cc	kinematics / AtomTree.hh
JumpEvaluator.cc	conformation / Conformation.hh
JumpEvaluator.cc	kinematics / FoldTree.hh
JumpEvaluator.cc	pose / Pose.hh
JumpEvaluator.hh	id / AtomID.hh
JumpEvaluator.hh	pose / Pose.fwd.hh
JumpEvaluator.hh	kinematics / Stub.hh
LongestContinuousApolarSegmentFilter.cc	chemical / ResidueType.hh
LongestContinuousApolarSegmentFilter.hh	chemical / ResidueType.fwd.hh
LongestContinuousPolarSegmentFilter.cc	chemical / AA.hh
LongestContinuousPolarSegmentFilter.cc	pose / Pose.hh
LongestContinuousPolarSegmentFilter.cc	conformation / Residue.hh
LongestContinuousPolarSegmentFilter.cc	select / residue_selector / ResidueSelector.hh
LongestContinuousPolarSegmentFilter.cc	chemical / ResidueType.hh
LongestContinuousPolarSegmentFilter.hh	pose / Pose.fwd.hh
LongestContinuousPolarSegmentFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
LongestContinuousPolarSegmentFilter.hh	chemical / ResidueType.fwd.hh
MembAccesResidueLipophilicityFilter.cc	chemical / AA.hh
MembAccesResidueLipophilicityFilter.cc	conformation / Conformation.hh
MembAccesResidueLipophilicityFilter.cc	conformation / membrane / MembraneInfo.hh
MembAccesResidueLipophilicityFilter.cc	energy_methods / MPSpanInsertionEnergy.hh
MembAccesResidueLipophilicityFilter.cc	pack / task / PackerTask.fwd.hh
MembAccesResidueLipophilicityFilter.cc	pack / task / PackerTask.hh
MembAccesResidueLipophilicityFilter.cc	pose / Pose.hh
MembAccesResidueLipophilicityFilter.cc	pack / task / TaskFactory.hh
MembAccesResidueLipophilicityFilter.cc	types.hh
MembAccesResidueLipophilicityFilter.cc	scoring / sasa / util.hh
MembAccesResidueLipophilicityFilter.hh	pose / Pose.fwd.hh
MembAccesResidueLipophilicityFilter.hh	pack / task / TaskFactory.fwd.hh
MembAccesResidueLipophilicityFilter.hh	types.hh
MotifScoreFilter.cc	scoring / dssp / Dssp.hh
MotifScoreFilter.cc	scoring / motif / motif_hash_stuff.hh
MotifScoreFilter.cc	pose / Pose.hh
MotifScoreFilter.cc	pose / motif / reference_frames.hh
MotifScoreFilter.cc	conformation / Residue.hh
MotifScoreFilter.hh	scoring / motif / motif_hash_stuff.fwd.hh
MotifScoreFilter.hh	pose / Pose.fwd.hh
MPSpanAngleFilter.cc	energy_methods / MPSpanAngleEnergy.hh
MPSpanAngleFilter.cc	pose / Pose.fwd.hh
MPSpanAngleFilter.cc	types.hh
MPSpanAngleFilter.hh	pose / Pose.fwd.hh
MPSpanAngleFilter.hh	types.hh
MutationsFilter.cc	conformation / Conformation.hh
MutationsFilter.cc	pack / task / PackerTask.hh
MutationsFilter.cc	pose / PDBInfo.hh
MutationsFilter.cc	pose / Pose.hh
MutationsFilter.cc	pose / ref_pose.hh
MutationsFilter.cc	conformation / Residue.hh
MutationsFilter.cc	chemical / ResidueType.hh
MutationsFilter.cc	pack / task / TaskFactory.hh
MutationsFilter.cc	pose / symmetry / util.hh
MutationsFilter.hh	pose / Pose.fwd.hh
MutationsFilter.hh	pack / task / TaskFactory.fwd.hh
NativeEvaluatorCreator.cc	import_pose / import_pose.hh
NativeEvaluatorCreator.cc	pose / Pose.hh
NeighborTypeFilter.cc	conformation / Conformation.hh
NeighborTypeFilter.cc	pose / Pose.hh
NeighborTypeFilter.cc	conformation / Residue.hh
NeighborTypeFilter.cc	pose / selection.hh
NeighborTypeFilter.hh	pose / Pose.fwd.hh
NeighborTypeFilter.hh	types.hh
NetChargeFilter.cc	chemical / AA.hh
NetChargeFilter.cc	pose / Pose.hh
NetChargeFilter.cc	conformation / Residue.hh
NetChargeFilter.cc	types.hh
NetChargeFilter.hh	pose / Pose.fwd.hh
NetChargeFilter.hh	pack / task / TaskFactory.fwd.hh
NetChargeFilter.hh	types.hh
NMerPSSMEnergyFilter.cc	scoring / EnergyMap.hh
NMerPSSMEnergyFilter.cc	scoring / nmer / NMerPSSMEnergy.hh
NMerPSSMEnergyFilter.cc	pose / Pose.hh
NMerPSSMEnergyFilter.cc	scoring / ScoreType.hh
NMerPSSMEnergyFilter.cc	pose / selection.hh
NMerPSSMEnergyFilter.hh	scoring / nmer / NMerPSSMEnergy.hh
NMerPSSMEnergyFilter.hh	pose / Pose.fwd.hh
NMerPSSMEnergyFilter.hh	types.hh
NMerSVMEnergyFilter.cc	scoring / nmer / NMerSVMEnergy.hh
NMerSVMEnergyFilter.cc	pose / PDBInfo.hh
NMerSVMEnergyFilter.cc	pose / Pose.hh
NMerSVMEnergyFilter.cc	pose / selection.hh
NMerSVMEnergyFilter.hh	scoring / methods / EnergyMethodOptions.hh
NMerSVMEnergyFilter.hh	scoring / nmer / NMerSVMEnergy.hh
NMerSVMEnergyFilter.hh	pose / Pose.fwd.hh
NMerSVMEnergyFilter.hh	types.hh
NonSequentialNeighborsFilter.cc	conformation / Conformation.hh
NonSequentialNeighborsFilter.cc	pose / Pose.hh
NonSequentialNeighborsFilter.hh	pose / Pose.fwd.hh
NonSequentialNeighborsFilter.hh	types.hh
PackerNeighborGraphFilter.cc	pack / packer_neighbors.hh
PackerNeighborGraphFilter.cc	types.hh
PackerNeighborGraphFilter.hh	pack / task / PackerTask.fwd.hh
PackerNeighborGraphFilter.hh	scoring / ScoreFunction.fwd.hh
PackerNeighborGraphFilter.hh	types.hh
PackStatFilter.cc	scoring / packstat / compute_sasa.hh
PackStatFilter.cc	pose / Pose.hh
PackStatFilter.cc	types.hh
PackStatFilter.hh	pose / Pose.fwd.hh
PalesEvaluator.cc	pose / Pose.hh
PalesEvaluator.hh	pose / Pose.fwd.hh
PDDFScoreFilter.cc	types.hh
PDDFScoreFilter.hh	pose / Pose.fwd.hh
PoseCommentFilter.cc	pose / extra_pose_info_util.hh
PoseCommentFilter.hh	pose / Pose.fwd.hh
PoseInfoFilter.cc	pose / datacache / CacheableDataType.hh
PoseInfoFilter.cc	scoring / constraints / ConstraintSet.hh
PoseInfoFilter.cc	kinematics / FoldTree.hh
PoseInfoFilter.cc	pose / PDBInfo.hh
PoseInfoFilter.cc	pose / Pose.hh
PoseInfoFilter.cc	types.hh
PoseInfoFilter.hh	pose / Pose.fwd.hh
PoseInfoFilter.hh	types.hh
PoseMetricEvaluator.hh	pose / Pose.hh
PredictedBurialEvaluator.cc	pose / Pose.hh
PredictedBurialEvaluator.cc	conformation / Residue.hh
PredictedBurialEvaluator.cc	types.hh
PredictedBurialEvaluator.hh	pose / Pose.fwd.hh
PredictedBurialEvaluator.hh	io / silent / SilentStruct.fwd.hh
PredictedBurialEvaluator.hh	types.hh
RangeFilter.cc	pose / Pose.hh
RangeFilter.cc	types.hh
RangeFilter.hh	pose / Pose.fwd.hh
RDC_Evaluator.cc	pose / Pose.hh
RDC_Evaluator.cc	scoring / ResidualDipolarCoupling.hh
RDC_Evaluator.cc	energy_methods / ResidualDipolarCouplingEnergy.hh
RDC_Evaluator.hh	pose / Pose.fwd.hh
RDC_Evaluator.hh	scoring / ResidualDipolarCoupling.hh
RDC_Evaluator.hh	scoring / rms_util.hh
RdcTargetEvaluatorCreator.cc	import_pose / import_pose.hh
RdcTargetEvaluatorCreator.cc	pose / Pose.hh
ReadPoseExtraScoreFilter.cc	pose / extra_pose_info_util.hh
ReadPoseExtraScoreFilter.cc	pose / Pose.fwd.hh
ReadPoseExtraScoreFilter.hh	pose / Pose.fwd.hh
ReadPoseExtraScoreFilter.hh	types.hh
RepeatParameterFilter.cc	id / AtomID.hh
RepeatParameterFilter.cc	pose / Pose.hh
RepeatParameterFilter.cc	conformation / Residue.hh
RepeatParameterFilter.cc	chemical / ResidueType.hh
RepeatParameterFilter.hh	pose / Pose.fwd.hh
RepeatParameterFilter.hh	types.hh
ReportFilter.hh	pose / Pose.fwd.hh
ReportFilter.hh	types.hh
ResidueBurialFilter.cc	conformation / Conformation.hh
ResidueBurialFilter.cc	pose / Pose.hh
ResidueBurialFilter.cc	conformation / Residue.hh
ResidueBurialFilter.cc	pose / selection.hh
ResidueBurialFilter.cc	pack / task / TaskFactory.fwd.hh
ResidueBurialFilter.cc	types.hh
ResidueBurialFilter.hh	pack / task / TaskFactory.fwd.hh
ResidueBurialFilter.hh	types.hh
ResidueChiralityFilter.cc	pose / Pose.hh
ResidueChiralityFilter.cc	conformation / Residue.hh
ResidueChiralityFilter.cc	types.hh
ResidueChiralityFilter.hh	pose / Pose.fwd.hh
ResidueChiralityFilter.hh	types.hh
ResidueCountFilter.cc	pose / Pose.hh
ResidueCountFilter.cc	conformation / Residue.hh
ResidueCountFilter.cc	chemical / ResidueProperties.hh
ResidueCountFilter.cc	chemical / ResidueProperty.hh
ResidueCountFilter.cc	select / residue_selector / ResidueSelector.hh
ResidueCountFilter.cc	chemical / ResidueTypeSet.hh
ResidueCountFilter.cc	pack / task / TaskFactory.fwd.hh
ResidueCountFilter.cc	select / residue_selector / util.hh
ResidueCountFilter.hh	pose / Pose.fwd.hh
ResidueCountFilter.hh	chemical / ResidueProperty.hh
ResidueCountFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
ResidueCountFilter.hh	chemical / ResidueTypeSet.fwd.hh
ResidueCountFilter.hh	pack / task / TaskFactory.fwd.hh
ResidueCountFilter.hh	types.hh
ResidueDepthFilter.cc	chemical / AA.hh
ResidueDepthFilter.cc	chemical / ChemicalManager.hh
ResidueDepthFilter.cc	io / CrystInfo.hh
ResidueDepthFilter.cc	select / residue_selector / FalseResidueSelector.hh
ResidueDepthFilter.cc	import_pose / import_pose.hh
ResidueDepthFilter.cc	pose / PDBInfo.hh
ResidueDepthFilter.cc	pose / Pose.hh
ResidueDepthFilter.cc	conformation / Residue.hh
ResidueDepthFilter.cc	select / residue_selector / ResidueIndexSelector.hh
ResidueDepthFilter.cc	chemical / ResidueTypeSet.fwd.hh
ResidueDepthFilter.cc	pose / selection.hh
ResidueDepthFilter.cc	types.hh
ResidueDepthFilter.hh	chemical / AA.hh
ResidueDepthFilter.hh	pose / Pose.fwd.hh
ResidueDepthFilter.hh	conformation / Residue.fwd.hh
ResidueDepthFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
ResidueDepthFilter.hh	types.hh
ResidueDistanceFilter.cc	conformation / Conformation.hh
ResidueDistanceFilter.cc	pose / Pose.hh
ResidueDistanceFilter.cc	conformation / Residue.hh
ResidueDistanceFilter.cc	pose / selection.hh
ResidueDistanceFilter.hh	pose / Pose.fwd.hh
ResidueDistanceFilter.hh	types.hh
ResidueIEFilter.cc	conformation / Conformation.hh
ResidueIEFilter.cc	scoring / Energies.hh
ResidueIEFilter.cc	scoring / EnergyGraph.hh
ResidueIEFilter.cc	pose / Pose.hh
ResidueIEFilter.cc	select / residue_selector / ResidueSelector.hh
ResidueIEFilter.cc	scoring / ScoreFunction.hh
ResidueIEFilter.cc	pose / selection.hh
ResidueIEFilter.cc	select / residue_selector / util.hh
ResidueIEFilter.hh	pose / Pose.fwd.hh
ResidueIEFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
ResidueIEFilter.hh	scoring / ScoreFunction.fwd.hh
ResidueIEFilter.hh	scoring / ScoreType.hh
ResidueLipophilicityFilter.cc	energy_methods / MPResidueLipophilicityEnergy.hh
ResidueLipophilicityFilter.cc	pose / Pose.fwd.hh
ResidueLipophilicityFilter.cc	types.hh
ResidueLipophilicityFilter.hh	pose / Pose.fwd.hh
ResidueLipophilicityFilter.hh	types.hh
ResidueSelectionDistanceFilter.cc	conformation / Conformation.hh
ResidueSelectionDistanceFilter.cc	pose / Pose.hh
ResidueSelectionDistanceFilter.cc	conformation / Residue.hh
ResidueSelectionDistanceFilter.cc	select / residue_selector / ResidueSelector.hh
ResidueSelectionDistanceFilter.cc	select / residue_selector / util.hh
ResidueSelectionDistanceFilter.hh	pose / Pose.fwd.hh
ResidueSelectionDistanceFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
ResidueSelectionDistanceFilter.hh	types.hh
ResidueSetChainEnergyFilter.cc	chemical / ChemicalManager.fwd.hh
ResidueSetChainEnergyFilter.cc	scoring / Energies.hh
ResidueSetChainEnergyFilter.cc	scoring / EnergyGraph.hh
ResidueSetChainEnergyFilter.cc	pose / Pose.hh
ResidueSetChainEnergyFilter.cc	scoring / ScoreFunction.hh
ResidueSetChainEnergyFilter.cc	scoring / ScoreType.hh
ResidueSetChainEnergyFilter.cc	scoring / ScoreTypeManager.hh
ResidueSetChainEnergyFilter.cc	pose / selection.hh
ResidueSetChainEnergyFilter.cc	util / SwitchResidueTypeSet.hh
ResidueSetChainEnergyFilter.hh	pose / Pose.fwd.hh
ResidueSetChainEnergyFilter.hh	scoring / ScoreFunction.fwd.hh
ResidueSetChainEnergyFilter.hh	scoring / ScoreType.hh
ResidueSetChainEnergyFilter.hh	types.hh
ResiduesInInterfaceFilter.cc	pose / Pose.hh
ResiduesInInterfaceFilter.cc	conformation / Residue.hh
ResiduesInInterfaceFilter.cc	scoring / ScoreFunction.hh
ResiduesInInterfaceFilter.cc	scoring / ScoreFunctionFactory.hh
ResiduesInInterfaceFilter.cc	types.hh
ResiduesInInterfaceFilter.hh	pose / Pose.fwd.hh
ResiduesInInterfaceFilter.hh	types.hh
RGFilter.cc	pose / Pose.hh
RGFilter.cc	energy_methods / RG_Energy_Fast.hh
RGFilter.cc	types.hh
RGFilter.hh	pose / Pose.fwd.hh
RmsdEvaluator.cc	pose / Pose.hh
RmsdEvaluator.cc	scoring / rms_util.hh
RmsdEvaluator.cc	io / silent / SilentStruct.hh
RmsdEvaluator.hh	pose / Pose.fwd.hh
RmsdEvaluator.hh	scoring / rms_util.hh
RmsdEvaluatorCreator.cc	import_pose / import_pose.hh
RmsdEvaluatorCreator.cc	pose / Pose.hh
RmsdTargetEvaluatorCreator.cc	import_pose / import_pose.hh
RmsdTargetEvaluatorCreator.cc	pose / Pose.hh
SaveResfileToDiskFilter.cc	pack / task / PackerTask.hh
SaveResfileToDiskFilter.cc	pose / PDBInfo.hh
SaveResfileToDiskFilter.cc	pose / Pose.hh
SaveResfileToDiskFilter.cc	conformation / Residue.hh
SaveResfileToDiskFilter.cc	pack / task / ResidueLevelTask.hh
SaveResfileToDiskFilter.cc	pack / task / TaskFactory.hh
SaveResfileToDiskFilter.cc	types.hh
SaveResfileToDiskFilter.hh	pose / Pose.fwd.hh
SaveResfileToDiskFilter.hh	pack / task / TaskFactory.fwd.hh
SAXSScoreFilter.cc	optimization / AtomTreeMinimizer.hh
SAXSScoreFilter.cc	chemical / ChemicalManager.fwd.hh
SAXSScoreFilter.cc	optimization / MinimizerOptions.hh
SAXSScoreFilter.cc	kinematics / MoveMap.hh
SAXSScoreFilter.cc	pack / pack_rotamers.hh
SAXSScoreFilter.cc	pack / task / PackerTask.hh
SAXSScoreFilter.cc	pose / Pose.hh
SAXSScoreFilter.cc	energy_methods / SAXSEnergyFA.hh
SAXSScoreFilter.cc	scoring / ScoreFunction.fwd.hh
SAXSScoreFilter.cc	scoring / ScoreFunctionFactory.hh
SAXSScoreFilter.cc	util / SwitchResidueTypeSet.hh
SAXSScoreFilter.cc	pack / task / TaskFactory.hh
SAXSScoreFilter.cc	types.hh
SAXSScoreFilter.hh	pose / Pose.fwd.hh
SAXSScoreFilter.hh	energy_methods / SAXSEnergyFA.hh
ScoreEvaluator.cc	scoring / constraints / ConstraintSet.hh
ScoreEvaluator.cc	pose / Pose.hh
ScoreEvaluator.cc	scoring / ScoreFunction.hh
ScoreEvaluator.cc	scoring / ScoreFunctionFactory.hh
ScoreEvaluator.hh	pose / Pose.fwd.hh
ScoreEvaluator.hh	scoring / rms_util.hh
ScoreEvaluator.hh	scoring / ScoreFunction.fwd.hh
SecretionPredictionFilter.cc	pose / chains_util.hh
SecretionPredictionFilter.cc	pose / Pose.hh
SecretionPredictionFilter.hh	pose / Pose.fwd.hh
SequenceDistanceFilter.cc	pose / extra_pose_info_util.hh
SequenceDistanceFilter.cc	pose / Pose.hh
SequenceDistanceFilter.hh	pose / Pose.fwd.hh
ShapeComplementarityFilter.cc	select / jump_selector / JumpSelector.hh
ShapeComplementarityFilter.cc	pose / Pose.hh
ShapeComplementarityFilter.cc	conformation / Residue.hh
ShapeComplementarityFilter.cc	select / residue_selector / ResidueIndexSelector.hh
ShapeComplementarityFilter.cc	select / residue_selector / ResidueVector.hh
ShapeComplementarityFilter.cc	conformation / symmetry / SymmetryInfo.hh
ShapeComplementarityFilter.cc	types.hh
ShapeComplementarityFilter.cc	select / residue_selector / util.hh
ShapeComplementarityFilter.cc	select / jump_selector / util.hh
ShapeComplementarityFilter.cc	pose / symmetry / util.hh
ShapeComplementarityFilter.hh	select / jump_selector / JumpSelector.fwd.hh
ShapeComplementarityFilter.hh	pose / Pose.fwd.hh
ShapeComplementarityFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
ShapeComplementarityFilter.hh	scoring / sc / ShapeComplementarityCalculator.hh
SheetFilter.cc	pose / Pose.hh
SheetFilter.cc	conformation / Residue.hh
SheetFilter.cc	types.hh
SheetFilter.hh	pose / Pose.fwd.hh
SidechainRmsdFilter.cc	conformation / Conformation.hh
SidechainRmsdFilter.cc	pose / Pose.hh
SidechainRmsdFilter.cc	conformation / Residue.hh
SidechainRmsdFilter.cc	conformation / ResidueFactory.hh
SidechainRmsdFilter.cc	chemical / ResidueType.fwd.hh
SidechainRmsdFilter.cc	chemical / ResidueTypeSet.hh
SidechainRmsdFilter.cc	scoring / rms_util.hh
SidechainRmsdFilter.cc	pose / selection.hh
SidechainRmsdFilter.cc	conformation / util.hh
SidechainRmsdFilter.hh	pose / Pose.fwd.hh
SidechainRmsdFilter.hh	types.hh
SimpleHbondsToAtomFilter.cc	id / AtomID.hh
SimpleHbondsToAtomFilter.cc	kinematics / AtomTree.hh
SimpleHbondsToAtomFilter.cc	conformation / Conformation.hh
SimpleHbondsToAtomFilter.cc	scoring / hbonds / hbonds.hh
SimpleHbondsToAtomFilter.cc	scoring / hbonds / HBondSet.hh
SimpleHbondsToAtomFilter.cc	pose / Pose.hh
SimpleHbondsToAtomFilter.cc	conformation / Residue.hh
SimpleHbondsToAtomFilter.cc	scoring / ScoreFunction.hh
SimpleHbondsToAtomFilter.cc	pose / selection.hh
SimpleHbondsToAtomFilter.hh	pose / Pose.fwd.hh
SimpleHbondsToAtomFilter.hh	scoring / ScoreFunction.fwd.hh
SimpleMetricFilter.cc	simple_metrics / CompositeRealMetric.hh
SimpleMetricFilter.cc	simple_metrics / CompositeStringMetric.hh
SimpleMetricFilter.cc	simple_metrics / PerResidueRealMetric.hh
SimpleMetricFilter.cc	simple_metrics / PerResidueStringMetric.hh
SimpleMetricFilter.cc	pose / Pose.fwd.hh
SimpleMetricFilter.cc	simple_metrics / RealMetric.hh
SimpleMetricFilter.cc	simple_metrics / SimpleMetric.hh
SimpleMetricFilter.cc	simple_metrics / SimpleMetricFactory.hh
SimpleMetricFilter.cc	simple_metrics / StringMetric.hh
SimpleMetricFilter.cc	simple_metrics / util.hh
SimpleMetricFilter.hh	pose / Pose.fwd.hh
SimpleMetricFilter.hh	simple_metrics / SimpleMetric.fwd.hh
SpanTopologyMatchPoseFilter.cc	conformation / Conformation.hh
SpanTopologyMatchPoseFilter.cc	conformation / membrane / MembraneInfo.hh
SpanTopologyMatchPoseFilter.cc	pose / Pose.hh
SpanTopologyMatchPoseFilter.cc	conformation / membrane / Span.hh
SpanTopologyMatchPoseFilter.cc	conformation / membrane / SpanningTopology.hh
SpanTopologyMatchPoseFilter.cc	conformation / symmetry / SymmetryInfo.hh
SpanTopologyMatchPoseFilter.cc	types.hh
SpanTopologyMatchPoseFilter.cc	pose / symmetry / util.hh
SpanTopologyMatchPoseFilter.hh	pose / Pose.fwd.hh
SpanTopologyMatchPoseFilter.hh	types.hh
SSElementLengthFilter.cc	scoring / dssp / Dssp.hh
SSElementLengthFilter.cc	pose / Pose.hh
SSElementLengthFilter.cc	select / residue_selector / ResidueSelector.hh
SSElementLengthFilter.cc	select / residue_selector / TrueResidueSelector.hh
SSElementLengthFilter.cc	types.hh
SSElementLengthFilter.cc	select / residue_selector / util.hh
SSElementLengthFilter.hh	pose / Pose.fwd.hh
SSElementLengthFilter.hh	select / residue_selector / ResidueSelector.fwd.hh
SSElementMotifContactFilter.cc	scoring / dssp / Dssp.hh
SSElementMotifContactFilter.cc	kinematics / FoldTree.hh
SSElementMotifContactFilter.cc	scoring / motif / motif_hash_stuff.hh
SSElementMotifContactFilter.cc	pose / Pose.hh
SSElementMotifContactFilter.cc	pose / motif / reference_frames.hh
SSElementMotifContactFilter.cc	conformation / Residue.hh
SSElementMotifContactFilter.cc	conformation / symmetry / SymmetryInfo.fwd.hh
SSElementMotifContactFilter.cc	conformation / symmetry / SymmetryInfo.hh
SSElementMotifContactFilter.cc	types.hh
SSElementMotifContactFilter.cc	pose / symmetry / util.hh
SSElementMotifContactFilter.cc	scoring / motif / util.hh
SSElementMotifContactFilter.hh	scoring / motif / motif_hash_stuff.fwd.hh
SSMotifFinderFilter.cc	conformation / Conformation.hh
SSMotifFinderFilter.cc	scoring / dssp / Dssp.hh
SSMotifFinderFilter.cc	kinematics / FoldTree.hh
SSMotifFinderFilter.cc	import_pose / import_pose.hh
SSMotifFinderFilter.cc	kinematics / Jump.hh
SSMotifFinderFilter.cc	pose / PDBInfo.hh
SSMotifFinderFilter.cc	pose / Pose.hh
SSMotifFinderFilter.cc	conformation / Residue.hh
SSMotifFinderFilter.cc	pose / selection.hh
SSMotifFinderFilter.hh	kinematics / Jump.hh
SSMotifFinderFilter.hh	pose / Pose.fwd.hh
SSMotifFinderFilter.hh	conformation / Residue.fwd.hh
SSMotifFinderFilter.hh	types.hh
StemFinderFilter.cc	conformation / Conformation.hh
StemFinderFilter.cc	scoring / dssp / Dssp.hh
StemFinderFilter.cc	import_pose / import_pose.hh
StemFinderFilter.cc	pose / Pose.hh
StemFinderFilter.cc	conformation / Residue.hh
StemFinderFilter.cc	pose / ResidueIndexDescription.hh
StemFinderFilter.cc	pose / selection.hh
StemFinderFilter.hh	pose / Pose.fwd.hh
StemFinderFilter.hh	pose / ResidueIndexDescription.fwd.hh
StemFinderFilter.hh	types.hh
StructuralSimilarityEvaluator.cc	pose / Pose.hh
StructuralSimilarityEvaluator.cc	scoring / rms_util.hh
StructuralSimilarityEvaluator.cc	types.hh
StructuralSimilarityEvaluator.hh	pose / Pose.fwd.hh
StructuralSimilarityEvaluator.hh	io / silent / SilentStruct.fwd.hh
StructuralSimilarityEvaluator.hh	types.hh
StructureSimilarityEvaluatorCreator.cc	pose / Pose.hh
StructureSimilarityEvaluatorCreator.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
StructureSimilarityEvaluatorCreator.cc	chemical / util.hh
SymmetricMotifFilter.cc	conformation / Conformation.hh
SymmetricMotifFilter.cc	import_pose / import_pose.hh
SymmetricMotifFilter.cc	pose / PDBInfo.hh
SymmetricMotifFilter.cc	pose / Pose.hh
SymmetricMotifFilter.cc	conformation / symmetry / SymmetricConformation.hh
SymmetricMotifFilter.cc	conformation / symmetry / SymmetryInfo.hh
SymmetricMotifFilter.cc	types.hh
SymmetricMotifFilter.cc	pose / symmetry / util.hh
SymmetricMotifFilter.hh	pose / Pose.fwd.hh
SymmetricMotifFilter.hh	types.hh
TaskAwareSASAFilter.cc	pose / init_id_map.hh
TaskAwareSASAFilter.cc	pack / task / PackerTask.hh
TaskAwareSASAFilter.cc	pose / Pose.hh
TaskAwareSASAFilter.cc	conformation / Residue.hh
TaskAwareSASAFilter.cc	scoring / sasa.hh
TaskAwareSASAFilter.cc	pack / task / TaskFactory.hh
TaskAwareSASAFilter.cc	types.hh
TaskAwareSASAFilter.cc	pose / symmetry / util.hh
TaskAwareSASAFilter.hh	pose / Pose.fwd.hh
TaskAwareSASAFilter.hh	pack / task / TaskFactory.fwd.hh
TaskAwareScoreTypeFilter.cc	scoring / Energies.hh
TaskAwareScoreTypeFilter.cc	scoring / methods / EnergyMethodOptions.hh
TaskAwareScoreTypeFilter.cc	scoring / hbonds / HBondOptions.hh
TaskAwareScoreTypeFilter.cc	scoring / hbonds / hbonds.hh
TaskAwareScoreTypeFilter.cc	scoring / hbonds / HBondSet.hh
TaskAwareScoreTypeFilter.cc	pack / task / PackerTask.hh
TaskAwareScoreTypeFilter.cc	pose / PDBInfo.hh
TaskAwareScoreTypeFilter.cc	pose / Pose.hh
TaskAwareScoreTypeFilter.cc	conformation / Residue.hh
TaskAwareScoreTypeFilter.cc	scoring / ScoreFunction.hh
TaskAwareScoreTypeFilter.cc	conformation / symmetry / SymmetryInfo.hh
TaskAwareScoreTypeFilter.cc	pack / task / TaskFactory.hh
TaskAwareScoreTypeFilter.cc	pose / symmetry / util.hh
TaskAwareScoreTypeFilter.hh	pose / Pose.fwd.hh
TaskAwareScoreTypeFilter.hh	scoring / ScoreFunction.fwd.hh
TaskAwareScoreTypeFilter.hh	scoring / ScoreType.hh
TaskAwareScoreTypeFilter.hh	pack / task / TaskFactory.fwd.hh
TerminusDistanceFilter.cc	conformation / Conformation.hh
TerminusDistanceFilter.cc	pose / Pose.hh
TerminusDistanceFilter.cc	scoring / ScoreFunction.hh
TerminusDistanceFilter.cc	scoring / ScoreFunctionFactory.hh
TerminusDistanceFilter.cc	types.hh
TerminusDistanceFilter.hh	pose / Pose.fwd.hh
TerminusDistanceFilter.hh	types.hh
TMsAACompFilter.cc	chemical / AA.hh
TMsAACompFilter.cc	energy_methods / MPSpanInsertionEnergy.hh
TMsAACompFilter.cc	pose / Pose.hh
TMsAACompFilter.cc	conformation / Residue.hh
TMsAACompFilter.cc	conformation / membrane / Span.hh
TMsAACompFilter.cc	types.hh
TMsAACompFilter.hh	pose / Pose.fwd.hh
TMsAACompFilter.hh	types.hh
TMsSpanMembraneFilter.cc	conformation / Conformation.hh
TMsSpanMembraneFilter.cc	conformation / membrane / MembraneInfo.hh
TMsSpanMembraneFilter.cc	pose / Pose.hh
TMsSpanMembraneFilter.cc	conformation / membrane / Span.hh
TMsSpanMembraneFilter.cc	conformation / membrane / SpanningTopology.hh
TMsSpanMembraneFilter.cc	types.hh
TMsSpanMembraneFilter.hh	pose / Pose.fwd.hh
TMsSpanMembraneFilter.hh	types.hh
TotalSasaFilter.cc	id / AtomID_Map.hh
TotalSasaFilter.cc	chemical / AtomType.hh
TotalSasaFilter.cc	pose / metrics / CalculatorFactory.hh
TotalSasaFilter.cc	pack / task / PackerTask.hh
TotalSasaFilter.cc	pose / PDBInfo.hh
TotalSasaFilter.cc	pose / Pose.hh
TotalSasaFilter.cc	conformation / Residue.hh
TotalSasaFilter.cc	pack / task / TaskFactory.hh
TotalSasaFilter.cc	types.hh
TotalSasaFilter.hh	pose / Pose.fwd.hh
TotalSasaFilter.hh	pack / task / TaskFactory.fwd.hh
TotalSasaFilter.hh	types.hh
Worst9merFilter.cc	scoring / dssp / Dssp.hh
Worst9merFilter.cc	pose / Pose.hh
Worst9merFilter.cc	select / residue_selector / ResidueSelector.hh
Worst9merFilter.cc	scoring / ScoreFunction.hh
Worst9merFilter.cc	scoring / ScoreType.hh
Worst9merFilter.cc	scoring / ScoringManager.hh
Worst9merFilter.cc	conformation / symmetry / SymmetricConformation.hh
Worst9merFilter.cc	conformation / symmetry / SymmetryInfo.fwd.hh
Worst9merFilter.cc	conformation / symmetry / SymmetryInfo.hh
Worst9merFilter.cc	types.hh
Worst9merFilter.cc	pose / symmetry / util.hh
Worst9merFilter.cc	select / residue_selector / util.hh
Worst9merFilter.hh	pose / Pose.fwd.hh
Worst9merFilter.hh	select / residue_selector / ResidueSelector.fwd.hh