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• O3I_C5I_MAX_DIST : StepWiseRNA_Classes.hh
• O3I_C5I_MIN_DIST : StepWiseRNA_Classes.hh
• O3I_C5I_PLUS_ONE_MAX_DIST : StepWiseRNA_Classes.hh
• O3I_C5I_PLUS_TWO_MAX_DIST : StepWiseRNA_Classes.hh
• O3I_O3I_PLUS_ONE_MAX_DIST : StepWiseRNA_Classes.hh
• OBSOLETE : IterativeBase.cc , EvaluatedArchive.cc
• OCN_ANGLE : EnergyBasedClusteringProtocol.cc
• opt_read_out_macro : PeakAssignmentParameters.cc
• opt_read_out_macro2 : PeakAssignmentParameters.cc