Score12 is the most common used score file in Rosetta It includes the standard.wts and score12.wts_patch. We will emphasize the energy terms used in these files here.
fa_atr lennard-jones attractive
fa_rep lennard-jones repulsive
fa_sol lazaridis-jarplus solvation energy
fa_intra_rep lennard-jones repulsive between atoms in the same residue
fa_pair statistics based pair term, favors salt bridges
fa_plane pi-pi interaction between aromatic groups, by default = 0
fa_dun internal energy of sidechain rotamers as derived from Dunbrack's statistics
ref reference energy for each amino acid
hbond_lr_bb backbone-backbone hbonds distant in primary sequence
hbond_sr_bb backbone-backbone hbonds close in primary sequence
hbond_bb_sc sidechain-backbone hydrogen bond energy
hbond_sc sidechain-sidechain hydrogen bond energy
p_aa_pp Probability of amino acid at phipsi
dslf_ss_dst distance score in current disulfide
dslf_cs_ang csangles score in current disulfide
dslf_ss_dih dihedral score in current disulfide
dslf_ca_dih ca dihedral score in current disulfide
pro_close proline ring closure energy
rama ramachandran preferences
omega omega dihedral in the backbone
