-run
 -constant_seed
 -rng mt19937
-in
 -file
  -s ligand_dock/7cpa_input.pdb
  -native ligand_dock/7cpa_native.pdb
-out
 -file
  -renumber_pdb
-packing
 -no_optH
 #-ex1
 #-ex1aro
 #-ex2
-docking
 -uniform_trans 5
 -ligand
  -start_from  -1.731  32.589  -5.039
  -improve_orientation 10
  -minimize_ligand
  -harmonic_torsions 10
  -minimize_backbone
  -harmonic_Calphas 0.2
  -mutate_same_name3
  -soft_rep
  -protocol abbrev2

-mute core.util.prof ## dont show timing info
-mute core.io.database
