#-database /ifs1/home/smlewis/minirosetta_database
#-options:user
#-show_accessed_options
#-run:version

-s complex_readytail_final_nozn.pdb.gz

#-ex1
#-ex2
-use_input_sc
-packing:repack_only

-run:min_type dfpmin_armijo_nonmonotone
#-in:file:frag3 complex_readytail_final_nozn_fragset3mer.gz #frags are too big to include w/mini

#local
-flexible_start_resnum 180
#-flexible_stop_resnum 
-flexible_chain C
-short_tail_off 0
-short_tail_fraction 1.0
-shear_on .33333333333333333333

#borrowed from AnchoredDesign
#-AnchoredDesign:perturb_show
#-AnchoredDesign:perturb_temp
#-AnchoredDesign:refine_temp
#-AnchoredDesign:debug
-AnchoredDesign:refine_repack_cycles 10

#-constant_seed
#-jran !!!
#-AnchoredDesign:perturb_cycles 5000
#-AnchoredDesign:refine_cycles 3000
#-nstruct 5000

#runs in 26 seconds on my machine
-AnchoredDesign:perturb_cycles 100
-AnchoredDesign:refine_cycles 20
-nstruct 1
