-s input/1brs.pdb
-ex1
-ex2aro
-use_input_sc
-no_filters
-docking_local_refine
-dock_min # don't do mcm, only do one cycle of minimization
-mute core.util.prof ## dont show timing info
-out:overwrite
-out:file:scorefile 1brs.fasc
-out:file:fullatom #output in fullatom scorefile
-mute core.io.database
