-abinitio:membrane
-in:file:native inputs/BRD4.pdb
-in:file:frag3 inputs/aaBRD4_03_05.200_v1_3
-in:file:frag9 inputs/aaBRD4_09_05.200_v1_3
-in:file:spanfile inputs/BRD4.span
-in:file:lipofile inputs/BRD4.lips4
-membrane:no_interpolate_Mpair
-membrane:Menv_penalties
-score:find_neighbors_3dgrid
-increase_cycles 0.05
-out:nstruct 1
-out:file:silent BRD4_silent.out
-run:no_prof_info_in_silentout
-mute core.io.database
