-run:protocol cm

-in:file:fasta inputs/4fxn_.fasta
-in:file:alignment inputs/4fxn_.1f4pA.aln
-in:file:template_pdb inputs/1f4pA.pdb
-in:file:extended_pose 1
-out:nstruct 1

-in:file:fullatom

-loops:frag_sizes 9 3 1
-loops:frag_files inputs/cc4fxn_09_05.200_v1_3.gz inputs/cc4fxn_03_05.200_v1_3.gz none
-loops:remodel quick_ccd

-cm:min_loop_size 4
-cm:loop_close_level 0

-out:file:silent_struct_type pdb

-unmute protocols:looprelax

-run:test_cycles
