#-database /ifs1/home/smlewis/minirosetta_database
#-options::user
#-show_accessed_options
#-run::version

-s complex_readytail_final_nozn.pdb.gz

#-ex1
#-ex2
-use_input_sc
-packing::repack_only

-run::min_type dfpmin_armijo_nonmonotone
#-in::file::frag3 complex_readytail_final_nozn_fragset3mer.gz #frags are too big to include w/mini

#local
-flexible_start_resnum 180
#-flexible_stop_resnum 
-flexible_chain C
-short_tail_off 0
-short_tail_fraction 1.0
-shear_on .33333333333333333333

#borrowed from AnchoredDesign
#-AnchoredDesign::perturb_show
#-AnchoredDesign::perturb_temp
#-AnchoredDesign::refine_temp
#-AnchoredDesign::debug
-AnchoredDesign::refine_repack_cycles 30

#-constant_seed
#-jran !!!
#-AnchoredDesign::perturb_cycles 5000
#-AnchoredDesign::refine_cycles 3000
#-nstruct 5000

-AnchoredDesign::perturb_cycles 1000
-AnchoredDesign::refine_cycles 100
-nstruct 20

-unmute core.util.prof

-out::prefix output/