
# User Specified Options:

-options:user 

-AnchoredDesign 
-AnchoredDesign:anchor anchor
-AnchoredDesign:allow_anchor_repack false
-AnchoredDesign:vary_cutpoints 
-AnchoredDesign:no_frags false
-AnchoredDesign:debug false
-AnchoredDesign:show_extended false
-AnchoredDesign:refine_only false
-AnchoredDesign:perturb_show false
-AnchoredDesign:perturb_cycles 50
-AnchoredDesign:perturb_temp 0.8
-AnchoredDesign:perturb_CCD_off false
-AnchoredDesign:perturb_KIC_off false
-AnchoredDesign:refine_CCD_off false
-AnchoredDesign:refine_KIC_off false
-AnchoredDesign:refine_cycles 100
-AnchoredDesign:refine_temp 0.8
-AnchoredDesign:refine_repack_cycles 50
-AnchoredDesign:rmsd 
-AnchoredDesign:unbound_mode false
-AnchoredDesign:chainbreak_weight 2
-AnchoredDesign:testing:VDW_weight 2
-AnchoredDesign:testing:delete_interface_native_sidechains 

-loops:loop_file  loopsfile_extended
-loops:vicinity_sampling 

-packing:repack_only 
-packing:ex1 
-packing:ex2 
-packing:extrachi_cutoff 8
-packing:use_input_sc 

-in:path:database  /scratch/smlewis/minirosetta_database/
-in:file:s  1zr0.CD.pdb

-out:nstruct 4
-out:unmute  protocols.loops.CcdLoopClosureMover

-run:version 
-run:min_type dfpmin_armijo
-run:nblist_autoupdate 

core.init: Mini-Rosetta version 39771:39786M from https://svn.rosettacommons.org/source/trunk/mini
core.init: command: /scratch/smlewis/pure2/bin/AnchoredDesign.linuxgccrelease @options_benchmarking -database /scratch/smlewis/minirosetta_database
core.init: 'RNG device' seed mode, using '/dev/urandom', seed=2069395111 seed_offset=0 real_seed=2069395111
core.init.random: RandomGenerator:init: Normal mode, seed=2069395111 RG_type=mt19937
core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set.  Created 7533 residue types
core.conformation.Conformation: Found disulfide between residues 7 137
core.conformation.Conformation: current variant for 7 CYS
core.conformation.Conformation: current variant for 137 CYS
core.conformation.Conformation: current variant for 7 CYD
core.conformation.Conformation: current variant for 137 CYD
core.conformation.Conformation: Found disulfide between residues 25 41
core.conformation.Conformation: current variant for 25 CYS
core.conformation.Conformation: current variant for 41 CYS
core.conformation.Conformation: current variant for 25 CYD
core.conformation.Conformation: current variant for 41 CYD
core.conformation.Conformation: Found disulfide between residues 109 210
core.conformation.Conformation: current variant for 109 CYS
core.conformation.Conformation: current variant for 210 CYS
core.conformation.Conformation: current variant for 109 CYD
core.conformation.Conformation: current variant for 210 CYD
core.conformation.Conformation: Found disulfide between residues 116 183
core.conformation.Conformation: current variant for 116 CYS
core.conformation.Conformation: current variant for 183 CYS
core.conformation.Conformation: current variant for 116 CYD
core.conformation.Conformation: current variant for 183 CYD
core.conformation.Conformation: Found disulfide between residues 148 162
core.conformation.Conformation: current variant for 148 CYS
core.conformation.Conformation: current variant for 162 CYS
core.conformation.Conformation: current variant for 148 CYD
core.conformation.Conformation: current variant for 162 CYD
core.conformation.Conformation: Found disulfide between residues 232 282
core.conformation.Conformation: current variant for 232 CYS
core.conformation.Conformation: current variant for 282 CYS
core.conformation.Conformation: current variant for 232 CYD
core.conformation.Conformation: current variant for 282 CYD
core.conformation.Conformation: Found disulfide between residues 241 265
core.conformation.Conformation: current variant for 241 CYS
core.conformation.Conformation: current variant for 265 CYS
core.conformation.Conformation: current variant for 241 CYD
core.conformation.Conformation: current variant for 265 CYD
core.conformation.Conformation: Found disulfide between residues 257 278
core.conformation.Conformation: current variant for 257 CYS
core.conformation.Conformation: current variant for 278 CYS
core.conformation.Conformation: current variant for 257 CYD
core.conformation.Conformation: current variant for 278 CYD
core.pack.task: Packer task: initialize from command line() 
loops: LOOP formats were recently reconciled - with *some* backwards compatibility. Please check your definition files!
loops: Please check that this is what you intended to read in: 
loops: LOOP  begin  end  cut  skip_rate  extended
loops: LOOP 237 244 1 1 1
apps.pilot.smlewis.AnchoredDesign: initial loops LOOP  begin  end  cut  skip_rate  extended
apps.pilot.smlewis.AnchoredDesign: LOOP 237 244 1 1 1
apps.pilot.smlewis.AnchoredDesign: Read in files
devel.AnchoredDesign.AnchorClasses: anchor start/end 242/242 fits within loop start/end 237/244
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/env_log.txt
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/cbeta_den.txt
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/pair_log.txt
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/cenpack_log.txt
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/Rama_smooth_dyn.dat_ss_6.4
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/scoring/score_functions/hbonds/standard_params/HBPoly1D.csv
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/scoring/score_functions/hbonds/standard_params/HBFadeIntervals.csv
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/scoring/score_functions/hbonds/standard_params/HBEval.csv
devel.AnchoredDesign.AnchorClasses: Using default centroid scorefunction
ScoreFunction::show():
weights: (vdw 2) (cenpack 1) (hbond_sr_bb 1) (hbond_lr_bb 1) (pair 1) (rama 1) (env 1) (cbeta 1) (chainbreak 2)
energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
EnergyMethodOptions::show: unfolded_energies_type: 
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: exclude_DNA_DNA: true
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: exclude_DNA_DNA: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: use_hb_env_dep: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: use_hb_env_dep_DNA: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: smooth_hb_env_dep: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: params_database_tag_: standard_params
devel.AnchoredDesign.AnchorClasses: 
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/pdb_pair_stats_fine
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/P_AA
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/P_AA_n
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/P_AA_pp
devel.AnchoredDesign.AnchorClasses: Using default fullatom scorefunction (STANDARD_WTS, SCORE12_PATCH plus chainbreak @ a lot)
ScoreFunction::show():
weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 0.585) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (rama 0.2) (omega 0.5) (fa_dun 0.56) (p_aa_pp 0.32) (ref 1) (chainbreak 2)
energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51
EnergyMethodOptions::show: unfolded_energies_type: 
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: exclude_DNA_DNA: true
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: exclude_DNA_DNA: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: use_hb_env_dep: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: use_hb_env_dep_DNA: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: smooth_hb_env_dep: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: params_database_tag_: standard_params
devel.AnchoredDesign.AnchorClasses: 
devel.AnchoredDesign.AnchorClasses: autogenerated TaskFactory will prevent repacking for anchor
devel.AnchoredDesign.AnchorClasses: Using default TaskFactory.  Inits from command line and second resfile, then restricts to the loop/interface area
devel.AnchoredDesign.AnchorClasses: Not using separate late TaskFactory.
core.pack.task: Packer task: initialize from command line() 
apps.pilot.smlewis.AnchoredDesign: creating constant-sequence fragments for loops
devel.AnchoredDesign.AnchorClasses: adding frame, start at 237 go for 3 to 240 seq DYG
core.fragment.picking_old.vall.vall_io: Reading Vall library from /scratch/smlewis/minirosetta_database/filtered.vall.dat.2006-05-05 ... 
core.fragment.picking_old.vall.vall_io:    100000
core.fragment.picking_old.vall.vall_io:    200000
core.fragment.picking_old.vall.vall_io:    300000
core.fragment.picking_old.vall.vall_io:    400000
core.fragment.picking_old.vall.vall_io:    500000
core.fragment.picking_old.vall.vall_io:    600000
core.fragment.picking_old.vall.vall_io:    700000
core.fragment.picking_old.vall.vall_io:    800000
core.fragment.picking_old.vall.vall_io:    900000
core.fragment.picking_old.vall.vall_io:    1000000
core.fragment.picking_old.vall.vall_io:    1100000
core.fragment.picking_old.vall.vall_io:    1200000
core.fragment.picking_old.vall.vall_io:    1300000
core.fragment.picking_old.vall.vall_io:    1400000
core.fragment.picking_old.vall.vall_io: ... done.  Read 1400124 lines.  Time elapsed: 24 seconds.
core.fragment.picking_old.vall.vall_io: Prior library contained 0 sections totaling 0 residues.
core.fragment.picking_old.vall.vall_io: Added 62471 sections to library totaling 1400124 residues.
core.fragment.picking_old.vall.eval.IdentityEval: ss = LLL  |  aa = DYG
core.fragment.picking_old.vall.VallLibrarian: best fragment:   score = 0
core.fragment.picking_old.vall.VallLibrarian: worst fragment:  score = 1
devel.AnchoredDesign.AnchorClasses: adding frame, start at 238 go for 3 to 241 seq YGP
core.fragment.picking_old.vall.eval.IdentityEval: ss = LLL  |  aa = YGP
core.fragment.picking_old.vall.VallLibrarian: best fragment:   score = 0
core.fragment.picking_old.vall.VallLibrarian: worst fragment:  score = 1
devel.AnchoredDesign.AnchorClasses: adding frame, start at 239 go for 3 to 242 seq GPC
core.fragment.picking_old.vall.eval.IdentityEval: ss = LLL  |  aa = GPC
core.fragment.picking_old.vall.VallLibrarian: best fragment:   score = 0
core.fragment.picking_old.vall.VallLibrarian: worst fragment:  score = 1
devel.AnchoredDesign.AnchorClasses: recovering memory?
protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter
protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs
protocols.jd2.PDBJobInputter: pushing 1zr0.CD.pdb nstruct index 1
protocols.jd2.PDBJobInputter: pushing 1zr0.CD.pdb nstruct index 2
protocols.jd2.PDBJobInputter: pushing 1zr0.CD.pdb nstruct index 3
protocols.jd2.PDBJobInputter: pushing 1zr0.CD.pdb nstruct index 4
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
core.conformation.Conformation: Found disulfide between residues 7 137
core.conformation.Conformation: current variant for 7 CYS
core.conformation.Conformation: current variant for 137 CYS
core.conformation.Conformation: current variant for 7 CYD
core.conformation.Conformation: current variant for 137 CYD
core.conformation.Conformation: Found disulfide between residues 25 41
core.conformation.Conformation: current variant for 25 CYS
core.conformation.Conformation: current variant for 41 CYS
core.conformation.Conformation: current variant for 25 CYD
core.conformation.Conformation: current variant for 41 CYD
core.conformation.Conformation: Found disulfide between residues 109 210
core.conformation.Conformation: current variant for 109 CYS
core.conformation.Conformation: current variant for 210 CYS
core.conformation.Conformation: current variant for 109 CYD
core.conformation.Conformation: current variant for 210 CYD
core.conformation.Conformation: Found disulfide between residues 116 183
core.conformation.Conformation: current variant for 116 CYS
core.conformation.Conformation: current variant for 183 CYS
core.conformation.Conformation: current variant for 116 CYD
core.conformation.Conformation: current variant for 183 CYD
core.conformation.Conformation: Found disulfide between residues 148 162
core.conformation.Conformation: current variant for 148 CYS
core.conformation.Conformation: current variant for 162 CYS
core.conformation.Conformation: current variant for 148 CYD
core.conformation.Conformation: current variant for 162 CYD
core.conformation.Conformation: Found disulfide between residues 232 282
core.conformation.Conformation: current variant for 232 CYS
core.conformation.Conformation: current variant for 282 CYS
core.conformation.Conformation: current variant for 232 CYD
core.conformation.Conformation: current variant for 282 CYD
core.conformation.Conformation: Found disulfide between residues 241 265
core.conformation.Conformation: current variant for 241 CYS
core.conformation.Conformation: current variant for 265 CYS
core.conformation.Conformation: current variant for 241 CYD
core.conformation.Conformation: current variant for 265 CYD
core.conformation.Conformation: Found disulfide between residues 257 278
core.conformation.Conformation: current variant for 257 CYS
core.conformation.Conformation: current variant for 278 CYS
core.conformation.Conformation: current variant for 257 CYD
core.conformation.Conformation: current variant for 278 CYD
core.pack.task: Packer task: initialize from command line() 
protocols.jd2.PDBJobInputter: filling pose from PDB 1zr0.CD.pdb
devel.AnchoredDesign.Anchor_Movers: running delete_interface_sidechains
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/scoring/score_functions/disulfides/fa_SS_distance_score
core.pack.dunbrack: Dunbrack library took 0.05 seconds to load from binary
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 5811 rotamers at 74 positions.
core.pack.pack_rotamers: IG: 18793412 bytes
devel.AnchoredDesign.Anchor_Movers: ran delete_interface_sidechains
devel.AnchoredDesign.AnchorClasses: checking/(re)setting loop cutpoints; loops become:
devel.AnchoredDesign.AnchorClasses: LOOP 237 244 243 1 1
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  EDGE 223 242 1  EDGE 242 236 -1  EDGE 242 243 -1  EDGE 236 245 2  EDGE 236 224 -1  EDGE 245 244 -1  EDGE 245 286 -1 
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  JEDGE 223 242 1 C N  INTRA_RES_STUB  EDGE 242 236 -1  EDGE 242 243 -1  EDGE 236 245 2  EDGE 236 224 -1  EDGE 245 244 -1  EDGE 245 286 -1 
devel.AnchoredDesign.Anchor_Movers: pose says 'is_cutpoint(#)': 223 243 286 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_LOWER': 243 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_UPPER': 244 
devel.AnchoredDesign.AnchoredPerturbMover: entering perturb steps
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of starting PDB: 7164.03
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1327.302   -1061.842
 fa_rep                       0.440   12261.073    5394.872
 fa_sol                       0.650     852.367     554.039
 fa_intra_rep                 0.004     763.983       3.056
 pro_close                    1.000     133.729     133.729
 fa_pair                      0.490     -35.554     -17.422
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -78.876     -92.285
 hbond_bb_sc                  1.170     -24.457     -28.615
 hbond_sc                     1.100      -8.828      -9.711
 dslf_ss_dst                  0.500      42.135      21.067
 dslf_cs_ang                  2.000      11.308      22.617
 dslf_ss_dih                  5.000       6.468      32.341
 dslf_ca_dih                  5.000       0.211       1.053
 rama                         0.200      90.006      18.001
 omega                        0.500     207.805     103.903
 fa_dun                       0.560     912.913     511.231
 p_aa_pp                      0.320     -75.208     -24.067
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000     824.329    1648.658
---------------------------------------------------
 Total weighted score:                     7164.030
core.chemical.ResidueTypeSet: Finished initializing centroid residue type set.  Created 1202 residue types
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of starting PDB: 1638.16
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000      10.094      20.188
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -77.934     -77.934
 rama                         1.000      90.006      90.006
 chainbreak                   2.000     824.329    1648.658
---------------------------------------------------
 Total weighted score:                     1638.155
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating fragment-based perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover:    Current     Low    total cycles =50
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 1  40.9938  40.9938
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 240/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 2  36.8118  36.8118
protocols.loops.KinematicWrapper: KinematicMover closed in 5 cycles; loop was begin/middle/end 238/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 3  -2.56953  -2.56953
protocols.loops.KinematicWrapper: KinematicMover closed in 3 cycles; loop was begin/middle/end 239/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 4  -3.02208  -3.02208
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 5  -3.02208  -3.02208
protocols.loops.KinematicWrapper: KinematicMover closed in 3 cycles; loop was begin/middle/end 239/240/241
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -1.69604 Finite Diff= 0.105963
devel.AnchoredDesign.AnchoredPerturbMover: 6  -3.02208  -3.02208
protocols.loops.KinematicWrapper: KinematicMover closed in 3 cycles; loop was begin/middle/end 237/240/243
devel.AnchoredDesign.AnchoredPerturbMover: 7  -25.9832  -25.9832
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 8  -25.9832  -25.9832
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 9  -36.8732  -36.8732
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
devel.AnchoredDesign.AnchoredPerturbMover: 10  -36.9153  -36.9153
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 11  -36.9153  -36.9153
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 12  -36.9153  -36.9153
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 13  -36.9153  -36.9153
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
devel.AnchoredDesign.AnchoredPerturbMover: 14  -39.3719  -39.3719
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 15  -39.3719  -39.3719
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 16  -39.3719  -39.3719
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 17  -39.3719  -39.3719
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 18  -39.3719  -39.3719
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 19  -39.3719  -39.3719
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 20  -39.5688  -39.5688
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 21  -39.5688  -39.5688
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 22  -39.5031  -39.5688
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 23  -39.5031  -39.5688
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 24  -39.5031  -39.5688
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -1.34731 Finite Diff= 0.259754
devel.AnchoredDesign.AnchoredPerturbMover: 25  -39.5031  -39.5688
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
devel.AnchoredDesign.AnchoredPerturbMover: 26  -39.5031  -39.5688
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 27  -39.5031  -39.5688
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 28  -39.5031  -39.5688
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 29  -39.5031  -39.5688
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -1.34731 Finite Diff= 0.259754
devel.AnchoredDesign.AnchoredPerturbMover: 30  -39.3977  -39.5688
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 31  -39.3977  -39.5688
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 32  -39.3977  -39.5688
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 33  -39.3977  -39.5688
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 239/240/241
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -1.70779 Finite Diff= 0.193057
devel.AnchoredDesign.AnchoredPerturbMover: 34  -39.3977  -39.5688
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 35  -39.3977  -39.5688
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 36  -41.8786  -41.8786
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 37  -41.8786  -41.8786
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 38  -41.8786  -41.8786
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 39  -41.8786  -41.8786
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
devel.AnchoredDesign.AnchoredPerturbMover: 40  -41.6094  -41.8786
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 41  -41.6094  -41.8786
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 42  -41.6234  -41.8786
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -3.31964 Finite Diff= 0.530259
devel.AnchoredDesign.AnchoredPerturbMover: 43  -41.4797  -41.8786
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 44  -41.4797  -41.8786
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 239/240/241
devel.AnchoredDesign.AnchoredPerturbMover: 45  -41.4797  -41.8786
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -3.36256 Finite Diff= 0.695512
devel.AnchoredDesign.AnchoredPerturbMover: 46  -41.7562  -41.8786
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 47  -41.7562  -41.8786
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -3.30422 Finite Diff= 0.603652
devel.AnchoredDesign.AnchoredPerturbMover: 48  -40.4508  -41.8786
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 49  -40.4508  -41.8786
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 50  -40.4508  -41.8786
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of final perturbed PDB: -41.8786
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.310       0.620
 hbond_sr_bb                  1.000     -43.648     -43.648
 hbond_lr_bb                  1.000     -77.235     -77.235
 rama                         1.000      70.740      70.740
 chainbreak                   2.000       3.822       7.644
---------------------------------------------------
 Total weighted score:                      -41.879
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 2258 rotamers at 70 positions.
core.pack.pack_rotamers: IG: 2563012 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 84 score/deriv cals, 11 narrow-from-wide updates, 21 full updates.
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of perturbed, refullatomized, repacked/minimized PDB: 600.933
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1282.769   -1026.216
 fa_rep                       0.440    1178.061     518.347
 fa_sol                       0.650     826.280     537.082
 fa_intra_rep                 0.004     888.454       3.554
 pro_close                    1.000      51.294      51.294
 fa_pair                      0.490     -36.098     -17.688
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -78.392     -91.719
 hbond_bb_sc                  1.170     -20.922     -24.479
 hbond_sc                     1.100      -9.488     -10.436
 dslf_ss_dst                  0.500      45.091      22.546
 dslf_cs_ang                  2.000       8.765      17.530
 dslf_ss_dih                  5.000       6.428      32.139
 dslf_ca_dih                  5.000       0.232       1.162
 rama                         0.200      95.868      19.174
 omega                        0.500     214.603     107.301
 fa_dun                       0.560     945.028     529.215
 p_aa_pp                      0.320     -83.743     -26.798
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       2.761       5.522
---------------------------------------------------
 Total weighted score:                      600.933
devel.AnchoredDesign.AnchoredPerturbMover: One perturb took 18.97 seconds
devel.AnchoredDesign.AnchoredPerturbMover: perturb steps complete
devel.AnchoredDesign.AnchoredRefineMover: entering refine steps
devel.AnchoredDesign.AnchoredRefineMover: fullatom score upon entering refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1282.769   -1026.216
 fa_rep                       0.440    1178.061     518.347
 fa_sol                       0.650     826.280     537.082
 fa_intra_rep                 0.004     888.454       3.554
 pro_close                    1.000      51.294      51.294
 fa_pair                      0.490     -36.098     -17.688
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -78.392     -91.719
 hbond_bb_sc                  1.170     -20.922     -24.479
 hbond_sc                     1.100      -9.488     -10.436
 dslf_ss_dst                  0.500      45.091      22.546
 dslf_cs_ang                  2.000       8.765      17.530
 dslf_ss_dih                  5.000       6.428      32.139
 dslf_ca_dih                  5.000       0.232       1.162
 rama                         0.200      95.868      19.174
 omega                        0.500     214.603     107.301
 fa_dun                       0.560     945.028     529.215
 p_aa_pp                      0.320     -83.743     -26.798
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       2.761       5.522
---------------------------------------------------
 Total weighted score:                      600.933
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating Small & ShearMover for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: using no-sidechains MoveMap for minimization in normal refine cycles
devel.AnchoredDesign.AnchoredRefineMover:    Current     Low    total cycles =100, second resfile at 67
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 59 score/deriv cals, 10 narrow-from-wide updates, 13 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 1  600.933  600.933
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 59 score/deriv cals, 8 narrow-from-wide updates, 12 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 2  600.933  600.933
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 58 score/deriv cals, 9 narrow-from-wide updates, 14 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 3  600.933  600.933
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 50 score/deriv cals, 10 narrow-from-wide updates, 10 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 4  600.933  600.933
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 128 score/deriv cals, 23 narrow-from-wide updates, 23 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 5  600.933  600.933
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 6  600.933  600.933
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 79 score/deriv cals, 15 narrow-from-wide updates, 16 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 7  600.933  600.933
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 8  600.6  600.6
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 42 score/deriv cals, 5 narrow-from-wide updates, 11 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 9  600.6  600.6
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 39 score/deriv cals, 6 narrow-from-wide updates, 9 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 10  600.6  600.6
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 45 score/deriv cals, 8 narrow-from-wide updates, 10 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 11  600.6  600.6
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 12  599.984  599.984
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 79 score/deriv cals, 9 narrow-from-wide updates, 20 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 13  599.984  599.984
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 51 score/deriv cals, 4 narrow-from-wide updates, 15 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 14  599.984  599.984
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 58 score/deriv cals, 6 narrow-from-wide updates, 13 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 15  599.984  599.984
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 16  593.723  593.723
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 47 score/deriv cals, 8 narrow-from-wide updates, 9 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 17  593.723  593.723
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 63 score/deriv cals, 10 narrow-from-wide updates, 13 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 18  593.723  593.723
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 63 score/deriv cals, 8 narrow-from-wide updates, 13 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 19  593.723  593.723
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 78 score/deriv cals, 16 narrow-from-wide updates, 13 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 20  593.723  593.723
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 67 score/deriv cals, 10 narrow-from-wide updates, 11 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 21  593.723  593.723
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 64 score/deriv cals, 10 narrow-from-wide updates, 12 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 22  593.723  593.723
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 34 score/deriv cals, 7 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 23  593.723  593.723
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 2 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 24  584.401  584.401
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 95 score/deriv cals, 14 narrow-from-wide updates, 19 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 25  584.401  584.401
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 26  584.142  584.142
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 27  584.12  584.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 28  583.902  583.902
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 29  583.793  583.793
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 30  583.631  583.631
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 31  583.49  583.49
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 32  583.449  583.449
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 65 score/deriv cals, 5 narrow-from-wide updates, 21 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 33  583.449  583.449
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 38 score/deriv cals, 6 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 34  583.449  583.449
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 35  583.449  583.449
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 33 score/deriv cals, 6 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 36  583.449  583.449
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 81 score/deriv cals, 13 narrow-from-wide updates, 14 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 37  583.449  583.449
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 47 score/deriv cals, 7 narrow-from-wide updates, 10 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 38  583.449  583.449
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 50 score/deriv cals, 7 narrow-from-wide updates, 12 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 39  583.449  583.449
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 44 score/deriv cals, 11 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 40  583.449  583.449
protocols.loops.KinematicWrapper: KinematicMover closed in 5 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 41  584.48  583.449
protocols.loops.KinematicWrapper: KinematicMover closed in 3 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 4 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 42  584.551  583.449
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 43  584.454  583.449
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 44  584.35  583.449
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 41 score/deriv cals, 4 narrow-from-wide updates, 10 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 45  584.35  583.449
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 49 score/deriv cals, 7 narrow-from-wide updates, 10 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 46  584.35  583.449
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 47  584.405  583.449
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 40 score/deriv cals, 8 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 48  584.405  583.449
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 49  584.275  583.449
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 2377 rotamers at 70 positions.
core.pack.pack_rotamers: IG: 2918412 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 50  566.382  566.382
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 63 score/deriv cals, 11 narrow-from-wide updates, 13 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 51  566.382  566.382
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 61 score/deriv cals, 13 narrow-from-wide updates, 10 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 52  566.382  566.382
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 44 score/deriv cals, 4 narrow-from-wide updates, 10 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 53  566.382  566.382
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 54  565.954  565.954
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 55  565.896  565.896
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 51 score/deriv cals, 9 narrow-from-wide updates, 12 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 56  565.896  565.896
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 59 score/deriv cals, 10 narrow-from-wide updates, 15 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 57  565.896  565.896
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 58  565.912  565.896
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 59  566.045  565.896
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 88 score/deriv cals, 13 narrow-from-wide updates, 15 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 60  566.045  565.896
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 61  565.442  565.442
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 62  564.474  564.474
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 63  564.462  564.462
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 40 score/deriv cals, 7 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 64  564.462  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 65  564.497  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 66  564.497  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 67  564.878  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 3 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 68  564.878  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 69  564.561  564.462
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 53 score/deriv cals, 8 narrow-from-wide updates, 12 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 70  564.561  564.462
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 59 score/deriv cals, 12 narrow-from-wide updates, 12 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 71  564.561  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 72  564.53  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 3 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 73  564.53  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 74  564.531  564.462
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 62 score/deriv cals, 10 narrow-from-wide updates, 12 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 75  564.531  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 76  564.531  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 77  565.288  564.462
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 81 score/deriv cals, 17 narrow-from-wide updates, 12 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 78  565.288  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 79  564.789  564.462
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 58 score/deriv cals, 13 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 80  564.789  564.462
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 58 score/deriv cals, 17 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 81  564.789  564.462
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 4 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 82  564.365  564.365
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 83  564.732  564.365
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 84  564.206  564.206
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 85  564.073  564.073
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 86  564.061  564.061
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 51 score/deriv cals, 12 narrow-from-wide updates, 9 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 87  564.061  564.061
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 36 score/deriv cals, 7 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 88  564.061  564.061
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 89  563.784  563.784
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 90  563.784  563.784
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 55 score/deriv cals, 7 narrow-from-wide updates, 14 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 91  563.784  563.784
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 61 score/deriv cals, 9 narrow-from-wide updates, 11 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 92  563.784  563.784
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 48 score/deriv cals, 8 narrow-from-wide updates, 11 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 93  563.784  563.784
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 52 score/deriv cals, 11 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 94  563.784  563.784
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 95  563.784  563.784
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 96  563.941  563.784
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 97  563.941  563.784
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 98  563.676  563.676
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 63 score/deriv cals, 8 narrow-from-wide updates, 20 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 99  563.676  563.676
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 2420 rotamers at 71 positions.
core.pack.pack_rotamers: IG: 2978820 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 100  562.321  562.321
devel.AnchoredDesign.AnchoredRefineMover: fullatom score exiting refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1284.473   -1027.578
 fa_rep                       0.440    1161.377     511.006
 fa_sol                       0.650     822.341     534.522
 fa_intra_rep                 0.004     770.189       3.081
 pro_close                    1.000      51.059      51.059
 fa_pair                      0.490     -37.427     -18.339
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -78.407     -91.737
 hbond_bb_sc                  1.170     -21.824     -25.534
 hbond_sc                     1.100      -8.052      -8.857
 dslf_ss_dst                  0.500      46.090      23.045
 dslf_cs_ang                  2.000       9.906      19.813
 dslf_ss_dih                  5.000       2.857      14.283
 dslf_ca_dih                  5.000       0.248       1.242
 rama                         0.200      92.086      18.417
 omega                        0.500     215.367     107.684
 fa_dun                       0.560     925.704     518.394
 p_aa_pp                      0.320     -83.624     -26.760
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       2.589       5.177
---------------------------------------------------
 Total weighted score:                      562.321
One refine took 93.19 seconds
devel.AnchoredDesign.AnchoredRefineMover: refine steps complete
devel.AnchoredDesign.LoopAnalyzerMover: running LoopAnalyzerMover
devel.AnchoredDesign.InterfaceAnalyzerMover: Making an interface set with default calculator.
core.pack.task: Packer task: initialize from command line() 
devel.AnchoredDesign.InterfaceAnalyzerMover: NULL scorefunction.  Initialize from cmd line.
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
protocols.moves.RigidBodyMover: Translate: Jump (before): RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -7.98893 -14.9744 -21.5521  
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -194.403 -961.856 240.489  
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 57 rotamers at 57 positions.
core.pack.pack_rotamers: IG: 156556 bytes
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 57 rotamers at 57 positions.
core.pack.pack_rotamers: IG: 141220 bytes
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/phi.theta.36.HS.resmooth
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/phi.theta.36.SS.resmooth
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of complex: -4.41144
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of separated: 8.49377
devel.AnchoredDesign.InterfaceAnalyzerMover: radii: [ 1.89, 1.89, 2.1285, 2.0115, 1.9485, 1.665, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.701, 1.44, 2.1285, 1.89, 1.44, 2.0425, 0.54, 1.08, 1.08, 0.54, 1.44, 1.71, 2.07, 2.22, 2.36, 1.09, 0.78, 0.65, 1.185, 1.2986, 1.3638, 1.7638, 0, 0, 0, ]
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 10 rsd= 242  ( NH1) Acc Res: ASP171 Acc Atm:  atomno= 7 rsd= 171  ( OD1) Hbond_SASA: 1.87695 Possible SASA: 202.711 SASA ratio: 0.00925926 Initial HBond E: -1.14308 Adjusted: -1.12191
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: ASP171 Acc Atm:  atomno= 8 rsd= 171  ( OD2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.19855 Adjusted: -1.19855
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: SER177 Donor Atm:  atomno= 1 rsd= 177  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.06577 Adjusted: -1.06577
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: SER192 Acc Atm:  atomno= 4 rsd= 192  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.792237 Adjusted: -0.792237
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: GLY196 Acc Atm:  atomno= 4 rsd= 196  ( O  ) Hbond_SASA: 2.5026 Possible SASA: 202.711 SASA ratio: 0.0123457 Initial HBond E: -0.636686 Adjusted: -0.620965
devel.AnchoredDesign.InterfaceAnalyzerMover: Computing delta unsat polar residues...
devel.AnchoredDesign.AnchoredDesignMover: One perturb/refine took 121.23 seconds
devel.AnchoredDesign.AnchoredDesignMover: CA_sup_RMSD for this trajectory: 2.79883
devel.AnchoredDesign.AnchoredDesignMover: loop_CA_sup_RMSD for this trajectory: 2.13245
devel.AnchoredDesign.AnchoredDesignMover: chain 1 sup_RMSD for this trajectory: 0
devel.AnchoredDesign.AnchoredDesignMover: chain 2 sup_RMSD for this trajectory: 1.15472
devel.AnchoredDesign.AnchoredDesignMover: chain 1 RMSD for this trajectory: 0
devel.AnchoredDesign.AnchoredDesignMover: chain 2 RMSD for this trajectory: 6.69626
devel.AnchoredDesign.AnchoredDesignMover: interface for rmsd 18 20 21 22 23 24 25 26 37 38 39 40 41 42 43 78 79 80 81 84 121 122 123 128 129 131 152 155 171 172 173 174 175 176 177 178 179 191 192 193 194 195 196 197 202 204 205 206 238 239 240 241 242 243 244 245 246 261 262 263 264 265 266
devel.AnchoredDesign.AnchoredDesignMover: interface backbone RMSD for this trajectory: 1.9708
protocols.jd2.JobDistributor: 1zr0.CD_0002 reported success in 123 seconds
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
protocols.jd2.PDBJobInputter: filling pose from saved copy 1zr0.CD.pdb
devel.AnchoredDesign.Anchor_Movers: running delete_interface_sidechains
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 5811 rotamers at 74 positions.
core.pack.pack_rotamers: IG: 18793412 bytes
devel.AnchoredDesign.Anchor_Movers: ran delete_interface_sidechains
devel.AnchoredDesign.AnchorClasses: checking/(re)setting loop cutpoints; loops become:
devel.AnchoredDesign.AnchorClasses: LOOP 237 244 238 1 1
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  EDGE 223 242 1  EDGE 242 239 -1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 238 -1 
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  JEDGE 223 242 1 C N  INTRA_RES_STUB  EDGE 242 239 -1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 238 -1 
devel.AnchoredDesign.Anchor_Movers: pose says 'is_cutpoint(#)': 223 238 286 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_LOWER': 238 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_UPPER': 239 
devel.AnchoredDesign.AnchoredPerturbMover: entering perturb steps
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of starting PDB: 4632.54
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1309.917   -1047.934
 fa_rep                       0.440    7324.005    3222.562
 fa_sol                       0.650     832.138     540.890
 fa_intra_rep                 0.004     768.687       3.075
 pro_close                    1.000     133.729     133.729
 fa_pair                      0.490     -36.893     -18.078
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -77.703     -90.912
 hbond_bb_sc                  1.170     -22.854     -26.739
 hbond_sc                     1.100      -8.744      -9.619
 dslf_ss_dst                  0.500     106.363      53.181
 dslf_cs_ang                  2.000       7.716      15.432
 dslf_ss_dih                  5.000       2.649      13.243
 dslf_ca_dih                  5.000       0.212       1.062
 rama                         0.200      90.006      18.001
 omega                        0.500     207.924     103.962
 fa_dun                       0.560     919.265     514.788
 p_aa_pp                      0.320     -75.208     -24.067
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000     638.279    1276.559
---------------------------------------------------
 Total weighted score:                     4632.540
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of starting PDB: 1260.1
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       6.530      13.061
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -76.761     -76.761
 rama                         1.000      90.006      90.006
 chainbreak                   2.000     638.279    1276.559
---------------------------------------------------
 Total weighted score:                     1260.101
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating fragment-based perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover:    Current     Low    total cycles =50
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 1  30.4268  30.4268
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 2  29.8073  29.8073
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 238/240/243
devel.AnchoredDesign.AnchoredPerturbMover: 3  -52.9317  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 4  -52.9317  -52.9317
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 5  -52.9317  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 6  -52.9317  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 7  -52.9317  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 8  -52.9317  -52.9317
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 9  -52.9317  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 10  -52.9001  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 11  -52.9001  -52.9317
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 12  -52.8075  -52.9317
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.221115 Finite Diff= 0.138608
devel.AnchoredDesign.AnchoredPerturbMover: 13  -52.8075  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 14  -52.8075  -52.9317
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
devel.AnchoredDesign.AnchoredPerturbMover: 15  -52.5428  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 16  -52.5428  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 17  -52.5428  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 18  -52.5428  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 19  -52.5428  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.optimization.LineMinimizer: Inaccurate G! step= 1.90735e-06 Deriv= -0.971912 Finite Diff= -0.0817798
devel.AnchoredDesign.AnchoredPerturbMover: 20  -52.5428  -52.9317
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.114522 Finite Diff= -0.00766831
devel.AnchoredDesign.AnchoredPerturbMover: 21  -52.8777  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.748327 Finite Diff= 0.0501512
devel.AnchoredDesign.AnchoredPerturbMover: 22  -52.8777  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 23  -52.8811  -52.9317
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 24  -52.8811  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 25  -52.8811  -52.9317
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 26  -52.8823  -52.9317
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 27  -52.8823  -52.9317
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
devel.AnchoredDesign.AnchoredPerturbMover: 28  -55.7938  -55.7938
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.308009 Finite Diff= 0.114419
devel.AnchoredDesign.AnchoredPerturbMover: 29  -55.7938  -55.7938
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 30  -56.1191  -56.1191
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 31  -56.1191  -56.1191
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 32  -56.1314  -56.1314
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 33  -56.1314  -56.1314
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.806661 Finite Diff= 0.328485
devel.AnchoredDesign.AnchoredPerturbMover: 34  -56.1314  -56.1314
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 35  -56.1314  -56.1314
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 36  -56.1314  -56.1314
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 37  -57.0651  -57.0651
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 38  -57.0651  -57.0651
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 39  -57.0651  -57.0651
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 40  -57.2648  -57.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 41  -55.2796  -57.2648
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 42  -55.2796  -57.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 43  -55.3463  -57.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 44  -55.3633  -57.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.152153 Finite Diff= 0.0775492
devel.AnchoredDesign.AnchoredPerturbMover: 45  -55.3633  -57.2648
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 46  -55.3633  -57.2648
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 47  -55.3633  -57.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 48  -55.365  -57.2648
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 49  -55.365  -57.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
devel.AnchoredDesign.AnchoredPerturbMover: 50  -55.3447  -57.2648
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of final perturbed PDB: -57.2648
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.300       0.601
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -76.806     -76.806
 rama                         1.000      61.085      61.085
 chainbreak                   2.000       0.310       0.619
---------------------------------------------------
 Total weighted score:                      -57.265
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 2357 rotamers at 70 positions.
core.pack.pack_rotamers: IG: 2674272 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 107 score/deriv cals, 11 narrow-from-wide updates, 10 full updates.
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of perturbed, refullatomized, repacked/minimized PDB: 528.619
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1300.448   -1040.359
 fa_rep                       0.440    1166.617     513.312
 fa_sol                       0.650     832.587     541.182
 fa_intra_rep                 0.004     781.274       3.125
 pro_close                    1.000      51.145      51.145
 fa_pair                      0.490     -37.622     -18.435
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -77.857     -91.093
 hbond_bb_sc                  1.170     -21.671     -25.356
 hbond_sc                     1.100      -9.163     -10.079
 dslf_ss_dst                  0.500      -0.471      -0.236
 dslf_cs_ang                  2.000       7.074      14.147
 dslf_ss_dih                  5.000       2.990      14.952
 dslf_ca_dih                  5.000       0.181       0.905
 rama                         0.200      61.764      12.353
 omega                        0.500     216.255     108.128
 fa_dun                       0.560     939.176     525.939
 p_aa_pp                      0.320     -83.329     -26.665
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       1.125       2.251
---------------------------------------------------
 Total weighted score:                      528.619
devel.AnchoredDesign.AnchoredPerturbMover: One perturb took 11.44 seconds
devel.AnchoredDesign.AnchoredPerturbMover: perturb steps complete
devel.AnchoredDesign.AnchoredRefineMover: entering refine steps
devel.AnchoredDesign.AnchoredRefineMover: fullatom score upon entering refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1300.448   -1040.359
 fa_rep                       0.440    1166.617     513.312
 fa_sol                       0.650     832.587     541.182
 fa_intra_rep                 0.004     781.274       3.125
 pro_close                    1.000      51.145      51.145
 fa_pair                      0.490     -37.622     -18.435
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -77.857     -91.093
 hbond_bb_sc                  1.170     -21.671     -25.356
 hbond_sc                     1.100      -9.163     -10.079
 dslf_ss_dst                  0.500      -0.471      -0.236
 dslf_cs_ang                  2.000       7.074      14.147
 dslf_ss_dih                  5.000       2.990      14.952
 dslf_ca_dih                  5.000       0.181       0.905
 rama                         0.200      61.764      12.353
 omega                        0.500     216.255     108.128
 fa_dun                       0.560     939.176     525.939
 p_aa_pp                      0.320     -83.329     -26.665
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       1.125       2.251
---------------------------------------------------
 Total weighted score:                      528.619
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating Small & ShearMover for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: using no-sidechains MoveMap for minimization in normal refine cycles
devel.AnchoredDesign.AnchoredRefineMover:    Current     Low    total cycles =100, second resfile at 67
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 1  527.234  527.234
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 2  526.734  526.734
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 6 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 3  524.555  524.555
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 4  524.468  524.468
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 5  524.227  524.227
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 6  524.092  524.092
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 7  524.113  524.092
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 8  524.113  524.092
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 5 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 9  524.113  524.092
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 6 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 10  518.341  518.341
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 11  518.312  518.312
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 12  518.273  518.273
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 31 score/deriv cals, 5 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 13  514.743  514.743
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 14  508.167  508.167
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 15  507.959  507.959
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 16  507.959  507.959
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 44 score/deriv cals, 5 narrow-from-wide updates, 9 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 17  505.384  505.384
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 30 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 18  501.924  501.924
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 40 score/deriv cals, 5 narrow-from-wide updates, 9 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 19  501.983  501.924
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 6 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 20  501.983  501.924
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 33 score/deriv cals, 5 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 21  498.432  498.432
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 22  498.432  498.432
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 5 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 23  498.432  498.432
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 24  495.118  495.118
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 38 score/deriv cals, 8 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 25  495.118  495.118
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 30 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 26  495.118  495.118
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 27  495.066  495.066
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 28  495.034  495.034
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 29  493.595  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 32 score/deriv cals, 5 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 30  493.595  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 44 score/deriv cals, 4 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 31  493.595  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 34 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 32  493.595  493.595
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 33  493.652  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 38 score/deriv cals, 4 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 34  493.652  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 26 score/deriv cals, 2 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 35  493.652  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 40 score/deriv cals, 6 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 36  493.652  493.595
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 37  493.76  493.595
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 42 score/deriv cals, 8 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 38  493.76  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 35 score/deriv cals, 7 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 39  493.76  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 40  493.76  493.595
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 41  493.682  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 35 score/deriv cals, 7 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 42  493.682  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 36 score/deriv cals, 6 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 43  493.682  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 36 score/deriv cals, 5 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 44  493.682  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 40 score/deriv cals, 6 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 45  493.682  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 31 score/deriv cals, 4 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 46  493.682  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 32 score/deriv cals, 6 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 47  493.682  493.595
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 48  493.624  493.595
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 42 score/deriv cals, 5 narrow-from-wide updates, 9 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 49  493.624  493.595
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 2592 rotamers at 73 positions.
core.pack.pack_rotamers: IG: 3169168 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 7 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 50  481.774  481.774
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 34 score/deriv cals, 7 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 51  481.774  481.774
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 28 score/deriv cals, 4 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 52  481.774  481.774
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 53  481.718  481.718
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 54  481.718  481.718
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 19 score/deriv cals, 6 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 55  481.164  481.164
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 36 score/deriv cals, 5 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 56  481.164  481.164
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 57  481.116  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 34 score/deriv cals, 7 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 58  481.116  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 33 score/deriv cals, 8 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 59  481.116  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 60  481.388  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 0 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 61  481.388  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 62  481.366  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 33 score/deriv cals, 5 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 63  481.366  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 41 score/deriv cals, 9 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 64  481.366  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 32 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 65  481.366  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 66  481.135  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 67  481.135  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 68  481.135  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 69  481.772  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 43 score/deriv cals, 6 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 70  483.051  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 71  482.001  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 45 score/deriv cals, 10 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 72  482.001  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 73  482.221  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 28 score/deriv cals, 3 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 74  482.221  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 75  482.287  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 6 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 76  482.287  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 77  482.23  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 4 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 78  482.23  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 30 score/deriv cals, 4 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 79  482.23  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 32 score/deriv cals, 3 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 80  482.23  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 27 score/deriv cals, 6 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 81  482.23  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 42 score/deriv cals, 5 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 82  482.23  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 41 score/deriv cals, 10 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 83  482.253  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 65 score/deriv cals, 10 narrow-from-wide updates, 12 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 84  482.253  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 85  481.296  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 86  481.143  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 37 score/deriv cals, 3 narrow-from-wide updates, 9 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 87  481.143  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 51 score/deriv cals, 8 narrow-from-wide updates, 10 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 88  481.143  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 89  481.133  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 90  481.14  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 38 score/deriv cals, 5 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 91  481.14  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 92  481.193  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 93  481.145  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 45 score/deriv cals, 6 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 94  481.145  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 95  481.798  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 96  481.799  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 97  481.85  481.116
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 54 score/deriv cals, 9 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 98  481.85  481.116
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 99  481.365  481.116
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 2586 rotamers at 73 positions.
core.pack.pack_rotamers: IG: 3123236 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 100  477.994  477.994
devel.AnchoredDesign.AnchoredRefineMover: fullatom score exiting refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1296.283   -1037.027
 fa_rep                       0.440    1096.029     482.253
 fa_sol                       0.650     826.666     537.333
 fa_intra_rep                 0.004     774.966       3.100
 pro_close                    1.000      51.043      51.043
 fa_pair                      0.490     -36.974     -18.117
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -79.771     -93.332
 hbond_bb_sc                  1.170     -23.037     -26.953
 hbond_sc                     1.100      -9.643     -10.607
 dslf_ss_dst                  0.500      -6.802      -3.401
 dslf_cs_ang                  2.000       8.542      17.083
 dslf_ss_dih                  5.000       2.630      13.152
 dslf_ca_dih                  5.000       0.227       1.134
 rama                         0.200      72.245      14.449
 omega                        0.500     209.284     104.642
 fa_dun                       0.560     920.573     515.521
 p_aa_pp                      0.320     -81.761     -26.164
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.240       0.481
---------------------------------------------------
 Total weighted score:                      477.994
One refine took 63.15 seconds
devel.AnchoredDesign.AnchoredRefineMover: refine steps complete
devel.AnchoredDesign.LoopAnalyzerMover: running LoopAnalyzerMover
devel.AnchoredDesign.InterfaceAnalyzerMover: Making an interface set with default calculator.
core.pack.task: Packer task: initialize from command line() 
protocols.moves.RigidBodyMover: Translate: Jump (before): RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -7.98893 -14.9744 -21.5521  
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -159.872 -981.181 186.719  
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 57 rotamers at 57 positions.
core.pack.pack_rotamers: IG: 166780 bytes
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 57 rotamers at 57 positions.
core.pack.pack_rotamers: IG: 150308 bytes
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of complex: -15.7761
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of separated: -1.28756
devel.AnchoredDesign.InterfaceAnalyzerMover: radii: [ 1.89, 1.89, 2.1285, 2.0115, 1.9485, 1.665, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.701, 1.44, 2.1285, 1.89, 1.44, 2.0425, 0.54, 1.08, 1.08, 0.54, 1.44, 1.71, 2.07, 2.22, 2.36, 1.09, 0.78, 0.65, 1.185, 1.2986, 1.3638, 1.7638, 0, 0, 0, ]
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: LEU244 Donor Atm:  atomno= 1 rsd= 244  ( N  ) Acc Res: PHE24 Acc Atm:  atomno= 4 rsd= 24  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.31516 Adjusted: -1.31516
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: HIS40 Acc Atm:  atomno= 10 rsd= 40  ( NE2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.0512173 Adjusted: -0.0512173
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 10 rsd= 242  ( NH1) Acc Res: ASP171 Acc Atm:  atomno= 7 rsd= 171  ( OD1) Hbond_SASA: 1.87695 Possible SASA: 202.711 SASA ratio: 0.00925926 Initial HBond E: -1.14635 Adjusted: -1.12512
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: ASP171 Acc Atm:  atomno= 8 rsd= 171  ( OD2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.20426 Adjusted: -1.20426
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLY175 Donor Atm:  atomno= 1 rsd= 175  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.00577395 Adjusted: -0.00577395
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: SER177 Donor Atm:  atomno= 1 rsd= 177  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.622309 Adjusted: -0.622309
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: SER192 Acc Atm:  atomno= 4 rsd= 192  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.219757 Adjusted: -0.219757
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLY194 Donor Atm:  atomno= 1 rsd= 194  ( N  ) Acc Res: PRO240 Acc Atm:  atomno= 4 rsd= 240  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.800029 Adjusted: -0.800029
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: GLY196 Acc Atm:  atomno= 4 rsd= 196  ( O  ) Hbond_SASA: 3.12825 Possible SASA: 202.711 SASA ratio: 0.0154321 Initial HBond E: -0.636686 Adjusted: -0.617035
devel.AnchoredDesign.InterfaceAnalyzerMover: Computing delta unsat polar residues...
devel.AnchoredDesign.AnchoredDesignMover: One perturb/refine took 83.47 seconds
devel.AnchoredDesign.AnchoredDesignMover: CA_sup_RMSD for this trajectory: 0.633999
devel.AnchoredDesign.AnchoredDesignMover: loop_CA_sup_RMSD for this trajectory: 0.459204
devel.AnchoredDesign.AnchoredDesignMover: chain 1 sup_RMSD for this trajectory: 0
devel.AnchoredDesign.AnchoredDesignMover: chain 2 sup_RMSD for this trajectory: 0.278338
devel.AnchoredDesign.AnchoredDesignMover: chain 1 RMSD for this trajectory: 0
devel.AnchoredDesign.AnchoredDesignMover: chain 2 RMSD for this trajectory: 2.00871
devel.AnchoredDesign.AnchoredDesignMover: interface for rmsd 18 20 21 22 23 24 25 26 37 38 39 40 41 42 43 78 79 80 81 84 121 122 123 128 129 131 152 155 171 172 173 174 175 176 177 178 179 191 192 193 194 195 196 197 202 204 205 206 238 239 240 241 242 243 244 245 246 261 262 263 264 265 266
devel.AnchoredDesign.AnchoredDesignMover: interface backbone RMSD for this trajectory: 0.267293
protocols.jd2.JobDistributor: 1zr0.CD_0003 reported success in 84 seconds
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
protocols.jd2.PDBJobInputter: filling pose from saved copy 1zr0.CD.pdb
devel.AnchoredDesign.Anchor_Movers: running delete_interface_sidechains
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 5811 rotamers at 74 positions.
core.pack.pack_rotamers: IG: 18793412 bytes
devel.AnchoredDesign.Anchor_Movers: ran delete_interface_sidechains
devel.AnchoredDesign.AnchorClasses: checking/(re)setting loop cutpoints; loops become:
devel.AnchoredDesign.AnchorClasses: LOOP 237 244 240 1 1
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  EDGE 223 242 1  EDGE 242 241 -1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 240 -1 
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  JEDGE 223 242 1 C N  INTRA_RES_STUB  EDGE 242 241 -1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 240 -1 
devel.AnchoredDesign.Anchor_Movers: pose says 'is_cutpoint(#)': 223 240 286 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_LOWER': 240 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_UPPER': 241 
devel.AnchoredDesign.AnchoredPerturbMover: entering perturb steps
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of starting PDB: 3175.63
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1306.271   -1045.017
 fa_rep                       0.440    5592.749    2460.809
 fa_sol                       0.650     832.328     541.013
 fa_intra_rep                 0.004     768.678       3.075
 pro_close                    1.000     133.729     133.729
 fa_pair                      0.490     -36.893     -18.078
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -78.918     -92.335
 hbond_bb_sc                  1.170     -22.661     -26.513
 hbond_sc                     1.100      -8.795      -9.674
 dslf_ss_dst                  0.500     100.445      50.223
 dslf_cs_ang                  2.000      10.504      21.008
 dslf_ss_dih                  5.000       5.337      26.683
 dslf_ca_dih                  5.000       0.243       1.215
 rama                         0.200      90.006      18.001
 omega                        0.500     207.791     103.896
 fa_dun                       0.560     919.265     514.788
 p_aa_pp                      0.320     -75.208     -24.067
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000     281.734     563.469
---------------------------------------------------
 Total weighted score:                     3175.628
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of starting PDB: 535.045
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       1.155       2.310
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -77.977     -77.977
 rama                         1.000      90.006      90.006
 chainbreak                   2.000     281.734     563.469
---------------------------------------------------
 Total weighted score:                      535.045
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating fragment-based perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover:    Current     Low    total cycles =50
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 1  -33.1122  -33.1122
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.555894 Finite Diff= 0.174926
devel.AnchoredDesign.AnchoredPerturbMover: 2  -33.1122  -33.1122
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.optimization.LineMinimizer: Inaccurate G! step= 2.98023e-08 Deriv= -11.6185 Finite Diff= 1.66387
devel.AnchoredDesign.AnchoredPerturbMover: 3  -33.1122  -33.1122
protocols.loops.KinematicWrapper: KinematicMover closed in 3 cycles; loop was begin/middle/end 240/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 4  -42.3095  -42.3095
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 5  -42.3095  -42.3095
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 238/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 6  -50.8804  -50.8804
protocols.loops.KinematicWrapper: KinematicMover closed in 3 cycles; loop was begin/middle/end 237/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 7  -50.8804  -50.8804
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 8  -50.8804  -50.8804
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 9  -50.8804  -50.8804
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 10  -50.8804  -50.8804
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -1.80666 Finite Diff= 0.151171
devel.AnchoredDesign.AnchoredPerturbMover: 11  -51.1171  -51.1171
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
devel.AnchoredDesign.AnchoredPerturbMover: 12  -51.1171  -51.1171
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 13  -51.4759  -51.4759
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
devel.AnchoredDesign.AnchoredPerturbMover: 14  -51.946  -51.946
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 15  -51.946  -51.946
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 16  -51.946  -51.946
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 17  -51.946  -51.946
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 18  -51.946  -51.946
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 19  -51.946  -51.946
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 20  -51.946  -51.946
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.262476 Finite Diff= 0.000104308
devel.AnchoredDesign.AnchoredPerturbMover: 21  -51.946  -51.946
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
devel.AnchoredDesign.AnchoredPerturbMover: 22  -51.946  -51.946
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 23  -51.946  -51.946
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 24  -51.9837  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 25  -51.9504  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 26  -51.9504  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 27  -51.9504  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 28  -51.9504  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 29  -51.9508  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 30  -51.9508  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 31  -51.9508  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 32  -51.9508  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 33  -51.9508  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 34  -51.9508  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 35  -51.951  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 36  -51.951  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 37  -51.951  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 38  -51.951  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 39  -51.951  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 40  -51.9511  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 41  -51.9511  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 42  -51.9511  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 43  -51.9511  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 44  -51.9511  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 45  -51.9512  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 46  -51.9512  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 47  -51.9512  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 48  -51.9512  -51.9837
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 49  -51.9512  -51.9837
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 50  -51.9512  -51.9837
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of final perturbed PDB: -51.9837
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.443       0.887
 hbond_sr_bb                  1.000     -42.786     -42.786
 hbond_lr_bb                  1.000     -77.757     -77.757
 rama                         1.000      66.670      66.670
 chainbreak                   2.000       0.501       1.002
---------------------------------------------------
 Total weighted score:                      -51.984
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 2476 rotamers at 70 positions.
core.pack.pack_rotamers: IG: 2816492 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 60 score/deriv cals, 10 narrow-from-wide updates, 11 full updates.
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of perturbed, refullatomized, repacked/minimized PDB: 569.098
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1293.683   -1034.946
 fa_rep                       0.440    1156.384     508.809
 fa_sol                       0.650     830.354     539.730
 fa_intra_rep                 0.004     781.839       3.127
 pro_close                    1.000      51.168      51.168
 fa_pair                      0.490     -35.532     -17.411
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -77.728     -90.942
 hbond_bb_sc                  1.170     -19.833     -23.204
 hbond_sc                     1.100     -10.564     -11.621
 dslf_ss_dst                  0.500      37.313      18.656
 dslf_cs_ang                  2.000       8.535      17.070
 dslf_ss_dih                  5.000       5.104      25.520
 dslf_ca_dih                  5.000       0.287       1.435
 rama                         0.200      67.569      13.514
 omega                        0.500     213.995     106.997
 fa_dun                       0.560     948.450     531.132
 p_aa_pp                      0.320     -80.793     -25.854
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       1.257       2.513
---------------------------------------------------
 Total weighted score:                      569.098
devel.AnchoredDesign.AnchoredPerturbMover: One perturb took 12.64 seconds
devel.AnchoredDesign.AnchoredPerturbMover: perturb steps complete
devel.AnchoredDesign.AnchoredRefineMover: entering refine steps
devel.AnchoredDesign.AnchoredRefineMover: fullatom score upon entering refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1293.683   -1034.946
 fa_rep                       0.440    1156.384     508.809
 fa_sol                       0.650     830.354     539.730
 fa_intra_rep                 0.004     781.839       3.127
 pro_close                    1.000      51.168      51.168
 fa_pair                      0.490     -35.532     -17.411
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -77.728     -90.942
 hbond_bb_sc                  1.170     -19.833     -23.204
 hbond_sc                     1.100     -10.564     -11.621
 dslf_ss_dst                  0.500      37.313      18.656
 dslf_cs_ang                  2.000       8.535      17.070
 dslf_ss_dih                  5.000       5.104      25.520
 dslf_ca_dih                  5.000       0.287       1.435
 rama                         0.200      67.569      13.514
 omega                        0.500     213.995     106.997
 fa_dun                       0.560     948.450     531.132
 p_aa_pp                      0.320     -80.793     -25.854
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       1.257       2.513
---------------------------------------------------
 Total weighted score:                      569.098
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating Small & ShearMover for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: using no-sidechains MoveMap for minimization in normal refine cycles
devel.AnchoredDesign.AnchoredRefineMover:    Current     Low    total cycles =100, second resfile at 67
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 1  569.098  569.098
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 2  569.795  569.098
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 3  566.95  566.95
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 1 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 4  566.95  566.95
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 3 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 5  566.95  566.95
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 6  566.95  566.95
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 7  566.515  566.515
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 26 score/deriv cals, 3 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 8  563.631  563.631
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 9  562.732  562.732
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 2 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 10  562.732  562.732
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 2 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 11  562.732  562.732
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 12  558.427  558.427
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 13  558.427  558.427
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 14  557.733  557.733
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 15  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 4 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 16  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 17  557.733  557.733
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 18  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 2 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 19  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 6 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 20  557.733  557.733
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 21  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 22  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 6 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 23  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 1 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 24  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 25  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 26  557.733  557.733
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 27  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 2 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 28  557.733  557.733
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 29  557.733  557.733
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 30  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 31  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 14 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 32  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 2 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 33  557.733  557.733
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 34  557.733  557.733
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 35  557.733  557.733
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 0 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 36  557.733  557.733
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 37  557.733  557.733
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 1 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 38  557.596  557.596
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 4 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 39  557.596  557.596
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 40  557.596  557.596
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 41  557.596  557.596
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 2 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 42  557.596  557.596
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 43  557.795  557.596
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 44  557.795  557.596
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 45  557.795  557.596
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 46  558.045  557.596
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 47  558.045  557.596
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 48  558.045  557.596
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 49  558.045  557.596
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 2504 rotamers at 70 positions.
core.pack.pack_rotamers: IG: 3024628 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 50  550.431  550.431
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 51  550.431  550.431
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 52  549.872  549.872
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 14 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 53  549.375  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 28 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 54  549.375  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 55  549.375  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 56  549.375  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 57  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 14 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 58  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 59  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 60  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 61  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 40 score/deriv cals, 6 narrow-from-wide updates, 9 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 62  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 63  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 64  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 65  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 35 score/deriv cals, 4 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 66  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 67  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 68  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 5 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 69  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 70  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 71  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 72  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 28 score/deriv cals, 4 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 73  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 14 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 74  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 75  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 76  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 77  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 78  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 14 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 79  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 80  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 34 score/deriv cals, 5 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 81  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 82  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 83  550.62  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 2 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 84  550.62  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 85  551.707  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 86  551.244  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 87  551.244  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 88  551.244  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 89  551.244  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 90  551.244  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 91  554.249  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 92  549.685  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 93  549.685  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 94  549.685  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 95  549.685  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 96  549.685  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 19 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 97  549.685  549.375
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 2 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 98  549.685  549.375
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 32 score/deriv cals, 4 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 99  549.685  549.375
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 2510 rotamers at 70 positions.
core.pack.pack_rotamers: IG: 3054240 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 100  549.632  549.375
devel.AnchoredDesign.AnchoredRefineMover: fullatom score exiting refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1294.810   -1035.848
 fa_rep                       0.440    1150.468     506.206
 fa_sol                       0.650     831.958     540.773
 fa_intra_rep                 0.004     768.898       3.076
 pro_close                    1.000      51.367      51.367
 fa_pair                      0.490     -36.242     -17.759
 hbond_sr_bb                  0.585     -42.796     -25.036
 hbond_lr_bb                  1.170     -77.702     -90.911
 hbond_bb_sc                  1.170     -20.622     -24.128
 hbond_sc                     1.100     -10.933     -12.026
 dslf_ss_dst                  0.500      31.770      15.885
 dslf_cs_ang                  2.000       9.684      19.368
 dslf_ss_dih                  5.000       3.384      16.921
 dslf_ca_dih                  5.000       0.288       1.441
 rama                         0.200      71.853      14.371
 omega                        0.500     213.559     106.779
 fa_dun                       0.560     937.116     524.785
 p_aa_pp                      0.320     -80.376     -25.720
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.769       1.539
---------------------------------------------------
 Total weighted score:                      549.500
One refine took 54.18 seconds
devel.AnchoredDesign.AnchoredRefineMover: refine steps complete
devel.AnchoredDesign.LoopAnalyzerMover: running LoopAnalyzerMover
devel.AnchoredDesign.InterfaceAnalyzerMover: Making an interface set with default calculator.
core.pack.task: Packer task: initialize from command line() 
protocols.moves.RigidBodyMover: Translate: Jump (before): RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -7.98893 -14.9744 -21.5521  
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -168.896 -966.055 242.181  
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 54 rotamers at 54 positions.
core.pack.pack_rotamers: IG: 147040 bytes
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 54 rotamers at 54 positions.
core.pack.pack_rotamers: IG: 132840 bytes
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of complex: -0.874502
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of separated: 6.4028
devel.AnchoredDesign.InterfaceAnalyzerMover: radii: [ 1.89, 1.89, 2.1285, 2.0115, 1.9485, 1.665, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.701, 1.44, 2.1285, 1.89, 1.44, 2.0425, 0.54, 1.08, 1.08, 0.54, 1.44, 1.71, 2.07, 2.22, 2.36, 1.09, 0.78, 0.65, 1.185, 1.2986, 1.3638, 1.7638, 0, 0, 0, ]
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG247 Donor Atm:  atomno= 11 rsd= 247  ( NH2) Acc Res: TYR22 Acc Atm:  atomno= 12 rsd= 22  ( OH ) Hbond_SASA: 18.7695 Possible SASA: 202.711 SASA ratio: 0.0925926 Initial HBond E: -0.319574 Adjusted: -0.260393
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 10 rsd= 242  ( NH1) Acc Res: ASP171 Acc Atm:  atomno= 7 rsd= 171  ( OD1) Hbond_SASA: 1.87695 Possible SASA: 202.711 SASA ratio: 0.00925926 Initial HBond E: -1.14568 Adjusted: -1.12446
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: ASP171 Acc Atm:  atomno= 8 rsd= 171  ( OD2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.20162 Adjusted: -1.20162
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLY175 Donor Atm:  atomno= 1 rsd= 175  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.000551833 Adjusted: -0.000551833
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: SER177 Donor Atm:  atomno= 1 rsd= 177  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.609042 Adjusted: -0.609042
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: SER192 Acc Atm:  atomno= 4 rsd= 192  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.542888 Adjusted: -0.542888
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: GLY196 Acc Atm:  atomno= 4 rsd= 196  ( O  ) Hbond_SASA: 3.12825 Possible SASA: 202.711 SASA ratio: 0.0154321 Initial HBond E: -0.636686 Adjusted: -0.617035
devel.AnchoredDesign.InterfaceAnalyzerMover: Computing delta unsat polar residues...
devel.AnchoredDesign.AnchoredDesignMover: One perturb/refine took 75.64 seconds
devel.AnchoredDesign.AnchoredDesignMover: CA_sup_RMSD for this trajectory: 2.2637
devel.AnchoredDesign.AnchoredDesignMover: loop_CA_sup_RMSD for this trajectory: 1.41133
devel.AnchoredDesign.AnchoredDesignMover: chain 1 sup_RMSD for this trajectory: 0
devel.AnchoredDesign.AnchoredDesignMover: chain 2 sup_RMSD for this trajectory: 0.925429
devel.AnchoredDesign.AnchoredDesignMover: chain 1 RMSD for this trajectory: 0
devel.AnchoredDesign.AnchoredDesignMover: chain 2 RMSD for this trajectory: 5.72737
devel.AnchoredDesign.AnchoredDesignMover: interface for rmsd 18 20 21 22 23 24 25 26 37 38 39 40 41 42 43 78 79 80 81 84 121 122 123 128 129 131 152 155 171 172 173 174 175 176 177 178 179 191 192 193 194 195 196 197 202 204 205 206 238 239 240 241 242 243 244 245 246 261 262 263 264 265 266
devel.AnchoredDesign.AnchoredDesignMover: interface backbone RMSD for this trajectory: 1.4893
protocols.jd2.JobDistributor: 1zr0.CD_0004 reported success in 76 seconds
protocols.jd2.JobDistributor: no more batches to process... 
protocols.jd2.JobDistributor: 4 jobs considered, 3 jobs attempted in 284 seconds
apps.pilot.smlewis.AnchoredDesign: Whole run took 316 seconds
apps.pilot.smlewis.AnchoredDesign: ************************d**o**n**e**************************************
