
# User Specified Options:

-options:user 

-AnchoredDesign 
-AnchoredDesign:anchor anchor
-AnchoredDesign:allow_anchor_repack false
-AnchoredDesign:vary_cutpoints 
-AnchoredDesign:no_frags false
-AnchoredDesign:debug false
-AnchoredDesign:show_extended false
-AnchoredDesign:refine_only false
-AnchoredDesign:perturb_show false
-AnchoredDesign:perturb_cycles 50
-AnchoredDesign:perturb_temp 0.8
-AnchoredDesign:perturb_CCD_off false
-AnchoredDesign:perturb_KIC_off false
-AnchoredDesign:refine_CCD_off false
-AnchoredDesign:refine_KIC_off false
-AnchoredDesign:refine_cycles 100
-AnchoredDesign:refine_temp 0.8
-AnchoredDesign:refine_repack_cycles 50
-AnchoredDesign:rmsd false
-AnchoredDesign:unbound_mode false
-AnchoredDesign:chainbreak_weight 2
-AnchoredDesign:testing:VDW_weight 2

-loops:loop_file  loopsfile_native
-loops:vicinity_sampling 

-packing:ex1 
-packing:ex2 
-packing:extrachi_cutoff 8
-packing:resfile  resfile
-packing:use_input_sc 
-packing:linmem_ig 42

-in:path:database  /scratch/smlewis/minirosetta_database/
-in:file:s  1zr0.CD.pdb

-out:nstruct 4
-out:unmute  protocols.loops.CcdLoopClosureMover

-run:version 
-run:min_type dfpmin_armijo
-run:nblist_autoupdate 

core.init: Mini-Rosetta version 39771:39786M from https://svn.rosettacommons.org/source/trunk/mini
core.init: command: /scratch/smlewis/pure2/bin/AnchoredDesign.linuxgccrelease @options_design -database /scratch/smlewis/minirosetta_database
core.init: 'RNG device' seed mode, using '/dev/urandom', seed=-527670476 seed_offset=0 real_seed=-527670476
core.init.random: RandomGenerator:init: Normal mode, seed=-527670476 RG_type=mt19937
core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set.  Created 7533 residue types
core.conformation.Conformation: Found disulfide between residues 7 137
core.conformation.Conformation: current variant for 7 CYS
core.conformation.Conformation: current variant for 137 CYS
core.conformation.Conformation: current variant for 7 CYD
core.conformation.Conformation: current variant for 137 CYD
core.conformation.Conformation: Found disulfide between residues 25 41
core.conformation.Conformation: current variant for 25 CYS
core.conformation.Conformation: current variant for 41 CYS
core.conformation.Conformation: current variant for 25 CYD
core.conformation.Conformation: current variant for 41 CYD
core.conformation.Conformation: Found disulfide between residues 109 210
core.conformation.Conformation: current variant for 109 CYS
core.conformation.Conformation: current variant for 210 CYS
core.conformation.Conformation: current variant for 109 CYD
core.conformation.Conformation: current variant for 210 CYD
core.conformation.Conformation: Found disulfide between residues 116 183
core.conformation.Conformation: current variant for 116 CYS
core.conformation.Conformation: current variant for 183 CYS
core.conformation.Conformation: current variant for 116 CYD
core.conformation.Conformation: current variant for 183 CYD
core.conformation.Conformation: Found disulfide between residues 148 162
core.conformation.Conformation: current variant for 148 CYS
core.conformation.Conformation: current variant for 162 CYS
core.conformation.Conformation: current variant for 148 CYD
core.conformation.Conformation: current variant for 162 CYD
core.conformation.Conformation: Found disulfide between residues 232 282
core.conformation.Conformation: current variant for 232 CYS
core.conformation.Conformation: current variant for 282 CYS
core.conformation.Conformation: current variant for 232 CYD
core.conformation.Conformation: current variant for 282 CYD
core.conformation.Conformation: Found disulfide between residues 241 265
core.conformation.Conformation: current variant for 241 CYS
core.conformation.Conformation: current variant for 265 CYS
core.conformation.Conformation: current variant for 241 CYD
core.conformation.Conformation: current variant for 265 CYD
core.conformation.Conformation: Found disulfide between residues 257 278
core.conformation.Conformation: current variant for 257 CYS
core.conformation.Conformation: current variant for 278 CYS
core.conformation.Conformation: current variant for 257 CYD
core.conformation.Conformation: current variant for 278 CYD
core.pack.task: Packer task: initialize from command line() 
loops: LOOP formats were recently reconciled - with *some* backwards compatibility. Please check your definition files!
loops: Please check that this is what you intended to read in: 
loops: LOOP  begin  end  cut  skip_rate  extended
loops: LOOP 237 244 1 0 0
apps.pilot.smlewis.AnchoredDesign: initial loops LOOP  begin  end  cut  skip_rate  extended
apps.pilot.smlewis.AnchoredDesign: LOOP 237 244 1 0 0
apps.pilot.smlewis.AnchoredDesign: Read in files
devel.AnchoredDesign.AnchorClasses: anchor start/end 242/242 fits within loop start/end 237/244
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/env_log.txt
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/cbeta_den.txt
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/pair_log.txt
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/cenpack_log.txt
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/Rama_smooth_dyn.dat_ss_6.4
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/scoring/score_functions/hbonds/standard_params/HBPoly1D.csv
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/scoring/score_functions/hbonds/standard_params/HBFadeIntervals.csv
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/scoring/score_functions/hbonds/standard_params/HBEval.csv
devel.AnchoredDesign.AnchorClasses: Using default centroid scorefunction
ScoreFunction::show():
weights: (vdw 2) (cenpack 1) (hbond_sr_bb 1) (hbond_lr_bb 1) (pair 1) (rama 1) (env 1) (cbeta 1) (chainbreak 2)
energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
EnergyMethodOptions::show: unfolded_energies_type: 
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: exclude_DNA_DNA: true
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: exclude_DNA_DNA: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: use_hb_env_dep: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: use_hb_env_dep_DNA: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: smooth_hb_env_dep: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: params_database_tag_: standard_params
devel.AnchoredDesign.AnchorClasses: 
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/pdb_pair_stats_fine
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/P_AA
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/P_AA_n
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/P_AA_pp
devel.AnchoredDesign.AnchorClasses: Using default fullatom scorefunction (STANDARD_WTS, SCORE12_PATCH plus chainbreak @ a lot)
ScoreFunction::show():
weights: (fa_atr 0.8) (fa_rep 0.44) (fa_sol 0.65) (fa_intra_rep 0.004) (pro_close 1) (fa_pair 0.49) (hbond_sr_bb 0.585) (hbond_lr_bb 1.17) (hbond_bb_sc 1.17) (hbond_sc 1.1) (dslf_ss_dst 0.5) (dslf_cs_ang 2) (dslf_ss_dih 5) (dslf_ca_dih 5) (rama 0.2) (omega 0.5) (fa_dun 0.56) (p_aa_pp 0.32) (ref 1) (chainbreak 2)
energy_method_options: EnergyMethodOptions::show: etable_type: FA_STANDARD_DEFAULT
EnergyMethodOptions::show: method_weights: ref 0.16 1.7 -0.67 -0.81 0.63 -0.17 0.56 0.24 -0.65 -0.1 -0.34 -0.89 0.02 -0.97 -0.98 -0.37 -0.27 0.29 0.91 0.51
EnergyMethodOptions::show: unfolded_energies_type: 
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: atom_vdw_atom_type_set_name: centroid
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: exclude_protein_protein_hack_elec: false
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: exclude_DNA_DNA: true
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: cst_max_seq_sep: 18446744073709551615
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: bond_angle_central_atoms_to_score:
devel.AnchoredDesign.AnchorClasses: EnergyMethodOptions::show: bond_angle_residue_type_param_set: none
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: exclude_DNA_DNA: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: use_hb_env_dep: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: use_hb_env_dep_DNA: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: smooth_hb_env_dep: true
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: decompose_bb_hb_into_pair_energies: false
devel.AnchoredDesign.AnchorClasses: HBondOptions::show: params_database_tag_: standard_params
devel.AnchoredDesign.AnchorClasses: 
devel.AnchoredDesign.AnchorClasses: autogenerated TaskFactory will prevent repacking for anchor
devel.AnchoredDesign.AnchorClasses: Using default TaskFactory.  Inits from command line and second resfile, then restricts to the loop/interface area
devel.AnchoredDesign.AnchorClasses: Not using separate late TaskFactory.
core.pack.task: Packer task: initialize from command line() 
apps.pilot.smlewis.AnchoredDesign: creating sequence-generic loop fragments (LLLLL...)
core.fragment.picking_old.vall.vall_io: Reading Vall library from /scratch/smlewis/minirosetta_database/filtered.vall.dat.2006-05-05 ... 
core.fragment.picking_old.vall.vall_io:    100000
core.fragment.picking_old.vall.vall_io:    200000
core.fragment.picking_old.vall.vall_io:    300000
core.fragment.picking_old.vall.vall_io:    400000
core.fragment.picking_old.vall.vall_io:    500000
core.fragment.picking_old.vall.vall_io:    600000
core.fragment.picking_old.vall.vall_io:    700000
core.fragment.picking_old.vall.vall_io:    800000
core.fragment.picking_old.vall.vall_io:    900000
core.fragment.picking_old.vall.vall_io:    1000000
core.fragment.picking_old.vall.vall_io:    1100000
core.fragment.picking_old.vall.vall_io:    1200000
core.fragment.picking_old.vall.vall_io:    1300000
core.fragment.picking_old.vall.vall_io:    1400000
core.fragment.picking_old.vall.vall_io: ... done.  Read 1400124 lines.  Time elapsed: 24 seconds.
core.fragment.picking_old.vall.vall_io: Prior library contained 0 sections totaling 0 residues.
core.fragment.picking_old.vall.vall_io: Added 62471 sections to library totaling 1400124 residues.
core.fragment.picking_old.vall.eval.IdentityEval: ss = LLL  |  aa = ...
core.fragment.picking_old.vall.VallLibrarian: best fragment:   score = 0
core.fragment.picking_old.vall.VallLibrarian: worst fragment:  score = 0
devel.AnchoredDesign.AnchorClasses: adding frame, start at 237 go for 3 to 240
devel.AnchoredDesign.AnchorClasses: adding frame, start at 238 go for 3 to 241
devel.AnchoredDesign.AnchorClasses: adding frame, start at 239 go for 3 to 242
devel.AnchoredDesign.AnchorClasses: recovering memory?
protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter
protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs
protocols.jd2.PDBJobInputter: pushing 1zr0.CD.pdb nstruct index 1
protocols.jd2.PDBJobInputter: pushing 1zr0.CD.pdb nstruct index 2
protocols.jd2.PDBJobInputter: pushing 1zr0.CD.pdb nstruct index 3
protocols.jd2.PDBJobInputter: pushing 1zr0.CD.pdb nstruct index 4
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
core.conformation.Conformation: Found disulfide between residues 7 137
core.conformation.Conformation: current variant for 7 CYS
core.conformation.Conformation: current variant for 137 CYS
core.conformation.Conformation: current variant for 7 CYD
core.conformation.Conformation: current variant for 137 CYD
core.conformation.Conformation: Found disulfide between residues 25 41
core.conformation.Conformation: current variant for 25 CYS
core.conformation.Conformation: current variant for 41 CYS
core.conformation.Conformation: current variant for 25 CYD
core.conformation.Conformation: current variant for 41 CYD
core.conformation.Conformation: Found disulfide between residues 109 210
core.conformation.Conformation: current variant for 109 CYS
core.conformation.Conformation: current variant for 210 CYS
core.conformation.Conformation: current variant for 109 CYD
core.conformation.Conformation: current variant for 210 CYD
core.conformation.Conformation: Found disulfide between residues 116 183
core.conformation.Conformation: current variant for 116 CYS
core.conformation.Conformation: current variant for 183 CYS
core.conformation.Conformation: current variant for 116 CYD
core.conformation.Conformation: current variant for 183 CYD
core.conformation.Conformation: Found disulfide between residues 148 162
core.conformation.Conformation: current variant for 148 CYS
core.conformation.Conformation: current variant for 162 CYS
core.conformation.Conformation: current variant for 148 CYD
core.conformation.Conformation: current variant for 162 CYD
core.conformation.Conformation: Found disulfide between residues 232 282
core.conformation.Conformation: current variant for 232 CYS
core.conformation.Conformation: current variant for 282 CYS
core.conformation.Conformation: current variant for 232 CYD
core.conformation.Conformation: current variant for 282 CYD
core.conformation.Conformation: Found disulfide between residues 241 265
core.conformation.Conformation: current variant for 241 CYS
core.conformation.Conformation: current variant for 265 CYS
core.conformation.Conformation: current variant for 241 CYD
core.conformation.Conformation: current variant for 265 CYD
core.conformation.Conformation: Found disulfide between residues 257 278
core.conformation.Conformation: current variant for 257 CYS
core.conformation.Conformation: current variant for 278 CYS
core.conformation.Conformation: current variant for 257 CYD
core.conformation.Conformation: current variant for 278 CYD
core.pack.task: Packer task: initialize from command line() 
protocols.jd2.PDBJobInputter: filling pose from PDB 1zr0.CD.pdb
devel.AnchoredDesign.AnchorClasses: checking/(re)setting loop cutpoints; loops become:
devel.AnchoredDesign.AnchorClasses: LOOP 237 244 240 0 0
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  EDGE 223 242 1  EDGE 242 241 -1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 240 -1 
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  JEDGE 223 242 1 C N  INTRA_RES_STUB  EDGE 242 241 -1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 240 -1 
devel.AnchoredDesign.Anchor_Movers: pose says 'is_cutpoint(#)': 223 240 286 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_LOWER': 240 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_UPPER': 241 
devel.AnchoredDesign.AnchoredPerturbMover: entering perturb steps
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/scoring/score_functions/disulfides/fa_SS_distance_score
core.pack.dunbrack: Dunbrack library took 0.05 seconds to load from binary
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of starting PDB: 687.052
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1313.939   -1051.151
 fa_rep                       0.440    1403.962     617.743
 fa_sol                       0.650     839.100     545.415
 fa_intra_rep                 0.004     795.266       3.181
 pro_close                    1.000      53.551      53.551
 fa_pair                      0.490     -36.482     -17.876
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -79.948     -93.539
 hbond_bb_sc                  1.170     -18.725     -21.908
 hbond_sc                     1.100      -7.330      -8.063
 dslf_ss_dst                  0.500      15.297       7.649
 dslf_cs_ang                  2.000      12.936      25.873
 dslf_ss_dih                  5.000       5.655      28.274
 dslf_ca_dih                  5.000       0.217       1.086
 rama                         0.200      69.423      13.885
 omega                        0.500     207.791     103.896
 fa_dun                       0.560     984.272     551.192
 p_aa_pp                      0.320     -80.087     -25.628
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.035       0.070
---------------------------------------------------
 Total weighted score:                      687.052
core.chemical.ResidueTypeSet: Finished initializing centroid residue type set.  Created 1202 residue types
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of starting PDB: -51.7498
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.263       0.526
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -79.006     -79.006
 rama                         1.000      69.423      69.423
 chainbreak                   2.000       0.035       0.070
---------------------------------------------------
 Total weighted score:                      -51.750
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating fragment-based perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover:    Current     Low    total cycles =50
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 1  -51.7693  -51.7693
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
devel.AnchoredDesign.AnchoredPerturbMover: 2  -51.7901  -51.7901
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 3  -52.9364  -52.9364
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 4  -52.9364  -52.9364
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 5  -55.2075  -55.2075
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 6  -55.2051  -55.2075
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 7  -55.2051  -55.2075
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 8  -55.2051  -55.2075
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 9  -55.2051  -55.2075
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 10  -55.0955  -55.2075
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 11  -55.0955  -55.2075
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 12  -55.0955  -55.2075
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 13  -54.2594  -55.2075
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 14  -54.2594  -55.2075
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 15  -54.0062  -55.2075
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 238/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 16  -54.6523  -55.2075
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 17  -54.6523  -55.2075
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.0745667 Finite Diff= 0.080688
devel.AnchoredDesign.AnchoredPerturbMover: 18  -54.6529  -55.2075
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 19  -54.6529  -55.2075
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 20  -56.5507  -56.5507
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 21  -56.7126  -56.7126
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 22  -56.7126  -56.7126
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 23  -56.7781  -56.7781
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 24  -57.141  -57.141
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.0697609 Finite Diff= 0.244374
devel.AnchoredDesign.AnchoredPerturbMover: 25  -56.9823  -57.141
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 26  -56.9823  -57.141
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 27  -56.9823  -57.141
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 28  -56.9823  -57.141
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 29  -56.9823  -57.141
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 30  -56.9823  -57.141
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 31  -56.9823  -57.141
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 32  -56.9823  -57.141
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.0663671 Finite Diff= 0.170035
devel.AnchoredDesign.AnchoredPerturbMover: 33  -56.7889  -57.141
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 34  -56.3571  -57.141
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 35  -57.7353  -57.7353
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 36  -57.7353  -57.7353
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 37  -57.5362  -57.7353
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 38  -57.5362  -57.7353
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 39  -57.4243  -57.7353
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 40  -57.4243  -57.7353
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 41  -57.4679  -57.7353
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
devel.AnchoredDesign.AnchoredPerturbMover: 42  -57.4679  -57.7353
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 43  -57.4679  -57.7353
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 44  -57.4679  -57.7353
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 45  -57.4679  -57.7353
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 46  -57.4679  -57.7353
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 47  -57.4679  -57.7353
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 48  -57.4679  -57.7353
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 49  -57.4679  -57.7353
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 50  -57.4679  -57.7353
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of final perturbed PDB: -57.7353
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.263       0.526
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -80.170     -80.170
 rama                         1.000      64.427      64.427
 chainbreak                   2.000       0.123       0.245
---------------------------------------------------
 Total weighted score:                      -57.735
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 2282 rotamers at 69 positions.
core.pack.pack_rotamers: IG: 1306176 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 63 score/deriv cals, 9 narrow-from-wide updates, 10 full updates.
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of perturbed, refullatomized, repacked/minimized PDB: 464.431
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1315.570   -1052.456
 fa_rep                       0.440     956.582     420.896
 fa_sol                       0.650     838.108     544.770
 fa_intra_rep                 0.004    1493.786       5.975
 pro_close                    1.000      51.648      51.648
 fa_pair                      0.490     -36.667     -17.967
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -80.310     -93.962
 hbond_bb_sc                  1.170     -24.064     -28.154
 hbond_sc                     1.100      -9.315     -10.247
 dslf_ss_dst                  0.500      13.438       6.719
 dslf_cs_ang                  2.000      13.184      26.369
 dslf_ss_dih                  5.000       5.737      28.683
 dslf_ca_dih                  5.000       0.220       1.101
 rama                         0.200      65.487      13.097
 omega                        0.500     208.286     104.143
 fa_dun                       0.560     956.090     535.411
 p_aa_pp                      0.320     -82.718     -26.470
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.736       1.473
---------------------------------------------------
 Total weighted score:                      464.431
devel.AnchoredDesign.AnchoredPerturbMover: One perturb took 23.64 seconds
devel.AnchoredDesign.AnchoredPerturbMover: perturb steps complete
devel.AnchoredDesign.AnchoredRefineMover: entering refine steps
devel.AnchoredDesign.AnchoredRefineMover: fullatom score upon entering refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1315.570   -1052.456
 fa_rep                       0.440     956.582     420.896
 fa_sol                       0.650     838.108     544.770
 fa_intra_rep                 0.004    1493.786       5.975
 pro_close                    1.000      51.648      51.648
 fa_pair                      0.490     -36.667     -17.967
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -80.310     -93.962
 hbond_bb_sc                  1.170     -24.064     -28.154
 hbond_sc                     1.100      -9.315     -10.247
 dslf_ss_dst                  0.500      13.438       6.719
 dslf_cs_ang                  2.000      13.184      26.369
 dslf_ss_dih                  5.000       5.737      28.683
 dslf_ca_dih                  5.000       0.220       1.101
 rama                         0.200      65.487      13.097
 omega                        0.500     208.286     104.143
 fa_dun                       0.560     956.090     535.411
 p_aa_pp                      0.320     -82.718     -26.470
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.736       1.473
---------------------------------------------------
 Total weighted score:                      464.431
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating Small & ShearMover for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: using no-sidechains MoveMap for minimization in normal refine cycles
devel.AnchoredDesign.AnchoredRefineMover:    Current     Low    total cycles =100, second resfile at 67
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 1  461.996  461.996
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 2  461.974  461.974
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 3  462.011  461.974
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 4  461.751  461.751
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 5  461.709  461.709
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 1 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 6  460.5  460.5
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 7  460.581  460.5
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 44 score/deriv cals, 15 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 8  459.458  459.458
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 9  458.352  458.352
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 28 score/deriv cals, 8 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 10  458.352  458.352
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 11  458.32  458.32
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 5 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 12  457.971  457.971
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 13  457.904  457.904
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 26 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 14  457.808  457.808
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 1 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 15  457.683  457.683
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 16  457.232  457.232
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 17  457.232  457.232
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 0 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 18  457.009  457.009
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 19  457.009  457.009
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 28 score/deriv cals, 5 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 20  456.897  456.897
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 41 score/deriv cals, 8 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 21  456.897  456.897
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 27 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 22  456.897  456.897
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 0 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 23  457.678  456.897
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 24  457.678  456.897
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 0 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 25  456.834  456.834
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 28 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 26  456.834  456.834
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 27  456.834  456.834
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 5 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 28  456.834  456.834
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 6 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 29  457.245  456.834
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 30  457.245  456.834
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 31  457.422  456.834
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 32  457.422  456.834
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 33  457.422  456.834
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 0 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 34  457.076  456.834
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 35  456.981  456.834
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 6 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 36  457.15  456.834
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 5 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 37  456.834  456.834
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 38  456.926  456.834
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 39  457.237  456.834
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 40  457.237  456.834
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 41  456.891  456.834
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 42  456.574  456.574
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 7 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 43  456.302  456.302
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 44  456.272  456.272
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 1 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 45  456.388  456.272
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 46  456.388  456.272
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 1 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 47  456.025  456.025
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 48  456.025  456.025
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 49  456.025  456.025
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 6503 rotamers at 72 positions.
core.pack.pack_rotamers: IG: 2937708 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 50  429.856  429.856
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 51  429.82  429.82
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 52  429.82  429.82
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 53  429.987  429.82
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 54  430.249  429.82
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 55  430.765  429.82
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 56  430.38  429.82
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 57  430.38  429.82
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 58  430.38  429.82
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 59  430.38  429.82
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 60  430.534  429.82
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 61  430.353  429.82
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 62  429.988  429.82
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 63  430.411  429.82
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 64  430.601  429.82
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 65  429.758  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 66  429.828  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 67  429.828  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 68  429.828  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 69  430.212  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 70  430.239  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 71  430.254  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 72  430.671  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 73  431.744  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 74  431.452  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 75  430.66  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 76  430.66  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 77  430.788  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 78  430.788  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 6 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 79  431.247  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 80  432.65  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 81  432.069  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 82  431.455  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 83  431.455  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 84  431.763  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 85  431.763  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 86  431.125  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 32 score/deriv cals, 6 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 87  431.3  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 7 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 88  432.121  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 26 score/deriv cals, 3 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 89  432.1  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 33 score/deriv cals, 12 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 90  432.1  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 41 score/deriv cals, 0 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 91  432.1  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 92  431.807  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 93  431.386  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 44 score/deriv cals, 6 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 94  431.386  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 33 score/deriv cals, 5 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 95  431.386  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 96  431.701  429.758
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 28 score/deriv cals, 7 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 97  431.701  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 4 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 98  431.631  429.758
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 99  431.626  429.758
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 6480 rotamers at 72 positions.
core.pack.pack_rotamers: IG: 2931880 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 100  431.772  429.758
devel.AnchoredDesign.AnchoredRefineMover: fullatom score exiting refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1311.625   -1049.300
 fa_rep                       0.440     922.767     406.017
 fa_sol                       0.650     839.199     545.479
 fa_intra_rep                 0.004     761.122       3.044
 pro_close                    1.000      51.018      51.018
 fa_pair                      0.490     -39.046     -19.133
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -79.781     -93.344
 hbond_bb_sc                  1.170     -25.193     -29.475
 hbond_sc                     1.100     -11.069     -12.176
 dslf_ss_dst                  0.500      14.255       7.127
 dslf_cs_ang                  2.000      12.767      25.533
 dslf_ss_dih                  5.000       5.770      28.852
 dslf_ca_dih                  5.000       0.231       1.156
 rama                         0.200      65.509      13.102
 omega                        0.500     206.956     103.478
 fa_dun                       0.560     930.627     521.151
 p_aa_pp                      0.320     -82.529     -26.409
 ref                          1.000     -21.990     -21.990
 chainbreak                   2.000       0.313       0.626
---------------------------------------------------
 Total weighted score:                      429.741
One refine took 145.59 seconds
devel.AnchoredDesign.AnchoredRefineMover: refine steps complete
devel.AnchoredDesign.LoopAnalyzerMover: running LoopAnalyzerMover
devel.AnchoredDesign.InterfaceAnalyzerMover: Making an interface set with default calculator.
core.pack.task: Packer task: initialize from command line() 
devel.AnchoredDesign.InterfaceAnalyzerMover: NULL scorefunction.  Initialize from cmd line.
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
protocols.moves.RigidBodyMover: Translate: Jump (before): RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -7.98893 -14.9744 -21.5521  
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -186.658 -996.027 53.3716  
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 59 rotamers at 59 positions.
core.pack.pack_rotamers: IG: 171420 bytes
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 59 rotamers at 59 positions.
core.pack.pack_rotamers: IG: 154380 bytes
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/phi.theta.36.HS.resmooth
basic.io.database: Database file opened: /scratch/smlewis/minirosetta_database/phi.theta.36.SS.resmooth
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of complex: -16.0595
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of separated: -4.96631
devel.AnchoredDesign.InterfaceAnalyzerMover: radii: [ 1.89, 1.89, 2.1285, 2.0115, 1.9485, 1.665, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.701, 1.44, 2.1285, 1.89, 1.44, 2.0425, 0.54, 1.08, 1.08, 0.54, 1.44, 1.71, 2.07, 2.22, 2.36, 1.09, 0.78, 0.65, 1.185, 1.2986, 1.3638, 1.7638, 0, 0, 0, ]
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: LEU246 Donor Atm:  atomno= 1 rsd= 246  ( N  ) Acc Res: TYR22 Acc Atm:  atomno= 12 rsd= 22  ( OH ) Hbond_SASA: 3.7539 Possible SASA: 202.711 SASA ratio: 0.0185185 Initial HBond E: -0.769039 Adjusted: -0.740556
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ALA244 Donor Atm:  atomno= 1 rsd= 244  ( N  ) Acc Res: PHE24 Acc Atm:  atomno= 4 rsd= 24  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.936161 Adjusted: -0.936161
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: HIS40 Acc Atm:  atomno= 10 rsd= 40  ( NE2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.0642834 Adjusted: -0.0642834
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: TYR238 Donor Atm:  atomno= 12 rsd= 238  ( OH ) Acc Res: THR129 Acc Atm:  atomno= 6 rsd= 129  ( OG1) Hbond_SASA: 13.7643 Possible SASA: 202.711 SASA ratio: 0.0679012 Initial HBond E: -0.992181 Adjusted: -0.85744
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: LYS240 Donor Atm:  atomno= 11 rsd= 240  ( NZ ) Acc Res: GLN155 Acc Atm:  atomno= 8 rsd= 155  ( OE1) Hbond_SASA: 22.5234 Possible SASA: 202.711 SASA ratio: 0.111111 Initial HBond E: -0.836583 Adjusted: -0.650676
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 10 rsd= 242  ( NH1) Acc Res: ASP171 Acc Atm:  atomno= 7 rsd= 171  ( OD1) Hbond_SASA: 1.87695 Possible SASA: 202.711 SASA ratio: 0.00925926 Initial HBond E: -1.15249 Adjusted: -1.13114
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: ASP171 Acc Atm:  atomno= 8 rsd= 171  ( OD2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.19693 Adjusted: -1.19693
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLN174 Donor Atm:  atomno= 9 rsd= 174  ( NE2) Acc Res: CYS241 Acc Atm:  atomno= 4 rsd= 241  ( O  ) Hbond_SASA: 3.7539 Possible SASA: 202.711 SASA ratio: 0.0185185 Initial HBond E: -1.11806 Adjusted: -1.07665
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLY175 Donor Atm:  atomno= 1 rsd= 175  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.00988188 Adjusted: -0.00988188
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: SER177 Donor Atm:  atomno= 1 rsd= 177  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.962632 Adjusted: -0.962632
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: SER192 Acc Atm:  atomno= 4 rsd= 192  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.215424 Adjusted: -0.215424
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLY194 Donor Atm:  atomno= 1 rsd= 194  ( N  ) Acc Res: LYS240 Acc Atm:  atomno= 4 rsd= 240  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.763455 Adjusted: -0.763455
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: GLY196 Acc Atm:  atomno= 4 rsd= 196  ( O  ) Hbond_SASA: 2.5026 Possible SASA: 202.711 SASA ratio: 0.0123457 Initial HBond E: -0.636686 Adjusted: -0.620965
devel.AnchoredDesign.InterfaceAnalyzerMover: Computing delta unsat polar residues...
devel.AnchoredDesign.AnchoredDesignMover: One perturb/refine took 171.92 seconds
protocols.jd2.JobDistributor: 1zr0.CD_0001 reported success in 173 seconds
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
protocols.jd2.PDBJobInputter: filling pose from saved copy 1zr0.CD.pdb
devel.AnchoredDesign.AnchorClasses: checking/(re)setting loop cutpoints; loops become:
devel.AnchoredDesign.AnchorClasses: LOOP 237 244 241 0 0
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  EDGE 223 242 1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 241 -1 
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  JEDGE 223 242 1 C N  INTRA_RES_STUB  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 241 -1 
devel.AnchoredDesign.Anchor_Movers: pose says 'is_cutpoint(#)': 223 241 286 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_LOWER': 241 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_UPPER': 242 
devel.AnchoredDesign.AnchoredPerturbMover: entering perturb steps
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of starting PDB: 689.406
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1313.939   -1051.151
 fa_rep                       0.440    1403.962     617.743
 fa_sol                       0.650     839.100     545.415
 fa_intra_rep                 0.004     795.266       3.181
 pro_close                    1.000      53.551      53.551
 fa_pair                      0.490     -36.482     -17.876
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -79.948     -93.539
 hbond_bb_sc                  1.170     -18.725     -21.908
 hbond_sc                     1.100      -7.330      -8.063
 dslf_ss_dst                  0.500      25.409      12.704
 dslf_cs_ang                  2.000      10.449      20.898
 dslf_ss_dih                  5.000       6.389      31.947
 dslf_ca_dih                  5.000       0.202       1.012
 rama                         0.200      69.577      13.915
 omega                        0.500     204.379     102.190
 fa_dun                       0.560     984.329     551.224
 p_aa_pp                      0.320     -80.201     -25.664
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.212       0.423
---------------------------------------------------
 Total weighted score:                      689.406
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of starting PDB: -51.2428
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.263       0.526
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -79.006     -79.006
 rama                         1.000      69.577      69.577
 chainbreak                   2.000       0.212       0.423
---------------------------------------------------
 Total weighted score:                      -51.243
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating fragment-based perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover:    Current     Low    total cycles =50
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 1  -51.2428  -51.2428
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 2  -51.2428  -51.2428
protocols.loops.KinematicWrapper: KinematicMover closed in 3 cycles; loop was begin/middle/end 238/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 3  -52.5044  -52.5044
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 4  -52.5044  -52.5044
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 5  -52.5044  -52.5044
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 6  -52.5044  -52.5044
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 7  -52.5044  -52.5044
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 8  -52.5044  -52.5044
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 9  -52.5044  -52.5044
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 10  -52.5044  -52.5044
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 11  -52.5044  -52.5044
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 12  -52.5044  -52.5044
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 237/238/239
devel.AnchoredDesign.AnchoredPerturbMover: 13  -51.6964  -52.5044
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 14  -53.1951  -53.1951
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 15  -53.1951  -53.1951
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.742081 Finite Diff= 1.41594
devel.AnchoredDesign.AnchoredPerturbMover: 16  -53.1951  -53.1951
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 17  -53.1951  -53.1951
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 18  -53.2648  -53.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 19  -52.32  -53.2648
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 20  -52.32  -53.2648
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 21  -52.32  -53.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
devel.AnchoredDesign.AnchoredPerturbMover: 22  -52.32  -53.2648
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 23  -52.32  -53.2648
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 24  -52.32  -53.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 25  -52.4352  -53.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 26  -52.4352  -53.2648
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 27  -52.4352  -53.2648
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 28  -54.054  -54.054
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 29  -54.054  -54.054
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 30  -54.054  -54.054
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 31  -54.054  -54.054
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
devel.AnchoredDesign.AnchoredPerturbMover: 32  -54.1955  -54.1955
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 33  -54.1955  -54.1955
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
devel.AnchoredDesign.AnchoredPerturbMover: 34  -54.1955  -54.1955
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 35  -54.2231  -54.2231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 36  -54.2231  -54.2231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 37  -54.2231  -54.2231
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 38  -54.2231  -54.2231
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 39  -56.935  -56.935
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 40  -56.935  -56.935
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 41  -56.9427  -56.9427
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 42  -56.9427  -56.9427
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 43  -56.9427  -56.9427
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 44  -56.9427  -56.9427
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 45  -56.7108  -56.9427
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.208166 Finite Diff= 0.0216666
devel.AnchoredDesign.AnchoredPerturbMover: 46  -56.7108  -56.9427
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 47  -56.7108  -56.9427
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 48  -56.7109  -56.9427
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
devel.AnchoredDesign.AnchoredPerturbMover: 49  -56.4117  -56.9427
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 50  -56.4014  -56.9427
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of final perturbed PDB: -56.9427
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.263       0.526
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -80.345     -80.345
 rama                         1.000      65.518      65.518
 chainbreak                   2.000       0.061       0.121
---------------------------------------------------
 Total weighted score:                      -56.943
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 2169 rotamers at 69 positions.
core.pack.pack_rotamers: IG: 1310416 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 39 score/deriv cals, 5 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of perturbed, refullatomized, repacked/minimized PDB: 463.46
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1305.450   -1044.360
 fa_rep                       0.440     942.379     414.647
 fa_sol                       0.650     832.657     541.227
 fa_intra_rep                 0.004     766.137       3.065
 pro_close                    1.000      51.425      51.425
 fa_pair                      0.490     -37.048     -18.154
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -79.717     -93.269
 hbond_bb_sc                  1.170     -23.017     -26.930
 hbond_sc                     1.100     -10.701     -11.771
 dslf_ss_dst                  0.500      27.678      13.839
 dslf_cs_ang                  2.000      10.024      20.048
 dslf_ss_dih                  5.000       6.323      31.614
 dslf_ca_dih                  5.000       0.211       1.056
 rama                         0.200      66.550      13.310
 omega                        0.500     207.324     103.662
 fa_dun                       0.560     958.523     536.773
 p_aa_pp                      0.320     -83.685     -26.779
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.327       0.655
---------------------------------------------------
 Total weighted score:                      463.460
devel.AnchoredDesign.AnchoredPerturbMover: One perturb took 22.49 seconds
devel.AnchoredDesign.AnchoredPerturbMover: perturb steps complete
devel.AnchoredDesign.AnchoredRefineMover: entering refine steps
devel.AnchoredDesign.AnchoredRefineMover: fullatom score upon entering refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1305.450   -1044.360
 fa_rep                       0.440     942.379     414.647
 fa_sol                       0.650     832.657     541.227
 fa_intra_rep                 0.004     766.137       3.065
 pro_close                    1.000      51.425      51.425
 fa_pair                      0.490     -37.048     -18.154
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -79.717     -93.269
 hbond_bb_sc                  1.170     -23.017     -26.930
 hbond_sc                     1.100     -10.701     -11.771
 dslf_ss_dst                  0.500      27.678      13.839
 dslf_cs_ang                  2.000      10.024      20.048
 dslf_ss_dih                  5.000       6.323      31.614
 dslf_ca_dih                  5.000       0.211       1.056
 rama                         0.200      66.550      13.310
 omega                        0.500     207.324     103.662
 fa_dun                       0.560     958.523     536.773
 p_aa_pp                      0.320     -83.685     -26.779
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.327       0.655
---------------------------------------------------
 Total weighted score:                      463.460
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating Small & ShearMover for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: using no-sidechains MoveMap for minimization in normal refine cycles
devel.AnchoredDesign.AnchoredRefineMover:    Current     Low    total cycles =100, second resfile at 67
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 1  463.46  463.46
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 2  463.136  463.136
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 3  462.289  462.289
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 30 score/deriv cals, 8 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 4  462.289  462.289
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 5  462.289  462.289
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 6  462.289  462.289
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 19 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 7  460.085  460.085
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 8  460.085  460.085
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 34 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 9  457.397  457.397
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 10  455.982  455.982
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 11  455.669  455.669
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 12  455.701  455.669
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 5 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 13  455.701  455.669
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 32 score/deriv cals, 6 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 14  455.243  455.243
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 37 score/deriv cals, 8 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 15  455.243  455.243
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 16  454.664  454.664
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 17  454.664  454.664
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 36 score/deriv cals, 6 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 18  454.664  454.664
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 33 score/deriv cals, 7 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 19  454.664  454.664
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 30 score/deriv cals, 6 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 20  454.664  454.664
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 21  454.453  454.453
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 5 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 22  454.453  454.453
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 23  454.453  454.453
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 24  454.411  454.411
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 5 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 25  454.411  454.411
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 26  454.616  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 27  454.616  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 37 score/deriv cals, 8 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 28  454.616  454.411
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 5 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 29  454.616  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 30  454.616  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 31  454.616  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 32  457.114  454.411
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 35 score/deriv cals, 7 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 33  456.501  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 34  456.501  454.411
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 37 score/deriv cals, 6 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 35  456.877  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 36  456.57  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 37  454.499  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 19 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 38  454.499  454.411
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 3 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 39  454.499  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 40  454.499  454.411
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 39 score/deriv cals, 7 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 41  454.739  454.411
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 42  454.122  454.122
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 43  454.122  454.122
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 27 score/deriv cals, 3 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 44  454.122  454.122
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 45  454.122  454.122
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 6 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 46  455.542  454.122
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 47  453.844  453.844
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 48  453.844  453.844
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 49  453.844  453.844
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 6477 rotamers at 72 positions.
core.pack.pack_rotamers: IG: 2913788 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 50  431.32  431.32
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 30 score/deriv cals, 8 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 51  429.976  429.976
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 52  429.043  429.043
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 5 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 53  429.043  429.043
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 2 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 54  429.043  429.043
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 55  428.637  428.637
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 56  428.651  428.637
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 57  428.651  428.637
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 58  428.632  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 35 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 59  428.632  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 60  428.718  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 26 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 61  429.402  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 62  429.402  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 0 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 63  429.402  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 64  429.402  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 65  429.402  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 66  429.402  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 67  429.402  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 39 score/deriv cals, 10 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 68  429.402  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 37 score/deriv cals, 11 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 69  429.402  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 3 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 70  429.402  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 35 score/deriv cals, 10 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 71  429.402  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 31 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 72  429.402  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 73  429.402  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 74  429.402  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 45 score/deriv cals, 10 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 75  429.402  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 36 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 76  431.331  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 77  430.646  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 78  430.624  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 41 score/deriv cals, 10 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 79  430.624  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 80  430.642  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 81  430.822  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 34 score/deriv cals, 4 narrow-from-wide updates, 7 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 82  430.822  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 83  430.587  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 38 score/deriv cals, 4 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 84  430.587  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 85  431.734  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 42 score/deriv cals, 5 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 86  431.919  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 87  431.303  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 50 score/deriv cals, 4 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 88  431.303  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 89  430.727  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 90  430.727  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 40 score/deriv cals, 9 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 91  430.727  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 92  430.806  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 38 score/deriv cals, 8 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 93  431.874  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 31 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 94  431.874  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 95  431.122  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 96  431.122  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 31 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 97  431.122  428.632
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 98  432.018  428.632
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 6 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 99  432.018  428.632
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 6696 rotamers at 72 positions.
core.pack.pack_rotamers: IG: 2956112 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 100  429.595  428.632
devel.AnchoredDesign.AnchoredRefineMover: fullatom score exiting refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1303.349   -1042.679
 fa_rep                       0.440     913.864     402.100
 fa_sol                       0.650     831.398     540.408
 fa_intra_rep                 0.004     754.843       3.019
 pro_close                    1.000      51.325      51.325
 fa_pair                      0.490     -37.677     -18.462
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -80.570     -94.267
 hbond_bb_sc                  1.170     -25.064     -29.325
 hbond_sc                     1.100     -10.115     -11.126
 dslf_ss_dst                  0.500      26.700      13.350
 dslf_cs_ang                  2.000      10.013      20.025
 dslf_ss_dih                  5.000       6.316      31.579
 dslf_ca_dih                  5.000       0.216       1.079
 rama                         0.200      66.891      13.378
 omega                        0.500     208.137     104.069
 fa_dun                       0.560     925.904     518.506
 p_aa_pp                      0.320     -83.949     -26.864
 ref                          1.000     -22.700     -22.700
 chainbreak                   2.000       0.104       0.208
---------------------------------------------------
 Total weighted score:                      428.608
One refine took 149.42 seconds
devel.AnchoredDesign.AnchoredRefineMover: refine steps complete
devel.AnchoredDesign.LoopAnalyzerMover: running LoopAnalyzerMover
devel.AnchoredDesign.InterfaceAnalyzerMover: Making an interface set with default calculator.
core.pack.task: Packer task: initialize from command line() 
protocols.moves.RigidBodyMover: Translate: Jump (before): RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -7.98893 -14.9744 -21.5521  
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -193.204 -980.518 161.263  
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 58 rotamers at 58 positions.
core.pack.pack_rotamers: IG: 169952 bytes
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 58 rotamers at 58 positions.
core.pack.pack_rotamers: IG: 152344 bytes
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of complex: -18.6869
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of separated: -2.66508
devel.AnchoredDesign.InterfaceAnalyzerMover: radii: [ 1.89, 1.89, 2.1285, 2.0115, 1.9485, 1.665, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.701, 1.44, 2.1285, 1.89, 1.44, 2.0425, 0.54, 1.08, 1.08, 0.54, 1.44, 1.71, 2.07, 2.22, 2.36, 1.09, 0.78, 0.65, 1.185, 1.2986, 1.3638, 1.7638, 0, 0, 0, ]
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: LEU246 Donor Atm:  atomno= 1 rsd= 246  ( N  ) Acc Res: TYR22 Acc Atm:  atomno= 12 rsd= 22  ( OH ) Hbond_SASA: 2.5026 Possible SASA: 202.711 SASA ratio: 0.0123457 Initial HBond E: -1.21551 Adjusted: -1.18549
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: MET244 Donor Atm:  atomno= 1 rsd= 244  ( N  ) Acc Res: PHE24 Acc Atm:  atomno= 4 rsd= 24  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.781365 Adjusted: -0.781365
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: HIS40 Acc Atm:  atomno= 10 rsd= 40  ( NE2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.068241 Adjusted: -0.068241
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH1) Acc Res: ASP171 Acc Atm:  atomno= 7 rsd= 171  ( OD1) Hbond_SASA: 1.87695 Possible SASA: 202.711 SASA ratio: 0.00925926 Initial HBond E: -1.15261 Adjusted: -1.13126
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 12 rsd= 242  ( NH2) Acc Res: ASP171 Acc Atm:  atomno= 8 rsd= 171  ( OD2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.20395 Adjusted: -1.20395
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLN174 Donor Atm:  atomno= 9 rsd= 174  ( NE2) Acc Res: SER238 Acc Atm:  atomno= 6 rsd= 238  ( OG ) Hbond_SASA: 20.6465 Possible SASA: 202.711 SASA ratio: 0.101852 Initial HBond E: -0.22356 Adjusted: -0.17802
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLY175 Donor Atm:  atomno= 1 rsd= 175  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.0332541 Adjusted: -0.0332541
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: SER177 Donor Atm:  atomno= 1 rsd= 177  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.711357 Adjusted: -0.711357
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: SER192 Acc Atm:  atomno= 4 rsd= 192  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.162891 Adjusted: -0.162891
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLY194 Donor Atm:  atomno= 1 rsd= 194  ( N  ) Acc Res: PRO240 Acc Atm:  atomno= 4 rsd= 240  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.28693 Adjusted: -1.28693
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 12 rsd= 242  ( NH2) Acc Res: GLY196 Acc Atm:  atomno= 4 rsd= 196  ( O  ) Hbond_SASA: 3.12825 Possible SASA: 202.711 SASA ratio: 0.0154321 Initial HBond E: -0.636686 Adjusted: -0.617035
devel.AnchoredDesign.InterfaceAnalyzerMover: Computing delta unsat polar residues...
devel.AnchoredDesign.AnchoredDesignMover: One perturb/refine took 174.49 seconds
protocols.jd2.JobDistributor: 1zr0.CD_0002 reported success in 174 seconds
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
protocols.jd2.PDBJobInputter: filling pose from saved copy 1zr0.CD.pdb
devel.AnchoredDesign.AnchorClasses: checking/(re)setting loop cutpoints; loops become:
devel.AnchoredDesign.AnchorClasses: LOOP 237 244 240 0 0
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  EDGE 223 242 1  EDGE 242 241 -1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 240 -1 
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  JEDGE 223 242 1 C N  INTRA_RES_STUB  EDGE 242 241 -1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 240 -1 
devel.AnchoredDesign.Anchor_Movers: pose says 'is_cutpoint(#)': 223 240 286 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_LOWER': 240 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_UPPER': 241 
devel.AnchoredDesign.AnchoredPerturbMover: entering perturb steps
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of starting PDB: 687.052
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1313.939   -1051.151
 fa_rep                       0.440    1403.962     617.743
 fa_sol                       0.650     839.100     545.415
 fa_intra_rep                 0.004     795.266       3.181
 pro_close                    1.000      53.551      53.551
 fa_pair                      0.490     -36.482     -17.876
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -79.948     -93.539
 hbond_bb_sc                  1.170     -18.725     -21.908
 hbond_sc                     1.100      -7.330      -8.063
 dslf_ss_dst                  0.500      15.297       7.649
 dslf_cs_ang                  2.000      12.936      25.873
 dslf_ss_dih                  5.000       5.655      28.274
 dslf_ca_dih                  5.000       0.217       1.086
 rama                         0.200      69.423      13.885
 omega                        0.500     207.791     103.896
 fa_dun                       0.560     984.272     551.192
 p_aa_pp                      0.320     -80.087     -25.628
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.035       0.070
---------------------------------------------------
 Total weighted score:                      687.052
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of starting PDB: -51.7498
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.263       0.526
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -79.006     -79.006
 rama                         1.000      69.423      69.423
 chainbreak                   2.000       0.035       0.070
---------------------------------------------------
 Total weighted score:                      -51.750
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating fragment-based perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover:    Current     Low    total cycles =50
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 1  -51.7498  -51.7498
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 2  -51.7498  -51.7498
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 3  -51.7498  -51.7498
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 4  -51.7498  -51.7498
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 5  -51.7498  -51.7498
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 6  -51.7498  -51.7498
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 7  -51.7498  -51.7498
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 8  -51.7498  -51.7498
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 9  -51.7498  -51.7498
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 10  -51.7498  -51.7498
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 11  -52.0074  -52.0074
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 12  -52.008  -52.008
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 13  -52.008  -52.008
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 14  -52.008  -52.008
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
devel.AnchoredDesign.AnchoredPerturbMover: 15  -52.0057  -52.008
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 16  -52.0057  -52.008
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
devel.AnchoredDesign.AnchoredPerturbMover: 17  -52.7136  -52.7136
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 18  -52.7136  -52.7136
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
devel.AnchoredDesign.AnchoredPerturbMover: 19  -52.7136  -52.7136
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 20  -52.7156  -52.7156
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 21  -52.7156  -52.7156
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.352379 Finite Diff= 0.45396
devel.AnchoredDesign.AnchoredPerturbMover: 22  -52.7156  -52.7156
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 23  -52.716  -52.716
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 24  -55.4179  -55.4179
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 25  -55.4179  -55.4179
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 26  -55.4405  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 27  -55.4405  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 28  -55.4405  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 29  -55.4405  -55.4405
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 30  -55.4405  -55.4405
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 237/238/239
devel.AnchoredDesign.AnchoredPerturbMover: 31  -55.3411  -55.4405
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 32  -55.3313  -55.4405
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 33  -55.3313  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 34  -55.3313  -55.4405
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 35  -55.023  -55.4405
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 36  -54.792  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 37  -54.792  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 38  -54.792  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 39  -54.792  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 40  -54.792  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 41  -54.792  -55.4405
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
devel.AnchoredDesign.AnchoredPerturbMover: 42  -54.7298  -55.4405
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
devel.AnchoredDesign.AnchoredPerturbMover: 43  -54.3978  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 44  -54.3978  -55.4405
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
devel.AnchoredDesign.AnchoredPerturbMover: 45  -54.3836  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 46  -54.3836  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 47  -54.3836  -55.4405
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 48  -54.3805  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 49  -54.3805  -55.4405
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 50  -54.3805  -55.4405
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of final perturbed PDB: -55.4405
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.287       0.574
 hbond_sr_bb                  1.000     -42.817     -42.817
 hbond_lr_bb                  1.000     -79.551     -79.551
 rama                         1.000      66.036      66.036
 chainbreak                   2.000       0.159       0.318
---------------------------------------------------
 Total weighted score:                      -55.440
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 2404 rotamers at 72 positions.
core.pack.pack_rotamers: IG: 1405644 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 4 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of perturbed, refullatomized, repacked/minimized PDB: 455.031
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1306.587   -1045.270
 fa_rep                       0.440     945.577     416.054
 fa_sol                       0.650     832.565     541.167
 fa_intra_rep                 0.004     762.436       3.050
 pro_close                    1.000      51.194      51.194
 fa_pair                      0.490     -36.653     -17.960
 hbond_sr_bb                  0.585     -42.791     -25.033
 hbond_lr_bb                  1.170     -79.030     -92.465
 hbond_bb_sc                  1.170     -23.280     -27.238
 hbond_sc                     1.100      -9.753     -10.728
 dslf_ss_dst                  0.500      12.611       6.306
 dslf_cs_ang                  2.000      12.161      24.322
 dslf_ss_dih                  5.000       6.513      32.565
 dslf_ca_dih                  5.000       0.229       1.146
 rama                         0.200      65.556      13.111
 omega                        0.500     207.034     103.517
 fa_dun                       0.560     943.916     528.593
 p_aa_pp                      0.320     -83.106     -26.594
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.436       0.873
---------------------------------------------------
 Total weighted score:                      455.031
devel.AnchoredDesign.AnchoredPerturbMover: One perturb took 21.58 seconds
devel.AnchoredDesign.AnchoredPerturbMover: perturb steps complete
devel.AnchoredDesign.AnchoredRefineMover: entering refine steps
devel.AnchoredDesign.AnchoredRefineMover: fullatom score upon entering refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1306.587   -1045.270
 fa_rep                       0.440     945.577     416.054
 fa_sol                       0.650     832.565     541.167
 fa_intra_rep                 0.004     762.436       3.050
 pro_close                    1.000      51.194      51.194
 fa_pair                      0.490     -36.653     -17.960
 hbond_sr_bb                  0.585     -42.791     -25.033
 hbond_lr_bb                  1.170     -79.030     -92.465
 hbond_bb_sc                  1.170     -23.280     -27.238
 hbond_sc                     1.100      -9.753     -10.728
 dslf_ss_dst                  0.500      12.611       6.306
 dslf_cs_ang                  2.000      12.161      24.322
 dslf_ss_dih                  5.000       6.513      32.565
 dslf_ca_dih                  5.000       0.229       1.146
 rama                         0.200      65.556      13.111
 omega                        0.500     207.034     103.517
 fa_dun                       0.560     943.916     528.593
 p_aa_pp                      0.320     -83.106     -26.594
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.436       0.873
---------------------------------------------------
 Total weighted score:                      455.031
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating Small & ShearMover for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: using no-sidechains MoveMap for minimization in normal refine cycles
devel.AnchoredDesign.AnchoredRefineMover:    Current     Low    total cycles =100, second resfile at 67
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 1  453.368  453.368
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 2  453.368  453.368
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 3  450.377  450.377
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 1 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 4  449.99  449.99
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 5  449.804  449.804
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 6  448.984  448.984
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 7  447.371  447.371
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 8  446.781  446.781
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 9  445.849  445.849
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 10  445.848  445.848
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 11  445.372  445.372
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 12  445.372  445.372
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 13  445.123  445.123
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 14  444.539  444.539
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 15  442.512  442.512
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 19 score/deriv cals, 5 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 16  441.354  441.354
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 28 score/deriv cals, 4 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 17  440.833  440.833
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 18  439.487  439.487
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 19  439.492  439.487
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 67 score/deriv cals, 19 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 20  438.794  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 33 score/deriv cals, 5 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 21  438.794  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 22  438.794  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 33 score/deriv cals, 5 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 23  438.794  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 24  442.625  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 25  442.578  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 26  442.311  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 27  442.209  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 28  441.647  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 29  441.465  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 30  441.409  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 31  441.747  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 32  441.791  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 33  442.635  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 34  442.75  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 35  442.881  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 36  442.991  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 37  442.672  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 38  442.672  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 39  442.774  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 40  442.777  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 41  442.777  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 42  442.777  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 43  443.19  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 44  442.939  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 6 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 45  443.061  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 0 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 46  442.446  438.794
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 47  442.108  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 48  442.108  438.794
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 49  441.731  438.794
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 7328 rotamers at 72 positions.
core.pack.pack_rotamers: IG: 3112708 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 50  429.016  429.016
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 51  429.001  429.001
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 52  429.159  429.001
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 14 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 53  429.29  429.001
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 54  429.545  429.001
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 55  429.545  429.001
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 56  429.723  429.001
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 5 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 57  428.597  428.597
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 58  428.351  428.351
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 59  428.127  428.127
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 60  428.295  428.127
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 61  428.169  428.127
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 14 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 62  428.169  428.127
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 19 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 63  428.309  428.127
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 64  427.847  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 14 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 65  427.847  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 66  428.437  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 67  428.609  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 68  428.657  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 69  428.657  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 70  428.657  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 71  428.427  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 72  428.427  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 73  428.571  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 74  429.214  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 75  428.358  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 76  428.358  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 77  428.902  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 78  428.891  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 79  429.093  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 80  428.798  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 81  429.216  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 82  428.88  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 83  429.168  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 84  429.235  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 85  429.093  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 86  429.924  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 87  429.469  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 88  429.397  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 89  429.691  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 90  429.41  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 91  429.367  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 92  429.391  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 93  429.86  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 94  429.86  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 14 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 95  429.86  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 96  429.692  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 97  429.741  427.847
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 98  429.847  427.847
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 99  429.816  427.847
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 7233 rotamers at 72 positions.
core.pack.pack_rotamers: IG: 3073656 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 100  428.93  427.847
devel.AnchoredDesign.AnchoredRefineMover: fullatom score exiting refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1306.915   -1045.532
 fa_rep                       0.440     923.786     406.466
 fa_sol                       0.650     837.476     544.360
 fa_intra_rep                 0.004     755.646       3.023
 pro_close                    1.000      51.043      51.043
 fa_pair                      0.490     -38.954     -19.088
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -80.937     -94.696
 hbond_bb_sc                  1.170     -25.401     -29.719
 hbond_sc                     1.100     -10.973     -12.070
 dslf_ss_dst                  0.500      15.102       7.551
 dslf_cs_ang                  2.000      12.746      25.491
 dslf_ss_dih                  5.000       5.814      29.072
 dslf_ca_dih                  5.000       0.230       1.148
 rama                         0.200      67.830      13.566
 omega                        0.500     206.956     103.478
 fa_dun                       0.560     923.510     517.165
 p_aa_pp                      0.320     -81.795     -26.174
 ref                          1.000     -22.270     -22.270
 chainbreak                   2.000       0.100       0.199
---------------------------------------------------
 Total weighted score:                      427.995
One refine took 157.05 seconds
devel.AnchoredDesign.AnchoredRefineMover: refine steps complete
devel.AnchoredDesign.LoopAnalyzerMover: running LoopAnalyzerMover
devel.AnchoredDesign.InterfaceAnalyzerMover: Making an interface set with default calculator.
core.pack.task: Packer task: initialize from command line() 
protocols.moves.RigidBodyMover: Translate: Jump (before): RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -7.98893 -14.9744 -21.5521  
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -191.028 -984.773 139.655  
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 59 rotamers at 59 positions.
core.pack.pack_rotamers: IG: 172556 bytes
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 59 rotamers at 59 positions.
core.pack.pack_rotamers: IG: 155516 bytes
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of complex: -17.5593
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of separated: -4.52032
devel.AnchoredDesign.InterfaceAnalyzerMover: radii: [ 1.89, 1.89, 2.1285, 2.0115, 1.9485, 1.665, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.701, 1.44, 2.1285, 1.89, 1.44, 2.0425, 0.54, 1.08, 1.08, 0.54, 1.44, 1.71, 2.07, 2.22, 2.36, 1.09, 0.78, 0.65, 1.185, 1.2986, 1.3638, 1.7638, 0, 0, 0, ]
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: LEU246 Donor Atm:  atomno= 1 rsd= 246  ( N  ) Acc Res: TYR22 Acc Atm:  atomno= 12 rsd= 22  ( OH ) Hbond_SASA: 6.88215 Possible SASA: 202.711 SASA ratio: 0.0339506 Initial HBond E: -0.917424 Adjusted: -0.85513
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ALA244 Donor Atm:  atomno= 1 rsd= 244  ( N  ) Acc Res: PHE24 Acc Atm:  atomno= 4 rsd= 24  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.20228 Adjusted: -1.20228
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: HIS40 Acc Atm:  atomno= 10 rsd= 40  ( NE2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.0423212 Adjusted: -0.0423212
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 10 rsd= 242  ( NH1) Acc Res: ASP171 Acc Atm:  atomno= 7 rsd= 171  ( OD1) Hbond_SASA: 1.87695 Possible SASA: 202.711 SASA ratio: 0.00925926 Initial HBond E: -1.14628 Adjusted: -1.12506
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: ASP171 Acc Atm:  atomno= 8 rsd= 171  ( OD2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.20067 Adjusted: -1.20067
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLN174 Donor Atm:  atomno= 9 rsd= 174  ( NE2) Acc Res: ALA243 Acc Atm:  atomno= 4 rsd= 243  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.736743 Adjusted: -0.736743
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLN174 Donor Atm:  atomno= 9 rsd= 174  ( NE2) Acc Res: LEU261 Acc Atm:  atomno= 4 rsd= 261  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.04403 Adjusted: -1.04403
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: SER177 Donor Atm:  atomno= 1 rsd= 177  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.993113 Adjusted: -0.993113
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: SER192 Acc Atm:  atomno= 4 rsd= 192  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.305549 Adjusted: -0.305549
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLY194 Donor Atm:  atomno= 1 rsd= 194  ( N  ) Acc Res: ARG240 Acc Atm:  atomno= 4 rsd= 240  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.16365 Adjusted: -1.16365
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: GLY196 Acc Atm:  atomno= 4 rsd= 196  ( O  ) Hbond_SASA: 3.12825 Possible SASA: 202.711 SASA ratio: 0.0154321 Initial HBond E: -0.636686 Adjusted: -0.617035
devel.AnchoredDesign.InterfaceAnalyzerMover: Computing delta unsat polar residues...
devel.AnchoredDesign.AnchoredDesignMover: One perturb/refine took 181.24 seconds
protocols.jd2.JobDistributor: 1zr0.CD_0003 reported success in 181 seconds
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
protocols.jd2.PDBJobInputter: filling pose from saved copy 1zr0.CD.pdb
devel.AnchoredDesign.AnchorClasses: checking/(re)setting loop cutpoints; loops become:
devel.AnchoredDesign.AnchorClasses: LOOP 237 244 238 0 0
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  EDGE 223 242 1  EDGE 242 239 -1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 238 -1 
devel.AnchoredDesign.AnchoredDesignMover: anchored_design_fold_tree: FOLD_TREE  EDGE 1 223 -1  JEDGE 223 242 1 C N  INTRA_RES_STUB  EDGE 242 239 -1  EDGE 242 245 -1  EDGE 245 286 -1  EDGE 245 236 2  EDGE 236 224 -1  EDGE 236 238 -1 
devel.AnchoredDesign.Anchor_Movers: pose says 'is_cutpoint(#)': 223 238 286 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_LOWER': 238 
devel.AnchoredDesign.Anchor_Movers: pose says 'has_variant_type CUTPOINT_UPPER': 239 
devel.AnchoredDesign.AnchoredPerturbMover: entering perturb steps
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of starting PDB: 650.008
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1313.939   -1051.151
 fa_rep                       0.440    1403.962     617.743
 fa_sol                       0.650     839.100     545.415
 fa_intra_rep                 0.004     795.266       3.181
 pro_close                    1.000      53.551      53.551
 fa_pair                      0.490     -36.482     -17.876
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -79.948     -93.539
 hbond_bb_sc                  1.170     -18.725     -21.908
 hbond_sc                     1.100      -7.330      -8.063
 dslf_ss_dst                  0.500      -6.940      -3.470
 dslf_cs_ang                  2.000       6.953      13.906
 dslf_ss_dih                  5.000       2.897      14.485
 dslf_ca_dih                  5.000       0.182       0.912
 rama                         0.200      69.379      13.876
 omega                        0.500     207.924     103.962
 fa_dun                       0.560     984.292     551.204
 p_aa_pp                      0.320     -80.109     -25.635
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.007       0.014
---------------------------------------------------
 Total weighted score:                      650.008
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of starting PDB: -51.8501
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.263       0.526
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -79.006     -79.006
 rama                         1.000      69.379      69.379
 chainbreak                   2.000       0.007       0.014
---------------------------------------------------
 Total weighted score:                      -51.850
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating fragment-based perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover:    Current     Low    total cycles =50
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 1  -51.8501  -51.8501
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 2  -51.8501  -51.8501
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 3  -51.8501  -51.8501
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
devel.AnchoredDesign.AnchoredPerturbMover: 4  -51.8625  -51.8625
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
devel.AnchoredDesign.AnchoredPerturbMover: 5  -51.7078  -51.8625
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 6  -51.7078  -51.8625
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 7  -51.7078  -51.8625
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 8  -51.7078  -51.8625
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 9  -52.3242  -52.3242
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 10  -52.3242  -52.3242
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 11  -53.1497  -53.1497
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 12  -53.1497  -53.1497
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 13  -53.1946  -53.1946
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
devel.AnchoredDesign.AnchoredPerturbMover: 14  -55.7639  -55.7639
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 15  -55.7639  -55.7639
protocols.loops.KinematicWrapper: KinematicMover closed in 3 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 16  -55.7639  -55.7639
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 17  -55.7639  -55.7639
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 18  -55.7639  -55.7639
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 19  -55.7639  -55.7639
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.0783391 Finite Diff= 0.0628598
devel.AnchoredDesign.AnchoredPerturbMover: 20  -55.7639  -55.7639
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -2.2999 Finite Diff= 1.79181
devel.AnchoredDesign.AnchoredPerturbMover: 21  -55.7639  -55.7639
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
devel.AnchoredDesign.AnchoredPerturbMover: 22  -55.2444  -55.7639
protocols.loops.KinematicWrapper: KinematicMover closed in 2 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 23  -55.2405  -55.7639
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 24  -55.2405  -55.7639
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 25  -55.2405  -55.7639
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 26  -55.2405  -55.7639
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 27  -55.2405  -55.7639
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 28  -55.2405  -55.7639
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 29  -54.0031  -55.7639
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 30  -55.3282  -55.7639
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.321619 Finite Diff= 0.042442
devel.AnchoredDesign.AnchoredPerturbMover: 31  -55.3739  -55.7639
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
devel.AnchoredDesign.AnchoredPerturbMover: 32  -55.6641  -55.7639
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 33  -56.8231  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 34  -56.8231  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 35  -56.8231  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.optimization.LineMinimizer: Inaccurate G! step= 1.90735e-06 Deriv= -0.492669 Finite Diff= 0.224141
devel.AnchoredDesign.AnchoredPerturbMover: 36  -56.8231  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 37  -56.8231  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 38  -56.8231  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 39  -56.8231  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 40  -56.8231  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 41  -56.8231  -56.8231
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.142131 Finite Diff= 0.70819
devel.AnchoredDesign.AnchoredPerturbMover: 42  -56.8231  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 43  -56.8231  -56.8231
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.123181 Finite Diff= 0.642977
devel.AnchoredDesign.AnchoredPerturbMover: 44  -56.7255  -56.8231
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
devel.AnchoredDesign.AnchoredPerturbMover: 45  -56.7255  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 46  -56.7255  -56.8231
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.optimization.LineMinimizer: Inaccurate G! step= 3.8147e-06 Deriv= -0.123181 Finite Diff= 0.642978
devel.AnchoredDesign.AnchoredPerturbMover: 47  -56.7255  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 48  -56.7255  -56.8231
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
devel.AnchoredDesign.AnchoredPerturbMover: 49  -56.7255  -56.8231
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
devel.AnchoredDesign.AnchoredPerturbMover: 50  -56.7255  -56.8231
devel.AnchoredDesign.AnchoredPerturbMover: centroid score of final perturbed PDB: -56.8231
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          2.000       0.263       0.526
 hbond_sr_bb                  1.000     -42.764     -42.764
 hbond_lr_bb                  1.000     -79.159     -79.159
 rama                         1.000      64.454      64.454
 chainbreak                   2.000       0.060       0.119
---------------------------------------------------
 Total weighted score:                      -56.823
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 2270 rotamers at 71 positions.
core.pack.pack_rotamers: IG: 1339248 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 36 score/deriv cals, 8 narrow-from-wide updates, 5 full updates.
devel.AnchoredDesign.AnchoredPerturbMover: fullatom score of perturbed, refullatomized, repacked/minimized PDB: 402.963
devel.AnchoredDesign.AnchoredPerturbMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1309.159   -1047.327
 fa_rep                       0.440     926.957     407.861
 fa_sol                       0.650     837.917     544.646
 fa_intra_rep                 0.004     766.477       3.066
 pro_close                    1.000      51.257      51.257
 fa_pair                      0.490     -36.415     -17.843
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -80.293     -93.943
 hbond_bb_sc                  1.170     -23.877     -27.936
 hbond_sc                     1.100     -10.631     -11.694
 dslf_ss_dst                  0.500     -11.734      -5.867
 dslf_cs_ang                  2.000       7.297      14.593
 dslf_ss_dih                  5.000       2.811      14.054
 dslf_ca_dih                  5.000       0.179       0.895
 rama                         0.200      64.813      12.963
 omega                        0.500     208.960     104.480
 fa_dun                       0.560     940.660     526.770
 p_aa_pp                      0.320     -82.975     -26.552
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.069       0.138
---------------------------------------------------
 Total weighted score:                      402.963
devel.AnchoredDesign.AnchoredPerturbMover: One perturb took 20.25 seconds
devel.AnchoredDesign.AnchoredPerturbMover: perturb steps complete
devel.AnchoredDesign.AnchoredRefineMover: entering refine steps
devel.AnchoredDesign.AnchoredRefineMover: fullatom score upon entering refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1309.159   -1047.327
 fa_rep                       0.440     926.957     407.861
 fa_sol                       0.650     837.917     544.646
 fa_intra_rep                 0.004     766.477       3.066
 pro_close                    1.000      51.257      51.257
 fa_pair                      0.490     -36.415     -17.843
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -80.293     -93.943
 hbond_bb_sc                  1.170     -23.877     -27.936
 hbond_sc                     1.100     -10.631     -11.694
 dslf_ss_dst                  0.500     -11.734      -5.867
 dslf_cs_ang                  2.000       7.297      14.593
 dslf_ss_dih                  5.000       2.811      14.054
 dslf_ca_dih                  5.000       0.179       0.895
 rama                         0.200      64.813      12.963
 omega                        0.500     208.960     104.480
 fa_dun                       0.560     940.660     526.770
 p_aa_pp                      0.320     -82.975     -26.552
 ref                          1.000     -21.580     -21.580
 chainbreak                   2.000       0.069       0.138
---------------------------------------------------
 Total weighted score:                      402.963
protocols.loops.KinematicWrapper: respect_this_movemap has restricted loop pivots to these positions: 237 238 239 240 241 243 244
devel.AnchoredDesign.AnchoredPerturbMover: creating KinematicWrapper with loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating Small & ShearMover for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: creating CCD-closure after perturbation for loop 237 244
devel.AnchoredDesign.AnchoredRefineMover: using no-sidechains MoveMap for minimization in normal refine cycles
devel.AnchoredDesign.AnchoredRefineMover:    Current     Low    total cycles =100, second resfile at 67
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 6 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 1  400.243  400.243
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 29 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 2  399.209  399.209
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 26 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 3  397.071  397.071
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 25 score/deriv cals, 0 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 4  397.243  397.071
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 5  397.246  397.071
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 6  397.264  397.071
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 7  396.98  396.98
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 19 score/deriv cals, 1 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 8  396.539  396.539
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 9  396.514  396.514
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 10  396.479  396.479
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 26 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 11  396.479  396.479
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 5 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 12  396.878  396.479
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 13  396.874  396.479
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 14  396.487  396.479
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 15  396.487  396.479
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 16  396.487  396.479
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 17  396.487  396.479
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 2 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 18  396.487  396.479
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 19  396.439  396.439
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 20  396.378  396.378
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 21  396.372  396.372
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 22  396.36  396.36
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 23  396.322  396.322
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 22 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 24  396.322  396.322
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 25  396.031  396.031
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 26  396.242  396.031
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 27  395.729  395.729
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 28  395.713  395.713
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 29  395.713  395.713
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 46 score/deriv cals, 7 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 30  395.397  395.397
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 31  395.323  395.323
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 32  395.381  395.323
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 33  395.381  395.323
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 34  395.381  395.323
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 5 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 35  395.381  395.323
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 36  395.564  395.323
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 37  395.217  395.217
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 1 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 38  395.217  395.217
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 39  395.299  395.217
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 5 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 40  395.269  395.217
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 41  395.431  395.217
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 5 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 42  395.463  395.217
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 35 score/deriv cals, 6 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 43  395.381  395.217
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 1 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 44  395.581  395.217
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 45  395.57  395.217
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 34 score/deriv cals, 7 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 46  395.17  395.17
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 30 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 47  395.17  395.17
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 48  395.17  395.17
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 3 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 49  395.209  395.17
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 6339 rotamers at 72 positions.
core.pack.pack_rotamers: IG: 2864940 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 0 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 50  391.815  391.815
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 28 score/deriv cals, 2 narrow-from-wide updates, 6 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 51  390.561  390.561
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 52  390.493  390.493
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 1 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 53  390.493  390.493
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 34 score/deriv cals, 8 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 54  390.493  390.493
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 35 score/deriv cals, 9 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 55  390.493  390.493
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 56  390.485  390.485
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 57  390.485  390.485
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/240/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 58  390.485  390.485
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 59  390.35  390.35
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 60  390.342  390.342
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 61  389.358  389.358
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 0 narrow-from-wide updates, 4 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 62  389.358  389.358
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 38 score/deriv cals, 4 narrow-from-wide updates, 8 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 63  389.358  389.358
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 64  389.358  389.358
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 3 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 65  389.358  389.358
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 66  389.354  389.354
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 67  389.12  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 68  389.304  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 6 score/deriv cals, 1 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 69  389.304  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 7 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 70  389.304  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 0 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 71  389.291  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 5 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 72  389.291  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 73  389.264  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 30 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 74  389.264  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 15 score/deriv cals, 4 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 75  390.297  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 30 score/deriv cals, 7 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 76  390.297  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 16 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 77  390.899  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/241/243
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 78  390.755  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 11 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 79  390.927  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/238/239
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 80  390.343  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 23 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 81  390.343  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 5 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 82  389.678  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 7 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 83  390.19  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 10 score/deriv cals, 3 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 84  390.19  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 237/239/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 20 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 85  390.19  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 19 score/deriv cals, 5 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 86  389.788  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 241/243/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 9 score/deriv cals, 4 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 87  389.773  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 18 score/deriv cals, 4 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 88  390.488  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 6 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 89  390.434  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 3 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 90  390.138  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 21 score/deriv cals, 1 narrow-from-wide updates, 3 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 91  390.138  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 239/240/241
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 0 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 92  390.026  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 93  389.884  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 238/239/240
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 5 narrow-from-wide updates, 0 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 94  389.429  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 12 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 95  389.439  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 24 score/deriv cals, 6 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 96  389.439  389.12
protocols.loops.KinematicWrapper: KinematicMover closed in 1 cycles; loop was begin/middle/end 240/241/244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 13 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 97  389.681  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 17 score/deriv cals, 2 narrow-from-wide updates, 2 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 98  390.564  389.12
protocols.loops.CcdLoopClosureMover: Closing loop 237 244
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 99  390.564  389.12
core.pack.task: Packer task: initialize from command line() 
core.pack.interaction_graph.interaction_graph_factory: Instantiating LinearMemoryInteractionGraph
core.pack.pack_rotamers: built 6050 rotamers at 70 positions.
core.pack.pack_rotamers: IG: 2752908 bytes
core.pack.task: Packer task: initialize from command line() 
core.scoring.NeighborList: Minimization stats: 8 score/deriv cals, 2 narrow-from-wide updates, 1 full updates.
devel.AnchoredDesign.AnchoredRefineMover: 100  389.986  389.12
devel.AnchoredDesign.AnchoredRefineMover: fullatom score exiting refine mode:
devel.AnchoredDesign.AnchoredRefineMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 fa_atr                       0.800   -1307.901   -1046.321
 fa_rep                       0.440     918.211     404.013
 fa_sol                       0.650     838.842     545.247
 fa_intra_rep                 0.004     749.158       2.997
 pro_close                    1.000      51.026      51.026
 fa_pair                      0.490     -37.206     -18.231
 hbond_sr_bb                  0.585     -42.764     -25.017
 hbond_lr_bb                  1.170     -79.960     -93.553
 hbond_bb_sc                  1.170     -25.872     -30.270
 hbond_sc                     1.100      -8.944      -9.838
 dslf_ss_dst                  0.500     -10.811      -5.406
 dslf_cs_ang                  2.000       7.022      14.044
 dslf_ss_dih                  5.000       2.847      14.237
 dslf_ca_dih                  5.000       0.178       0.890
 rama                         0.200      67.024      13.405
 omega                        0.500     206.790     103.395
 fa_dun                       0.560     924.384     517.655
 p_aa_pp                      0.320     -82.390     -26.365
 ref                          1.000     -22.990     -22.990
 chainbreak                   2.000       0.098       0.195
---------------------------------------------------
 Total weighted score:                      389.113
One refine took 130.06 seconds
devel.AnchoredDesign.AnchoredRefineMover: refine steps complete
devel.AnchoredDesign.LoopAnalyzerMover: running LoopAnalyzerMover
devel.AnchoredDesign.InterfaceAnalyzerMover: Making an interface set with default calculator.
core.pack.task: Packer task: initialize from command line() 
protocols.moves.RigidBodyMover: Translate: Jump (before): RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -7.98893 -14.9744 -21.5521  
protocols.moves.RigidBodyMover: Translate: Jump (after):  RT -0.769642 0.637012 0.0432188 -0.0333541 -0.107712 0.993622 0.637604 0.763292 0.104147 -201.522 -986.051 118.287  
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 57 rotamers at 57 positions.
core.pack.pack_rotamers: IG: 170756 bytes
core.pack.interaction_graph.interaction_graph_factory: Instantiating PDInteractionGraph
core.pack.pack_rotamers: built 57 rotamers at 57 positions.
core.pack.pack_rotamers: IG: 153148 bytes
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of complex: -13.4584
devel.AnchoredDesign.InterfaceAnalyzerMover: Centroid score of separated: -1.38254
devel.AnchoredDesign.InterfaceAnalyzerMover: radii: [ 1.89, 1.89, 2.1285, 2.0115, 1.9485, 1.665, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.44, 1.701, 1.44, 2.1285, 1.89, 1.44, 2.0425, 0.54, 1.08, 1.08, 0.54, 1.44, 1.71, 2.07, 2.22, 2.36, 1.09, 0.78, 0.65, 1.185, 1.2986, 1.3638, 1.7638, 0, 0, 0, ]
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: LEU246 Donor Atm:  atomno= 1 rsd= 246  ( N  ) Acc Res: TYR22 Acc Atm:  atomno= 12 rsd= 22  ( OH ) Hbond_SASA: 6.2565 Possible SASA: 202.711 SASA ratio: 0.0308642 Initial HBond E: -1.33466 Adjusted: -1.25228
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ALA244 Donor Atm:  atomno= 1 rsd= 244  ( N  ) Acc Res: PHE24 Acc Atm:  atomno= 4 rsd= 24  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.27046 Adjusted: -1.27046
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 10 rsd= 242  ( NH1) Acc Res: ASP171 Acc Atm:  atomno= 7 rsd= 171  ( OD1) Hbond_SASA: 1.87695 Possible SASA: 202.711 SASA ratio: 0.00925926 Initial HBond E: -1.15323 Adjusted: -1.13187
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: ASP171 Acc Atm:  atomno= 8 rsd= 171  ( OD2) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -1.20367 Adjusted: -1.20367
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLN174 Donor Atm:  atomno= 9 rsd= 174  ( NE2) Acc Res: CYS241 Acc Atm:  atomno= 4 rsd= 241  ( O  ) Hbond_SASA: 1.2513 Possible SASA: 202.711 SASA ratio: 0.00617284 Initial HBond E: -0.973893 Adjusted: -0.96187
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLY175 Donor Atm:  atomno= 1 rsd= 175  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.028144 Adjusted: -0.028144
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: SER177 Donor Atm:  atomno= 1 rsd= 177  ( N  ) Acc Res: ARG242 Acc Atm:  atomno= 4 rsd= 242  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.923686 Adjusted: -0.923686
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 1 rsd= 242  ( N  ) Acc Res: SER192 Acc Atm:  atomno= 4 rsd= 192  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.183926 Adjusted: -0.183926
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: GLY194 Donor Atm:  atomno= 1 rsd= 194  ( N  ) Acc Res: GLY240 Acc Atm:  atomno= 4 rsd= 240  ( O  ) Hbond_SASA: 0 Possible SASA: 202.711 SASA ratio: 0 Initial HBond E: -0.19845 Adjusted: -0.19845
devel.AnchoredDesign.InterfaceAnalyzerMover: Donor Res: ARG242 Donor Atm:  atomno= 11 rsd= 242  ( NH2) Acc Res: GLY196 Acc Atm:  atomno= 4 rsd= 196  ( O  ) Hbond_SASA: 2.5026 Possible SASA: 202.711 SASA ratio: 0.0123457 Initial HBond E: -0.636686 Adjusted: -0.620965
devel.AnchoredDesign.InterfaceAnalyzerMover: Computing delta unsat polar residues...
devel.AnchoredDesign.AnchoredDesignMover: One perturb/refine took 152.93 seconds
protocols.jd2.JobDistributor: 1zr0.CD_0004 reported success in 153 seconds
protocols.jd2.JobDistributor: no more batches to process... 
protocols.jd2.JobDistributor: 4 jobs considered, 4 jobs attempted in 684 seconds
apps.pilot.smlewis.AnchoredDesign: Whole run took 714 seconds
apps.pilot.smlewis.AnchoredDesign: ************************d**o**n**e**************************************
