core.init: Mini-Rosetta version 40504:40507M from https://svn.rosettacommons.org/source/trunk/mini
core.init: command: /home/smlewis/AnchorFinder/bin/loopmodel.linuxgccrelease @options -database /home/smlewis/MINI_CRON/minirosetta_database/
core.init: 'RNG device' seed mode, using '/dev/urandom', seed=1127037490 seed_offset=0 real_seed=1127037490
core.init.random: RandomGenerator:init: Normal mode, seed=1127037490 RG_type=mt19937
protocols::loopbuild: ==== Loop protocol: =================================================
protocols::loopbuild:  remodel        perturb_kic
protocols::loopbuild:  intermedrelax  no
protocols::loopbuild:  refine         refine_kic
protocols::loopbuild:  relax          no
core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set.  Created 7533 residue types
core.conformation.Conformation: [ WARNING ] missing heavyatom:  CB  on residue ALA 22
core.conformation.Conformation: [ WARNING ] missing heavyatom:  CB  on residue ALA 23
core.conformation.Conformation: [ WARNING ] missing heavyatom:  CB  on residue ALA 24
core.conformation.Conformation: [ WARNING ] missing heavyatom:  CB  on residue ALA 25
core.pack.task: Packer task: initialize from command line() 
core.pack.pack_missing_sidechains: packing residue number 22 because of missing atom number 5 atom name  CB 
core.pack.pack_missing_sidechains: packing residue number 23 because of missing atom number 5 atom name  CB 
core.pack.pack_missing_sidechains: packing residue number 24 because of missing atom number 5 atom name  CB 
core.pack.pack_missing_sidechains: packing residue number 25 because of missing atom number 5 atom name  CB 
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/pdb_pair_stats_fine
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/scoring/score_functions/hbonds/standard_params/HBPoly1D.csv
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/scoring/score_functions/hbonds/standard_params/HBFadeIntervals.csv
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/scoring/score_functions/hbonds/standard_params/HBEval.csv
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/env_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/cbeta_den.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/pair_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/cenpack_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/env_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/cbeta_den.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/pair_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/cenpack_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/CEN6_mem_env_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/CEN10_mem_env_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/memcbeta_den.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/mem_pair_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/P_AA
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/P_AA_n
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/P_AA_pp
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/Rama_smooth_dyn.dat_ss_6.4
core.pack.dunbrack: Dunbrack library took 0.02 seconds to load from binary
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 4 rotamers at 4 positions.
core.pack.pack_rotamers: IG: 4104 bytes
core.pose.util: Cannot open psipred_ss2 file tt
protocols.loops.loops_main: can not open DSSP file tt
protocols.loops.loops_main: Frag libraries debug 1FNA_AAAAinsert_9mer.gz 9
core.io.fragments: reading fragments from file: 1FNA_AAAAinsert_9mer.gz ... 
core.io.fragments: rosetta++ fileformat detected! Calling legacy reader... 
core.fragments.ConstantLengthFragSet: finished reading top 200 9mer fragments from file 1FNA_AAAAinsert_9mer.gz
protocols.loops.loops_main: Frag libraries debug 1FNA_AAAAinsert_3mer.gz 3
core.io.fragments: reading fragments from file: 1FNA_AAAAinsert_3mer.gz ... 
core.io.fragments: rosetta++ fileformat detected! Calling legacy reader... 
core.fragments.ConstantLengthFragSet: finished reading top 200 3mer fragments from file 1FNA_AAAAinsert_3mer.gz
protocols.loops.loops_main: Fragment libraries: 3   18600
protocols.loops.loops_main: Fragment libraries: 9   17400
protocols::loopbuild: Annotated sequence of start_pose: R[ARG_p:NtermProteinFull]DLEVVAATPTSLLISWDAPAAAAAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT[THR_p:CtermProteinFull]
loops: LOOP formats were recently reconciled - with *some* backwards compatibility. Please check your definition files!
loops: Please check that this is what you intended to read in: 
loops: LOOP  begin  end  cut  skip_rate  extended
loops: LOOP 18 28 21 0 0
protocols.jobdist.JobDistributors: Looking for an available job: 1 1 S 1
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/env_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/cbeta_den.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/pair_log.txt
basic.io.database: Database file opened: /home/smlewis/MINI_CRON/minirosetta_database/cenpack_log.txt
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: standard
core.scoring.ScoreFunctionFactory: SCOREFUNCTION PATCH: score12
protocols.looprelax: ==== Loop protocol: =================================================
protocols.looprelax:  remodel        perturb_kic
protocols.looprelax:  intermedrelax  no
protocols.looprelax:  refine         refine_kic
protocols.looprelax:  relax          no
core.chemical.ResidueTypeSet: Finished initializing centroid residue type set.  Created 1202 residue types
protocols.looprelax: ====================================================================================
protocols.looprelax: ===
protocols.looprelax: ===   Initial Building     
protocols.looprelax: ===
protocol.loops.LoopMover: ALL_LOOPS:LOOP  begin  end  cut  skip_rate  extended
protocol.loops.LoopMover: LOOP 18 28 21 0 0
protocol.loops.LoopMover: 
protocol.loops.LoopMover: SELECTEDLOOPS:LOOP  begin  end  cut  skip_rate  extended
protocol.loops.LoopMover: LOOP 18 28 21 0 0
protocol.loops.LoopMover: 
protocol.loops.LoopMover: Building Loop: LOOP 18 28 21 0 0
protocol.loops.LoopMover: Building Loop attempt: 0
protocol.loops.LoopMover: ***** CCD CLOSURE *****
protocols.loops.loops_main: Pose fold tree FOLD_TREE  EDGE 1 16 -1  EDGE 16 21 -1  EDGE 16 30 1  EDGE 30 22 -1  EDGE 30 93 -1 
protocols.loops.loops_main: 
protocol.loops.LoopMover: Number of cycles: cycles2 and cycles3 2 55
protocol.loops.LoopMover:  vdw               hbond_sr_bb       hbond_lr_bb       pair              rama              env               cbeta             rg                chainbreak       
protocol.loops.LoopMover:   925.928  122.220   -4.687  -41.753  -20.790    0.503  -24.046   32.423   26.896  835.163
protocol.loops.LoopMover:   -26.857    0.000   -7.617  -41.998  -21.390    1.211  -17.213   31.933   28.144    0.074
protocol.loops.LoopMover: FragCount: 220
protocol.loops.LoopMover: Looptime 2
protocol.loops.LoopMover: ------------------------------------------------------------
 Scores                       Weight   Raw Score Wghtd.Score
------------------------------------------------------------
 vdw                          1.000       0.774       0.774
 hbond_sr_bb                  1.000      -6.488      -6.488
 hbond_lr_bb                  1.000     -42.488     -42.488
 pair                         1.000     -21.909     -21.909
 rama                         0.100      21.122       2.112
 env                          1.000     -18.880     -18.880
 cbeta                        1.000      31.576      31.576
 rg                           2.000      13.918      27.836
 chainbreak                   1.000       0.240       0.240
---------------------------------------------------
 Total weighted score:                      -27.227
-------------------------
protocols.moves.MonteCarlo:              unk trials=    220;  accepts= 0.1545;  energy_drop/trial=  -4.33252
protocol.loops.LoopMover: Chainbreak: 0.239782 Max: 0.2
protocol.loops.LoopMover: Loopstat:    18   28   18   28   11  time   2.0    0  time   0.0  -27.2268   noext 
protocols::checkpoint: Deleting checkpoints of InitialBuild
protocols.looprelax: ====================================================================================
protocols.looprelax: ===
protocols.looprelax: ===   Remodel    
protocols.looprelax: ===
protocol.loops.LoopMover: ALL_LOOPS:LOOP  begin  end  cut  skip_rate  extended
protocol.loops.LoopMover: LOOP 18 28 21 0 0
protocol.loops.LoopMover: 
protocol.loops.LoopMover: SELECTEDLOOPS:LOOP  begin  end  cut  skip_rate  extended
protocol.loops.LoopMover: LOOP 18 28 21 0 0
protocol.loops.LoopMover: 
protocol.loops.LoopMover: Building Loop: LOOP 18 28 21 0 0
protocol.loops.LoopMover: Building Loop attempt: 0
protocol.loops.LoopMover: perturb_one_loop_with_KIC: 18 11
protocol.loops.LoopMover: remodel init temp: 2
protocol.loops.LoopMover: remodel final temp: 1
protocol.loops.LoopMover: kinematic initial perturb with start_res: 18  middle res: 23  end_res: 28
protocol.loops.LoopMover: loop rmsd before initial kinematic perturbation:27.3108
protocol.loops.LoopMover: not performing initial kinematic perturbation
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -27.2259 -27.2259
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3935
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4054
protocol.loops.LoopMover: new centroid perturb rmsd: 27.391
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4114
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4405
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4599
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4359
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4547
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4423
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4653
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4615
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4579
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4343
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4358
protocol.loops.LoopMover: new centroid perturb rmsd: 27.437
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4315
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4363
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4322
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4232
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4335
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4364
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4357
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4085
protocol.loops.LoopMover: new centroid perturb rmsd: 29.0375
protocol.loops.LoopMover: new centroid perturb rmsd: 29.0487
protocol.loops.LoopMover: new centroid perturb rmsd: 29.0369
protocol.loops.LoopMover: new centroid perturb rmsd: 28.9836
protocol.loops.LoopMover: new centroid perturb rmsd: 28.9622
protocol.loops.LoopMover: new centroid perturb rmsd: 28.9843
protocol.loops.LoopMover: new centroid perturb rmsd: 28.9705
protocol.loops.LoopMover: new centroid perturb rmsd: 29.063
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4991
protocol.loops.LoopMover: new centroid perturb rmsd: 27.5003
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4511
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4102
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4052
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4061
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4068
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3893
protocol.loops.LoopMover: new centroid perturb rmsd: 27.0426
protocol.loops.LoopMover: new centroid perturb rmsd: 27.8157
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3427
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3173
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3443
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3324
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3321
protocol.loops.LoopMover: new centroid perturb rmsd: 27.264
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3168
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1194
protocol.loops.LoopMover: new centroid perturb rmsd: 27.0966
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3272
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4123
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3531
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3011
protocol.loops.LoopMover: new centroid perturb rmsd: 27.2908
protocol.loops.LoopMover: new centroid perturb rmsd: 27.293
protocol.loops.LoopMover: new centroid perturb rmsd: 27.2856
protocol.loops.LoopMover: new centroid perturb rmsd: 27.276
protocol.loops.LoopMover: new centroid perturb rmsd: 27.2768
protocol.loops.LoopMover: new centroid perturb rmsd: 27.2715
protocol.loops.LoopMover: new centroid perturb rmsd: 27.2582
protocol.loops.LoopMover: new centroid perturb rmsd: 27.0162
protocol.loops.LoopMover: new centroid perturb rmsd: 26.9528
protocol.loops.LoopMover: new centroid perturb rmsd: 26.9412
protocol.loops.LoopMover: new centroid perturb rmsd: 26.9448
protocol.loops.LoopMover: new centroid perturb rmsd: 26.9412
protocol.loops.LoopMover: new centroid perturb rmsd: 26.9369
protocol.loops.LoopMover: new centroid perturb rmsd: 26.9203
protocol.loops.LoopMover: new centroid perturb rmsd: 26.907
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8957
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8866
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8917
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8513
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8149
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8128
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8494
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8387
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8737
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7401
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7404
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7739
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4846
protocol.loops.LoopMover: new centroid perturb rmsd: 26.5177
protocol.loops.LoopMover: new centroid perturb rmsd: 26.5366
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4693
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4864
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4054
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4046
protocol.loops.LoopMover: new centroid perturb rmsd: 28.3955
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4191
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4029
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4164
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4147
protocol.loops.LoopMover: new centroid perturb rmsd: 28.3961
protocol.loops.LoopMover: new centroid perturb rmsd: 28.3998
protocol.loops.LoopMover: new centroid perturb rmsd: 28.3686
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4554
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4611
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4722
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4749
protocol.loops.LoopMover: new centroid perturb rmsd: 28.84
protocol.loops.LoopMover: new centroid perturb rmsd: 28.5014
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4358
protocol.loops.LoopMover: new centroid perturb rmsd: 28.4903
protocol.loops.LoopMover: new centroid perturb rmsd: 28.552
protocol.loops.LoopMover: new centroid perturb rmsd: 28.5321
protocol.loops.LoopMover: new centroid perturb rmsd: 28.5149
protocol.loops.LoopMover: new centroid perturb rmsd: 28.5619
protocol.loops.LoopMover: new centroid perturb rmsd: 28.5814
protocol.loops.LoopMover: new centroid perturb rmsd: 28.5982
protocol.loops.LoopMover: new centroid perturb rmsd: 28.5931
protocol.loops.LoopMover: new centroid perturb rmsd: 28.548
protocol.loops.LoopMover: new centroid perturb rmsd: 28.5474
protocol.loops.LoopMover: new centroid perturb rmsd: 28.5484
protocol.loops.LoopMover: new centroid perturb rmsd: 28.5431
protocol.loops.LoopMover: new centroid perturb rmsd: 27.481
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4811
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4172
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4342
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4125
protocol.loops.LoopMover: new centroid perturb rmsd: 27.5113
protocol.loops.LoopMover: new centroid perturb rmsd: 27.5063
protocol.loops.LoopMover: new centroid perturb rmsd: 27.5081
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4538
protocol.loops.LoopMover: new centroid perturb rmsd: 27.461
protocol.loops.LoopMover: new centroid perturb rmsd: 27.4556
protocol.loops.LoopMover: new centroid perturb rmsd: 27.444
protocol.loops.LoopMover: new centroid perturb rmsd: 27.8159
protocol.loops.LoopMover: new centroid perturb rmsd: 27.703
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3745
protocol.loops.LoopMover: new centroid perturb rmsd: 27.5471
protocol.loops.LoopMover: new centroid perturb rmsd: 27.0466
protocol.loops.LoopMover: new centroid perturb rmsd: 27.0535
protocol.loops.LoopMover: new centroid perturb rmsd: 27.0031
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1838
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1501
protocol.loops.LoopMover: new centroid perturb rmsd: 27.136
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1312
protocol.loops.LoopMover: new centroid perturb rmsd: 27.135
protocol.loops.LoopMover: new centroid perturb rmsd: 27.134
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1298
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1243
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8891
protocol.loops.LoopMover: new centroid perturb rmsd: 26.5919
protocol.loops.LoopMover: new centroid perturb rmsd: 26.6115
protocol.loops.LoopMover: new centroid perturb rmsd: 26.6086
protocol.loops.LoopMover: new centroid perturb rmsd: 26.6096
protocol.loops.LoopMover: new centroid perturb rmsd: 26.6323
protocol.loops.LoopMover: new centroid perturb rmsd: 26.6436
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2427
protocol.loops.LoopMover: new centroid perturb rmsd: 26.238
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2413
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1847
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1858
protocol.loops.LoopMover: new centroid perturb rmsd: 26.723
protocol.loops.LoopMover: new centroid perturb rmsd: 26.727
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7078
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4627
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4456
protocol.loops.LoopMover: new centroid perturb rmsd: 25.739
protocol.loops.LoopMover: new centroid perturb rmsd: 25.8307
protocol.loops.LoopMover: new centroid perturb rmsd: 25.8536
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7885
protocol.loops.LoopMover: new centroid perturb rmsd: 25.8016
protocol.loops.LoopMover: new centroid perturb rmsd: 25.8185
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7925
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7106
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7059
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7003
protocol.loops.LoopMover: new centroid perturb rmsd: 25.5124
protocol.loops.LoopMover: new centroid perturb rmsd: 25.5035
protocol.loops.LoopMover: new centroid perturb rmsd: 25.4686
protocol.loops.LoopMover: new centroid perturb rmsd: 25.4645
protocol.loops.LoopMover: new centroid perturb rmsd: 25.3384
protocol.loops.LoopMover: new centroid perturb rmsd: 24.2133
protocol.loops.LoopMover: new centroid perturb rmsd: 24.2419
protocol.loops.LoopMover: new centroid perturb rmsd: 24.2444
protocol.loops.LoopMover: new centroid perturb rmsd: 25.0184
protocol.loops.LoopMover: new centroid perturb rmsd: 25.023
protocol.loops.LoopMover: new centroid perturb rmsd: 24.3481
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1624
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4621
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4592
protocol.loops.LoopMover: new centroid perturb rmsd: 26.5066
protocol.loops.LoopMover: new centroid perturb rmsd: 26.464
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4391
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4564
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1138
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1497
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2518
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2653
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2593
protocol.loops.LoopMover: new centroid perturb rmsd: 26.227
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2399
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2334
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2366
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2451
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2442
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2377
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2809
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3717
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1401
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1539
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1546
protocol.loops.LoopMover: new centroid perturb rmsd: 26.14
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1739
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1584
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1604
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1619
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1585
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1657
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1566
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1552
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1567
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1767
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1833
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1203
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1169
protocol.loops.LoopMover: new centroid perturb rmsd: 26.129
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1245
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1196
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9961
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1039
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1027
protocol.loops.LoopMover: new centroid perturb rmsd: 26.0851
protocol.loops.LoopMover: new centroid perturb rmsd: 26.0349
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9631
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9491
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9395
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9337
protocol.loops.LoopMover: new centroid perturb rmsd: 25.957
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9547
protocol.loops.LoopMover: new centroid perturb rmsd: 27.0865
protocol.loops.LoopMover: new centroid perturb rmsd: 27.0794
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1557
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1707
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1721
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1733
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1362
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1441
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1451
protocol.loops.LoopMover: new centroid perturb rmsd: 28.1196
protocol.loops.LoopMover: new centroid perturb rmsd: 28.099
protocol.loops.LoopMover: new centroid perturb rmsd: 28.1098
protocol.loops.LoopMover: new centroid perturb rmsd: 28.0975
protocol.loops.LoopMover: new centroid perturb rmsd: 28.1071
protocol.loops.LoopMover: new centroid perturb rmsd: 28.2687
protocol.loops.LoopMover: new centroid perturb rmsd: 28.1402
protocol.loops.LoopMover: new centroid perturb rmsd: 27.5924
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6441
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6196
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6913
protocol.loops.LoopMover: new centroid perturb rmsd: 27.7765
protocol.loops.LoopMover: new centroid perturb rmsd: 27.8375
protocol.loops.LoopMover: new centroid perturb rmsd: 27.3213
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8542
protocol.loops.LoopMover: new centroid perturb rmsd: 27.5939
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6749
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6955
protocol.loops.LoopMover: new centroid perturb rmsd: 27.702
protocol.loops.LoopMover: new centroid perturb rmsd: 23.538
protocol.loops.LoopMover: new centroid perturb rmsd: 23.5878
protocol.loops.LoopMover: new centroid perturb rmsd: 23.5876
protocol.loops.LoopMover: new centroid perturb rmsd: 23.5799
protocol.loops.LoopMover: new centroid perturb rmsd: 23.5797
protocol.loops.LoopMover: new centroid perturb rmsd: 23.5823
protocol.loops.LoopMover: new centroid perturb rmsd: 23.5797
protocol.loops.LoopMover: new centroid perturb rmsd: 23.5722
protocol.loops.LoopMover: new centroid perturb rmsd: 23.5741
protocol.loops.LoopMover: new centroid perturb rmsd: 23.621
protocol.loops.LoopMover: new centroid perturb rmsd: 23.8808
protocol.loops.LoopMover: new centroid perturb rmsd: 23.8561
protocol.loops.LoopMover: new centroid perturb rmsd: 23.9125
protocol.loops.LoopMover: new centroid perturb rmsd: 23.9118
protocol.loops.LoopMover: new centroid perturb rmsd: 23.7822
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7493
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7778
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8256
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8469
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8286
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8353
protocol.loops.LoopMover: new centroid perturb rmsd: 27.5774
protocol.loops.LoopMover: new centroid perturb rmsd: 27.567
protocol.loops.LoopMover: new centroid perturb rmsd: 27.5795
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6087
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6296
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6116
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6393
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6879
protocol.loops.LoopMover: new centroid perturb rmsd: 27.7263
protocol.loops.LoopMover: new centroid perturb rmsd: 27.7065
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6325
protocol.loops.LoopMover: new centroid perturb rmsd: 27.6118
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8178
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8174
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8268
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8286
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8161
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8169
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8094
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8126
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7671
protocol.loops.LoopMover: new centroid perturb rmsd: 26.775
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8142
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8488
protocol.loops.LoopMover: new centroid perturb rmsd: 26.842
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8753
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8485
protocol.loops.LoopMover: new centroid perturb rmsd: 26.85
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8652
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8694
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8552
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8545
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8585
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8494
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7884
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8003
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7921
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7755
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7429
protocol.loops.LoopMover: new centroid perturb rmsd: 26.7735
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8083
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8667
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8691
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8476
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8403
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8325
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8371
protocol.loops.LoopMover: new centroid perturb rmsd: 26.9073
protocol.loops.LoopMover: new centroid perturb rmsd: 26.9133
protocol.loops.LoopMover: new centroid perturb rmsd: 26.9083
protocol.loops.LoopMover: new centroid perturb rmsd: 26.8985
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1685
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1572
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1605
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1906
protocol.loops.LoopMover: new centroid perturb rmsd: 27.2041
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1961
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1741
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1299
protocol.loops.LoopMover: new centroid perturb rmsd: 27.133
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1547
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1769
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1004
protocol.loops.LoopMover: new centroid perturb rmsd: 27.102
protocol.loops.LoopMover: new centroid perturb rmsd: 27.1051
protocol.loops.LoopMover: new centroid perturb rmsd: 24.4792
protocol.loops.LoopMover: new centroid perturb rmsd: 24.6496
protocol.loops.LoopMover: new centroid perturb rmsd: 24.6554
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6055
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6169
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6427
protocol.loops.LoopMover: new centroid perturb rmsd: 25.5573
protocol.loops.LoopMover: new centroid perturb rmsd: 25.8843
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9248
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9252
protocol.loops.LoopMover: new centroid perturb rmsd: 26.0132
protocol.loops.LoopMover: new centroid perturb rmsd: 26.0022
protocol.loops.LoopMover: new centroid perturb rmsd: 26.0031
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9558
protocol.loops.LoopMover: new centroid perturb rmsd: 25.959
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9585
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9697
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9575
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9588
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9584
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9538
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9608
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9931
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9807
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9934
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9681
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9648
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9647
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9231
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9238
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9163
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9039
protocol.loops.LoopMover: new centroid perturb rmsd: 25.899
protocol.loops.LoopMover: new centroid perturb rmsd: 25.8807
protocol.loops.LoopMover: new centroid perturb rmsd: 25.8772
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7803
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7874
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7885
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7968
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6653
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6634
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6374
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6272
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6167
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6074
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6543
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6874
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7345
protocol.loops.LoopMover: new centroid perturb rmsd: 25.735
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7177
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6968
protocol.loops.LoopMover: new centroid perturb rmsd: 25.7022
protocol.loops.LoopMover: new centroid perturb rmsd: 25.695
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6847
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6883
protocol.loops.LoopMover: new centroid perturb rmsd: 25.8118
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1433
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1246
protocol.loops.LoopMover: new centroid perturb rmsd: 26.2915
protocol.loops.LoopMover: new centroid perturb rmsd: 26.132
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1383
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1464
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1441
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3924
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3739
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3289
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3271
protocol.loops.LoopMover: new centroid perturb rmsd: 26.33
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3297
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3311
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3307
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3799
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3753
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3775
protocol.loops.LoopMover: new centroid perturb rmsd: 26.3788
protocol.loops.LoopMover: new centroid perturb rmsd: 26.5564
protocol.loops.LoopMover: new centroid perturb rmsd: 26.5512
protocol.loops.LoopMover: new centroid perturb rmsd: 24.8568
protocol.loops.LoopMover: new centroid perturb rmsd: 24.8652
protocol.loops.LoopMover: new centroid perturb rmsd: 24.8054
protocol.loops.LoopMover: new centroid perturb rmsd: 24.8003
protocol.loops.LoopMover: new centroid perturb rmsd: 24.7305
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4234
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4268
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4206
protocol.loops.LoopMover: new centroid perturb rmsd: 26.4266
protocol.loops.LoopMover: new centroid perturb rmsd: 26.1483
protocol.loops.LoopMover: new centroid perturb rmsd: 24.8762
protocol.loops.LoopMover: new centroid perturb rmsd: 24.8654
protocol.loops.LoopMover: new centroid perturb rmsd: 24.8649
protocol.loops.LoopMover: new centroid perturb rmsd: 24.8669
protocol.loops.LoopMover: new centroid perturb rmsd: 24.7345
protocol.loops.LoopMover: new centroid perturb rmsd: 24.6221
protocol.loops.LoopMover: new centroid perturb rmsd: 24.6224
protocol.loops.LoopMover: new centroid perturb rmsd: 24.6329
protocol.loops.LoopMover: new centroid perturb rmsd: 28.9956
protocol.loops.LoopMover: new centroid perturb rmsd: 28.9918
protocol.loops.LoopMover: new centroid perturb rmsd: 25.9775
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6505
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6569
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6632
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6637
protocol.loops.LoopMover: new centroid perturb rmsd: 25.5933
protocol.loops.LoopMover: new centroid perturb rmsd: 25.5818
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6045
protocol.loops.LoopMover: new centroid perturb rmsd: 25.6009
protocol.loops.LoopMover: new centroid perturb rmsd: 25.5872
protocol.loops.LoopMover: Loopstat:    18   28   18   28   11  time  23.0    0  time   0.0  -29.8142   noext 
protocols::checkpoint: Deleting checkpoints of Remodel
protocols.looprelax: Buildtime: 23
protocols.looprelax: FOLD_TREE  EDGE 1 93 -1 
protocols.looprelax: 
protocols.looprelax: ====================================================================================
protocols.looprelax: ===
protocols.looprelax: ===   Fullatom 
protocols.looprelax: ===
protocols.looprelax: Annotated sequence before fa switch: R[ARG_p:NtermProteinFull]DLEVVAATPTSLLISWDAPAAAAAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT[THR_p:CtermProteinFull]
protocols.looprelax: No repacking required
protocols.looprelax: ====================================================================================
protocols.looprelax: ===
protocols.looprelax: ===   Refine 
protocols.looprelax: ===
protocols.looprelax: fold_tree_before_refine FOLD_TREE  EDGE 1 17 -1  EDGE 17 29 1  EDGE 17 21 -1  EDGE 29 22 -1  EDGE 29 93 -1 
protocols.looprelax: 
protocol.loops.LoopMover: refine init temp: 1.5
protocol.loops.LoopMover: refine final temp: 0.5
core.pack.task: Packer task: initialize from command line() 
protocol.loops.LoopMover: Not designing
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 567 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 343128 bytes
core.pack.task: Packer task: initialize from command line() 
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -137.471 -137.471
protocol.loops.LoopMover: cycle: 1  -137.471
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 1/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.7496
protocol.loops.LoopMover: energy after accepted move: -138.233
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.7605
protocol.loops.LoopMover: energy after accepted move: -139.136
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 2/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.8486
protocol.loops.LoopMover: energy after accepted move: -137.756
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5403
protocol.loops.LoopMover: energy after accepted move: -139.522
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 3/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5664
protocol.loops.LoopMover: energy after accepted move: -139.411
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 4/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.56
protocol.loops.LoopMover: energy after accepted move: -139.581
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.565
protocol.loops.LoopMover: energy after accepted move: -138.914
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 5/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5025
protocol.loops.LoopMover: energy after accepted move: -138.616
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 6/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6875
protocol.loops.LoopMover: energy after accepted move: -138.816
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6921
protocol.loops.LoopMover: energy after accepted move: -139.085
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 7/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3057
protocol.loops.LoopMover: energy after accepted move: -140.206
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.2958
protocol.loops.LoopMover: energy after accepted move: -140.457
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 8/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.0845
protocol.loops.LoopMover: energy after accepted move: -141.101
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 9/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3148
protocol.loops.LoopMover: energy after accepted move: -142.763
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.3047
protocol.loops.LoopMover: energy after accepted move: -142.893
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 10/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4217
protocol.loops.LoopMover: energy after accepted move: -143.431
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 11/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4117
protocol.loops.LoopMover: energy after accepted move: -143.441
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 12/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4265
protocol.loops.LoopMover: energy after accepted move: -143.399
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 13/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 14/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4325
protocol.loops.LoopMover: energy after accepted move: -143.551
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 15/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5714
protocol.loops.LoopMover: energy after accepted move: -143.691
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 16/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5844
protocol.loops.LoopMover: energy after accepted move: -143.269
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 17/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5892
protocol.loops.LoopMover: energy after accepted move: -141.833
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 18/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.6763
protocol.loops.LoopMover: energy after accepted move: -142.091
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.6469
protocol.loops.LoopMover: energy after accepted move: -141.806
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 19/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.6608
protocol.loops.LoopMover: energy after accepted move: -142.008
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 20/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.6561
protocol.loops.LoopMover: energy after accepted move: -141.586
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.5793
protocol.loops.LoopMover: energy after accepted move: -142.047
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 607 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 373284 bytes
protocol.loops.LoopMover: energy after design: -142.052
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -142.052 -143.691
protocol.loops.LoopMover: energy after repack: -142.052
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 21/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.6584
protocol.loops.LoopMover: energy after accepted move: -141.01
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.5909
protocol.loops.LoopMover: energy after accepted move: -140.75
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 22/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.5829
protocol.loops.LoopMover: energy after accepted move: -140.847
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 23/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.5847
protocol.loops.LoopMover: energy after accepted move: -140.742
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 24/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.5183
protocol.loops.LoopMover: energy after accepted move: -142.379
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 25/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.6119
protocol.loops.LoopMover: energy after accepted move: -141.822
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 26/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4989
protocol.loops.LoopMover: energy after accepted move: -141.971
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 27/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.0758
protocol.loops.LoopMover: energy after accepted move: -141.888
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 28/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.953
protocol.loops.LoopMover: energy after accepted move: -142.11
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.9681
protocol.loops.LoopMover: energy after accepted move: -142.478
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 29/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 30/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.0103
protocol.loops.LoopMover: energy after accepted move: -141.758
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2168
protocol.loops.LoopMover: energy after accepted move: -142.501
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 31/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2153
protocol.loops.LoopMover: energy after accepted move: -142.545
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2225
protocol.loops.LoopMover: energy after accepted move: -142.559
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 32/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 33/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 34/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2197
protocol.loops.LoopMover: energy after accepted move: -142.06
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 35/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2323
protocol.loops.LoopMover: energy after accepted move: -141.415
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.3204
protocol.loops.LoopMover: energy after accepted move: -142.149
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 36/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.3603
protocol.loops.LoopMover: energy after accepted move: -141.692
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 37/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.3604
protocol.loops.LoopMover: energy after accepted move: -142.067
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 38/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.3791
protocol.loops.LoopMover: energy after accepted move: -141.313
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 39/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.3783
protocol.loops.LoopMover: energy after accepted move: -142.012
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 40/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.3586
protocol.loops.LoopMover: energy after accepted move: -141.836
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.362
protocol.loops.LoopMover: energy after accepted move: -140.927
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 620 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 383484 bytes
protocol.loops.LoopMover: energy after design: -140.927
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -140.927 -143.691
protocol.loops.LoopMover: energy after repack: -140.927
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 41/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.3588
protocol.loops.LoopMover: energy after accepted move: -141.521
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.3648
protocol.loops.LoopMover: energy after accepted move: -141.253
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 42/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.7504
protocol.loops.LoopMover: energy after accepted move: -140.764
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 43/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.6596
protocol.loops.LoopMover: energy after accepted move: -141.314
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.6576
protocol.loops.LoopMover: energy after accepted move: -141.362
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 44/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.6613
protocol.loops.LoopMover: energy after accepted move: -140.549
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 45/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 46/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.6456
protocol.loops.LoopMover: energy after accepted move: -140.929
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 47/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 48/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.6222
protocol.loops.LoopMover: energy after accepted move: -141.491
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 49/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.6184
protocol.loops.LoopMover: energy after accepted move: -141.528
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.6181
protocol.loops.LoopMover: energy after accepted move: -141.547
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 50/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.7206
protocol.loops.LoopMover: energy after accepted move: -141.054
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.5225
protocol.loops.LoopMover: energy after accepted move: -141.415
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 51/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.52
protocol.loops.LoopMover: energy after accepted move: -141.368
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.3348
protocol.loops.LoopMover: energy after accepted move: -139.99
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 52/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.3484
protocol.loops.LoopMover: energy after accepted move: -140.4
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2623
protocol.loops.LoopMover: energy after accepted move: -136.907
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 53/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2877
protocol.loops.LoopMover: energy after accepted move: -139.613
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 54/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.0262
protocol.loops.LoopMover: energy after accepted move: -142.952
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 55/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.0252
protocol.loops.LoopMover: energy after accepted move: -142.944
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 56/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 25.9958
protocol.loops.LoopMover: energy after accepted move: -141.869
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 57/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.2246
protocol.loops.LoopMover: energy after accepted move: -142.354
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 58/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.2273
protocol.loops.LoopMover: energy after accepted move: -142.61
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.3682
protocol.loops.LoopMover: energy after accepted move: -142.01
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 59/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3907
protocol.loops.LoopMover: energy after accepted move: -141.826
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.3731
protocol.loops.LoopMover: energy after accepted move: -140.681
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 60/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4938
protocol.loops.LoopMover: energy after accepted move: -143.053
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6466
protocol.loops.LoopMover: energy after accepted move: -142.893
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 759 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 540844 bytes
protocol.loops.LoopMover: energy after design: -142.893
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -142.893 -143.691
protocol.loops.LoopMover: energy after repack: -142.893
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 61/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6474
protocol.loops.LoopMover: energy after accepted move: -142.866
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 62/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6463
protocol.loops.LoopMover: energy after accepted move: -142.993
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 63/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6495
protocol.loops.LoopMover: energy after accepted move: -143.291
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 64/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6683
protocol.loops.LoopMover: energy after accepted move: -142.558
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 65/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4952
protocol.loops.LoopMover: energy after accepted move: -142.976
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 66/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.9166
protocol.loops.LoopMover: energy after accepted move: -136.98
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 67/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.9363
protocol.loops.LoopMover: energy after accepted move: -136.716
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.9214
protocol.loops.LoopMover: energy after accepted move: -136.518
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 68/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.9372
protocol.loops.LoopMover: energy after accepted move: -137.109
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 69/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 70/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 71/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 72/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.9718
protocol.loops.LoopMover: energy after accepted move: -136.996
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 73/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 74/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.9629
protocol.loops.LoopMover: energy after accepted move: -137.004
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.9637
protocol.loops.LoopMover: energy after accepted move: -137.456
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 75/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 76/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.9568
protocol.loops.LoopMover: energy after accepted move: -137.205
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 77/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.7229
protocol.loops.LoopMover: energy after accepted move: -138.214
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 78/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.7317
protocol.loops.LoopMover: energy after accepted move: -138.304
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 79/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.7526
protocol.loops.LoopMover: energy after accepted move: -137.668
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 80/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.7546
protocol.loops.LoopMover: energy after accepted move: -138.201
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 569 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 329260 bytes
protocol.loops.LoopMover: energy after design: -138.281
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -138.281 -143.691
protocol.loops.LoopMover: energy after repack: -138.281
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 81/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.755
protocol.loops.LoopMover: energy after accepted move: -138.225
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 82/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.75
protocol.loops.LoopMover: energy after accepted move: -138.243
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 83/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.8711
protocol.loops.LoopMover: energy after accepted move: -138.261
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 84/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.8412
protocol.loops.LoopMover: energy after accepted move: -136.917
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 85/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.8244
protocol.loops.LoopMover: energy after accepted move: -137.261
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.7084
protocol.loops.LoopMover: energy after accepted move: -137.475
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 86/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.7109
protocol.loops.LoopMover: energy after accepted move: -137.346
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 87/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.7599
protocol.loops.LoopMover: energy after accepted move: -136.016
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 88/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.9189
protocol.loops.LoopMover: energy after accepted move: -136.543
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 89/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.9226
protocol.loops.LoopMover: energy after accepted move: -136.763
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 90/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.9159
protocol.loops.LoopMover: energy after accepted move: -136.949
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 91/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 25.6797
protocol.loops.LoopMover: energy after accepted move: -138.183
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 92/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 25.6852
protocol.loops.LoopMover: energy after accepted move: -137.962
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 93/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 25.6806
protocol.loops.LoopMover: energy after accepted move: -138.392
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 94/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 25.6722
protocol.loops.LoopMover: energy after accepted move: -138.448
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 95/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 25.678
protocol.loops.LoopMover: energy after accepted move: -137.684
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 96/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 25.6731
protocol.loops.LoopMover: energy after accepted move: -137.766
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 97/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 25.693
protocol.loops.LoopMover: energy after accepted move: -137.258
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.0432
protocol.loops.LoopMover: energy after accepted move: -136.347
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 98/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.095
protocol.loops.LoopMover: energy after accepted move: -136.479
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 99/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.0924
protocol.loops.LoopMover: energy after accepted move: -136.576
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.036
protocol.loops.LoopMover: energy after accepted move: -137.044
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 100/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.023
protocol.loops.LoopMover: energy after accepted move: -137.434
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 528 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 291844 bytes
protocol.loops.LoopMover: energy after design: -137.479
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -137.479 -143.691
protocol.loops.LoopMover: energy after repack: -137.479
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 101/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.0251
protocol.loops.LoopMover: energy after accepted move: -137.526
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.186
protocol.loops.LoopMover: energy after accepted move: -135.814
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 102/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.1984
protocol.loops.LoopMover: energy after accepted move: -135.715
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.9224
protocol.loops.LoopMover: energy after accepted move: -135.891
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 103/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 104/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.9127
protocol.loops.LoopMover: energy after accepted move: -135.952
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.8588
protocol.loops.LoopMover: energy after accepted move: -136.152
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 105/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.795
protocol.loops.LoopMover: energy after accepted move: -136.024
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.8138
protocol.loops.LoopMover: energy after accepted move: -137.076
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 106/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.817
protocol.loops.LoopMover: energy after accepted move: -136.91
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 107/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 24.874
protocol.loops.LoopMover: energy after accepted move: -136.777
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 108/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 24.8951
protocol.loops.LoopMover: energy after accepted move: -137.347
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 109/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 25.0358
protocol.loops.LoopMover: energy after accepted move: -137.111
protocol.loops.LoopMover: refinement cycle (outer/inner): 1/3 110/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 25.0363
protocol.loops.LoopMover: energy after accepted move: -137.005
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 575 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 338496 bytes
protocol.loops.LoopMover: energy after design: -137.005
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -137.005 -143.691
protocol.loops.LoopMover: energy after repack: -137.005
protocol.loops.LoopMover: cycle: 2  -143.597
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 1/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 2/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 3/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5968
protocol.loops.LoopMover: energy after accepted move: -143.808
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 4/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5927
protocol.loops.LoopMover: energy after accepted move: -143.415
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 5/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6244
protocol.loops.LoopMover: energy after accepted move: -142.998
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6731
protocol.loops.LoopMover: energy after accepted move: -142.227
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 6/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6546
protocol.loops.LoopMover: energy after accepted move: -142.363
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 7/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5814
protocol.loops.LoopMover: energy after accepted move: -142.971
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 8/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6009
protocol.loops.LoopMover: energy after accepted move: -142.648
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5991
protocol.loops.LoopMover: energy after accepted move: -142.681
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 9/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5944
protocol.loops.LoopMover: energy after accepted move: -142.596
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4817
protocol.loops.LoopMover: energy after accepted move: -143.212
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 10/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 11/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5443
protocol.loops.LoopMover: energy after accepted move: -142.91
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 12/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5365
protocol.loops.LoopMover: energy after accepted move: -142.786
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5462
protocol.loops.LoopMover: energy after accepted move: -142.764
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 13/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 14/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5374
protocol.loops.LoopMover: energy after accepted move: -142.419
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 15/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5468
protocol.loops.LoopMover: energy after accepted move: -142.789
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 16/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 17/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5449
protocol.loops.LoopMover: energy after accepted move: -142.839
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 18/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5409
protocol.loops.LoopMover: energy after accepted move: -142.48
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5412
protocol.loops.LoopMover: energy after accepted move: -142.737
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 19/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5438
protocol.loops.LoopMover: energy after accepted move: -142.693
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5407
protocol.loops.LoopMover: energy after accepted move: -142.58
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 20/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5393
protocol.loops.LoopMover: energy after accepted move: -142.616
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 594 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 368104 bytes
protocol.loops.LoopMover: energy after design: -142.616
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -142.616 -143.808
protocol.loops.LoopMover: energy after repack: -142.616
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 21/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5449
protocol.loops.LoopMover: energy after accepted move: -142.561
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 22/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5475
protocol.loops.LoopMover: energy after accepted move: -142.782
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 23/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 24/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 25/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.553
protocol.loops.LoopMover: energy after accepted move: -142.805
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 26/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5642
protocol.loops.LoopMover: energy after accepted move: -142.051
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5695
protocol.loops.LoopMover: energy after accepted move: -141.746
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 27/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5693
protocol.loops.LoopMover: energy after accepted move: -141.935
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5727
protocol.loops.LoopMover: energy after accepted move: -141.841
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 28/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.574
protocol.loops.LoopMover: energy after accepted move: -141.631
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 29/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6327
protocol.loops.LoopMover: energy after accepted move: -143.36
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 30/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5429
protocol.loops.LoopMover: energy after accepted move: -143.703
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 31/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 32/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5671
protocol.loops.LoopMover: energy after accepted move: -143.806
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 33/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5337
protocol.loops.LoopMover: energy after accepted move: -142.572
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5312
protocol.loops.LoopMover: energy after accepted move: -142.401
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 34/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.0084
protocol.loops.LoopMover: energy after accepted move: -142.191
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.7452
protocol.loops.LoopMover: energy after accepted move: -142.736
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 35/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.7269
protocol.loops.LoopMover: energy after accepted move: -142.933
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.66
protocol.loops.LoopMover: energy after accepted move: -143.321
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 36/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 37/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.618
protocol.loops.LoopMover: energy after accepted move: -142.87
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6604
protocol.loops.LoopMover: energy after accepted move: -142.241
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 38/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6069
protocol.loops.LoopMover: energy after accepted move: -142.222
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6553
protocol.loops.LoopMover: energy after accepted move: -141.844
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 39/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6539
protocol.loops.LoopMover: energy after accepted move: -141.786
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 40/110 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 759 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 539828 bytes
protocol.loops.LoopMover: energy after design: -141.786
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -141.786 -143.808
protocol.loops.LoopMover: energy after repack: -141.786
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 41/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.65
protocol.loops.LoopMover: energy after accepted move: -141.974
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6405
protocol.loops.LoopMover: energy after accepted move: -142.652
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 42/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6435
protocol.loops.LoopMover: energy after accepted move: -142.834
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.764
protocol.loops.LoopMover: energy after accepted move: -143.776
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 43/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.7718
protocol.loops.LoopMover: energy after accepted move: -143.517
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 44/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 45/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.8135
protocol.loops.LoopMover: energy after accepted move: -143.647
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.8481
protocol.loops.LoopMover: energy after accepted move: -143.226
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 46/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.8574
protocol.loops.LoopMover: energy after accepted move: -143.284
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 47/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.8484
protocol.loops.LoopMover: energy after accepted move: -142.341
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.8532
protocol.loops.LoopMover: energy after accepted move: -142.436
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 48/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 49/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.8441
protocol.loops.LoopMover: energy after accepted move: -142.466
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 50/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.7595
protocol.loops.LoopMover: energy after accepted move: -141.935
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 51/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.7054
protocol.loops.LoopMover: energy after accepted move: -142.324
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.7062
protocol.loops.LoopMover: energy after accepted move: -142.76
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 52/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.7033
protocol.loops.LoopMover: energy after accepted move: -142.928
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 53/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 54/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.7874
protocol.loops.LoopMover: energy after accepted move: -141.673
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 55/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.791
protocol.loops.LoopMover: energy after accepted move: -141.774
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.1115
protocol.loops.LoopMover: energy after accepted move: -140.614
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 56/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.1126
protocol.loops.LoopMover: energy after accepted move: -140.479
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.4656
protocol.loops.LoopMover: energy after accepted move: -140.132
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 57/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4627
protocol.loops.LoopMover: energy after accepted move: -140.76
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 58/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4711
protocol.loops.LoopMover: energy after accepted move: -140.632
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.4592
protocol.loops.LoopMover: energy after accepted move: -140.852
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 59/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4657
protocol.loops.LoopMover: energy after accepted move: -140.863
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 60/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4681
protocol.loops.LoopMover: energy after accepted move: -140.61
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.5476
protocol.loops.LoopMover: energy after accepted move: -140.421
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 603 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 370292 bytes
protocol.loops.LoopMover: energy after design: -140.585
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -140.585 -143.808
protocol.loops.LoopMover: energy after repack: -140.585
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 61/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2198
protocol.loops.LoopMover: energy after accepted move: -142.388
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2237
protocol.loops.LoopMover: energy after accepted move: -142.319
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 62/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 63/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.4574
protocol.loops.LoopMover: energy after accepted move: -142.588
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 64/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 65/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4565
protocol.loops.LoopMover: energy after accepted move: -142.472
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2893
protocol.loops.LoopMover: energy after accepted move: -142.49
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 66/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 67/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.3004
protocol.loops.LoopMover: energy after accepted move: -142.376
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2977
protocol.loops.LoopMover: energy after accepted move: -142.374
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 68/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2985
protocol.loops.LoopMover: energy after accepted move: -142.339
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.3059
protocol.loops.LoopMover: energy after accepted move: -142.299
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 69/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2812
protocol.loops.LoopMover: energy after accepted move: -142.327
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 70/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2827
protocol.loops.LoopMover: energy after accepted move: -142.396
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.4031
protocol.loops.LoopMover: energy after accepted move: -142.453
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 71/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2661
protocol.loops.LoopMover: energy after accepted move: -141.86
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2606
protocol.loops.LoopMover: energy after accepted move: -141.961
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 72/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 73/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2601
protocol.loops.LoopMover: energy after accepted move: -141.897
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2586
protocol.loops.LoopMover: energy after accepted move: -141.01
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 74/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2596
protocol.loops.LoopMover: energy after accepted move: -141.138
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2599
protocol.loops.LoopMover: energy after accepted move: -141.209
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 75/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.2622
protocol.loops.LoopMover: energy after accepted move: -141.297
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 76/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.2735
protocol.loops.LoopMover: energy after accepted move: -141.28
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 77/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4109
protocol.loops.LoopMover: energy after accepted move: -141.657
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 78/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4125
protocol.loops.LoopMover: energy after accepted move: -141.68
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.3798
protocol.loops.LoopMover: energy after accepted move: -141.149
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 79/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.3917
protocol.loops.LoopMover: energy after accepted move: -141.892
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.3912
protocol.loops.LoopMover: energy after accepted move: -141.748
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 80/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.3959
protocol.loops.LoopMover: energy after accepted move: -141.697
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 611 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 379704 bytes
protocol.loops.LoopMover: energy after design: -141.697
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -141.697 -143.808
protocol.loops.LoopMover: energy after repack: -141.697
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 81/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 82/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4171
protocol.loops.LoopMover: energy after accepted move: -141.511
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 83/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 84/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4387
protocol.loops.LoopMover: energy after accepted move: -142.287
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.4544
protocol.loops.LoopMover: energy after accepted move: -142.413
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 85/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.5124
protocol.loops.LoopMover: energy after accepted move: -142.055
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 86/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 87/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 88/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 89/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 90/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 91/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 92/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.0825
protocol.loops.LoopMover: energy after accepted move: -141.632
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 93/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 94/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.1692
protocol.loops.LoopMover: energy after accepted move: -142.27
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 95/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.1678
protocol.loops.LoopMover: energy after accepted move: -142.191
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 96/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.0942
protocol.loops.LoopMover: energy after accepted move: -142.029
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.9499
protocol.loops.LoopMover: energy after accepted move: -141.243
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 97/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.974
protocol.loops.LoopMover: energy after accepted move: -140.784
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.1585
protocol.loops.LoopMover: energy after accepted move: -141.567
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 98/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.1335
protocol.loops.LoopMover: energy after accepted move: -141.328
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 99/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 100/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.9146
protocol.loops.LoopMover: energy after accepted move: -142.169
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.9763
protocol.loops.LoopMover: energy after accepted move: -141.126
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 614 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 381632 bytes
protocol.loops.LoopMover: energy after design: -141.126
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -141.126 -143.808
protocol.loops.LoopMover: energy after repack: -141.126
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 101/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.9811
protocol.loops.LoopMover: energy after accepted move: -141.248
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.9786
protocol.loops.LoopMover: energy after accepted move: -141.278
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 102/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.035
protocol.loops.LoopMover: energy after accepted move: -140.612
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 103/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.054
protocol.loops.LoopMover: energy after accepted move: -142.097
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 104/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.1599
protocol.loops.LoopMover: energy after accepted move: -142.236
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 27.1735
protocol.loops.LoopMover: energy after accepted move: -142.266
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 105/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.1739
protocol.loops.LoopMover: energy after accepted move: -142.215
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 106/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 107/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 108/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4331
protocol.loops.LoopMover: energy after accepted move: -142.084
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 109/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.4124
protocol.loops.LoopMover: energy after accepted move: -141.225
protocol.loops.LoopMover: refinement cycle (outer/inner): 2/3 110/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 27.3588
protocol.loops.LoopMover: energy after accepted move: -141.631
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 616 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 383212 bytes
protocol.loops.LoopMover: energy after design: -141.473
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -141.473 -143.808
protocol.loops.LoopMover: energy after repack: -141.473
protocol.loops.LoopMover: cycle: 3  -143.63
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 1/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 2/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 3/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5882
protocol.loops.LoopMover: energy after accepted move: -143.605
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 4/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 5/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4576
protocol.loops.LoopMover: energy after accepted move: -143.301
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4781
protocol.loops.LoopMover: energy after accepted move: -143.219
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 6/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 7/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4858
protocol.loops.LoopMover: energy after accepted move: -143.303
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 8/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4765
protocol.loops.LoopMover: energy after accepted move: -143.088
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.424
protocol.loops.LoopMover: energy after accepted move: -143.859
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 9/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4211
protocol.loops.LoopMover: energy after accepted move: -143.882
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 10/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 11/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4456
protocol.loops.LoopMover: energy after accepted move: -143.651
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 12/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.45
protocol.loops.LoopMover: energy after accepted move: -143.46
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4888
protocol.loops.LoopMover: energy after accepted move: -143.353
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 13/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.2053
protocol.loops.LoopMover: energy after accepted move: -142.857
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 14/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.2204
protocol.loops.LoopMover: energy after accepted move: -142.36
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 15/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4492
protocol.loops.LoopMover: energy after accepted move: -143.733
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5628
protocol.loops.LoopMover: energy after accepted move: -143.384
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 16/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.551
protocol.loops.LoopMover: energy after accepted move: -143.173
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4414
protocol.loops.LoopMover: energy after accepted move: -143.87
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 17/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4493
protocol.loops.LoopMover: energy after accepted move: -143.613
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4441
protocol.loops.LoopMover: energy after accepted move: -143.781
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 18/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4372
protocol.loops.LoopMover: energy after accepted move: -143.858
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 19/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.1065
protocol.loops.LoopMover: energy after accepted move: -142.18
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 20/110 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 740 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 510000 bytes
protocol.loops.LoopMover: energy after design: -142.193
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -142.193 -143.882
protocol.loops.LoopMover: energy after repack: -142.193
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 21/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4998
protocol.loops.LoopMover: energy after accepted move: -142.218
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 22/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6021
protocol.loops.LoopMover: energy after accepted move: -141.576
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6139
protocol.loops.LoopMover: energy after accepted move: -141.58
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 23/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5598
protocol.loops.LoopMover: energy after accepted move: -142.179
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 24/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6436
protocol.loops.LoopMover: energy after accepted move: -139.48
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 25/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6664
protocol.loops.LoopMover: energy after accepted move: -139.692
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6417
protocol.loops.LoopMover: energy after accepted move: -142.641
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 26/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6487
protocol.loops.LoopMover: energy after accepted move: -142.377
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.677
protocol.loops.LoopMover: energy after accepted move: -141.938
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 27/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6118
protocol.loops.LoopMover: energy after accepted move: -142.282
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 28/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.6132
protocol.loops.LoopMover: energy after accepted move: -142.069
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5983
protocol.loops.LoopMover: energy after accepted move: -142.365
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 29/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.6012
protocol.loops.LoopMover: energy after accepted move: -142.155
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 30/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5205
protocol.loops.LoopMover: energy after accepted move: -142.036
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 31/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5207
protocol.loops.LoopMover: energy after accepted move: -142.337
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 32/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4856
protocol.loops.LoopMover: energy after accepted move: -142.418
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 33/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 34/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4852
protocol.loops.LoopMover: energy after accepted move: -142.129
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 35/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4256
protocol.loops.LoopMover: energy after accepted move: -142.847
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 36/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.2157
protocol.loops.LoopMover: energy after accepted move: -142.884
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 37/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.2151
protocol.loops.LoopMover: energy after accepted move: -142.934
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 38/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.218
protocol.loops.LoopMover: energy after accepted move: -142.987
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 39/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.2079
protocol.loops.LoopMover: energy after accepted move: -142.943
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 40/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.2094
protocol.loops.LoopMover: energy after accepted move: -142.97
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.208
protocol.loops.LoopMover: energy after accepted move: -142.917
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 725 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 489628 bytes
protocol.loops.LoopMover: energy after design: -142.917
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -142.917 -143.882
protocol.loops.LoopMover: energy after repack: -142.917
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 41/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4581
protocol.loops.LoopMover: energy after accepted move: -143.326
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4722
protocol.loops.LoopMover: energy after accepted move: -143.449
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 42/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 43/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4643
protocol.loops.LoopMover: energy after accepted move: -143.473
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 44/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5253
protocol.loops.LoopMover: energy after accepted move: -143.364
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5114
protocol.loops.LoopMover: energy after accepted move: -142.796
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 45/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 46/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 47/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5125
protocol.loops.LoopMover: energy after accepted move: -143.232
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 48/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5151
protocol.loops.LoopMover: energy after accepted move: -143.263
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 49/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5178
protocol.loops.LoopMover: energy after accepted move: -143.008
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4725
protocol.loops.LoopMover: energy after accepted move: -142.192
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 50/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.0079
protocol.loops.LoopMover: energy after accepted move: -142.049
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 51/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3062
protocol.loops.LoopMover: energy after accepted move: -143.137
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 52/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.2948
protocol.loops.LoopMover: energy after accepted move: -143.094
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 53/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.3059
protocol.loops.LoopMover: energy after accepted move: -142.509
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 54/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3031
protocol.loops.LoopMover: energy after accepted move: -142.306
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.3109
protocol.loops.LoopMover: energy after accepted move: -142.339
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 55/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.3066
protocol.loops.LoopMover: energy after accepted move: -142.384
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 56/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.2906
protocol.loops.LoopMover: energy after accepted move: -142.629
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 57/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.2865
protocol.loops.LoopMover: energy after accepted move: -142.782
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 58/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.2881
protocol.loops.LoopMover: energy after accepted move: -142.954
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 59/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.2804
protocol.loops.LoopMover: energy after accepted move: -142.949
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 60/110 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 740 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 510580 bytes
protocol.loops.LoopMover: energy after design: -142.952
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -142.952 -143.882
protocol.loops.LoopMover: energy after repack: -142.952
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 61/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3889
protocol.loops.LoopMover: energy after accepted move: -142.975
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 62/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3644
protocol.loops.LoopMover: energy after accepted move: -142.619
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.3448
protocol.loops.LoopMover: energy after accepted move: -142.539
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 63/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3612
protocol.loops.LoopMover: energy after accepted move: -142.734
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 64/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 65/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.524
protocol.loops.LoopMover: energy after accepted move: -143.117
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.5016
protocol.loops.LoopMover: energy after accepted move: -143.207
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 66/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 67/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4676
protocol.loops.LoopMover: energy after accepted move: -142.624
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.494
protocol.loops.LoopMover: energy after accepted move: -142.543
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 68/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4342
protocol.loops.LoopMover: energy after accepted move: -143.156
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4299
protocol.loops.LoopMover: energy after accepted move: -143.294
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 69/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4323
protocol.loops.LoopMover: energy after accepted move: -143.329
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 70/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 71/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4382
protocol.loops.LoopMover: energy after accepted move: -143.344
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 72/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4531
protocol.loops.LoopMover: energy after accepted move: -143.343
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.3957
protocol.loops.LoopMover: energy after accepted move: -143.284
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 73/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3785
protocol.loops.LoopMover: energy after accepted move: -143.465
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.3731
protocol.loops.LoopMover: energy after accepted move: -142.864
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 74/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3723
protocol.loops.LoopMover: energy after accepted move: -142.608
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 75/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4066
protocol.loops.LoopMover: energy after accepted move: -143.148
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 76/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4034
protocol.loops.LoopMover: energy after accepted move: -143.414
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 77/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.3948
protocol.loops.LoopMover: energy after accepted move: -143.58
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.3739
protocol.loops.LoopMover: energy after accepted move: -143.753
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 78/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4841
protocol.loops.LoopMover: energy after accepted move: -143.136
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 79/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4776
protocol.loops.LoopMover: energy after accepted move: -144.092
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 80/110 
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 740 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 509784 bytes
protocol.loops.LoopMover: energy after design: -144.097
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -144.097 -144.097
protocol.loops.LoopMover: energy after repack: -144.097
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 81/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4835
protocol.loops.LoopMover: energy after accepted move: -143.823
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 82/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4793
protocol.loops.LoopMover: energy after accepted move: -143.881
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4694
protocol.loops.LoopMover: energy after accepted move: -143.73
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 83/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4725
protocol.loops.LoopMover: energy after accepted move: -143.958
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 84/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 85/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4613
protocol.loops.LoopMover: energy after accepted move: -143.83
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4646
protocol.loops.LoopMover: energy after accepted move: -143.783
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 86/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4638
protocol.loops.LoopMover: energy after accepted move: -143.801
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 87/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4519
protocol.loops.LoopMover: energy after accepted move: -143.709
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 88/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 89/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4539
protocol.loops.LoopMover: energy after accepted move: -143.744
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4486
protocol.loops.LoopMover: energy after accepted move: -143.866
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 90/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 91/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4505
protocol.loops.LoopMover: energy after accepted move: -143.885
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 92/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4598
protocol.loops.LoopMover: energy after accepted move: -144.109
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 93/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 94/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 95/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 96/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4884
protocol.loops.LoopMover: energy after accepted move: -143.822
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 97/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 98/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4848
protocol.loops.LoopMover: energy after accepted move: -143.7
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 99/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4813
protocol.loops.LoopMover: energy after accepted move: -143.302
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 100/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4859
protocol.loops.LoopMover: energy after accepted move: -143.184
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4735
protocol.loops.LoopMover: energy after accepted move: -143.048
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 737 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 506968 bytes
protocol.loops.LoopMover: energy after design: -143.048
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -143.048 -144.109
protocol.loops.LoopMover: energy after repack: -143.048
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 101/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.4503
protocol.loops.LoopMover: energy after accepted move: -143.33
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 102/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 103/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 104/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4986
protocol.loops.LoopMover: energy after accepted move: -143.729
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 105/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 106/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 107/110 
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 108/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.4982
protocol.loops.LoopMover: energy after accepted move: -143.779
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 109/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5091
protocol.loops.LoopMover: energy after accepted move: -143.391
protocol.loops.LoopMover: RMS to native after accepted kinematic round 2 move on loop 1: 26.527
protocol.loops.LoopMover: energy after accepted move: -143.01
protocol.loops.LoopMover: refinement cycle (outer/inner): 3/3 110/110 
protocol.loops.LoopMover: RMS to native after accepted kinematic round 1 move on loop 1: 26.5282
protocol.loops.LoopMover: energy after accepted move: -143.003
core.pack.interaction_graph.interaction_graph_factory: Instantiating DensePDInteractionGraph
core.pack.pack_rotamers: built 756 rotamers at 37 positions.
core.pack.pack_rotamers: IG: 537440 bytes
protocol.loops.LoopMover: energy after design: -142.999
protocols.moves.MonteCarlo: MonteCarlo:: last_accepted_score,lowest_score: -142.999 -144.109
protocol.loops.LoopMover: energy after repack: -142.999
protocols.moves.MonteCarlo:    kic_refine_r1 trials=    295;  accepts= 0.6034;  energy_drop/trial=  -0.00162
protocols.moves.MonteCarlo:    kic_refine_r2 trials=    305;  accepts= 0.5934;  energy_drop/trial=   0.01378
protocols.moves.MonteCarlo:           repack trials=     19;  accepts= 1.0000;  energy_drop/trial=  -7.50308
protocols::checkpoint: Deleting checkpoints of LoopMover
protocols.looprelax: Refinetime: 97
protocols.looprelax: ====================================================================================
protocols.looprelax: ===
protocols.looprelax: ===  Getting Statistics 
protocols.looprelax: ===
protocols.looprelax: ===
protocols::checkpoint: Deleting checkpoints of Loopbuild
protocols::loopbuild: loop_cenrms: 0
protocols::loopbuild: loop_rms: 0
protocols::loopbuild: total_energy: -144.085
protocols::loopbuild: chainbreak: 0.00373256
