./scoring/weights/standard.wts
./chemical/atom_type_sets/fa_standard//atom_properties.txt
./chemical/element_sets/fa_standard/element_properties.txt
./chemical/atom_type_sets/fa_standard//extras.txt
./chemical/atom_type_sets/fa_standard//extras/sasa_radii.txt
./chemical/atom_type_sets/fa_standard//extras/soft_rep_params.txt
./chemical/atom_type_sets/fa_standard//extras/gen_born_params.txt
./chemical/atom_type_sets/fa_standard//extras/NACCESS_sasa_radii.txt
./chemical/atom_type_sets/fa_standard//extras/memb_fa_params.txt
./chemical/atom_type_sets/fa_standard//extras/std_charges.txt
./scoring/score_functions/PairEPotential/pdb_pair_stats_fine
./scoring/score_functions/hbonds/standard_params/HBAccChemType.csv
./scoring/score_functions/hbonds/standard_params/HBAccHybridization.csv
./scoring/score_functions/hbonds/standard_params/HBDonChemType.csv
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./scoring/score_functions/hbonds/standard_params/HBSeqSep.csv
./scoring/score_functions/hbonds/standard_params/HBondWeightType.csv
./scoring/score_functions/hbonds/standard_params/HybridizationType.csv
./scoring/score_functions/hbonds/standard_params/README.txt
./scoring/score_functions/hbonds/standard_params/schema.sql
./scoring/score_functions/EnvPairPotential/env_log.txt
./scoring/score_functions/MembranePotential/CEN10_Menv_smooth_log.txt
./scoring/score_functions/MembranePotential/CEN10_mem_env_log.txt
./scoring/score_functions/MembranePotential/CEN6_mem_env_log.txt
./chemical/residue_type_sets/coarse_two_bead/atom_properties_coarse.txt
./scoring/AtomVDW/atom_vdw.txt
./scoring/score_functions/SurfacePotential/average_hASA_by_res_and_neighbor.txt
./scoring/score_functions/EnvPairPotential/cbeta_den.txt
./scoring/score_functions/EnvPairPotential/cenpack_log.txt
./chemical/residue_type_sets/coarse_two_bead/coarse_rsd_list.txt
./scoring/score_functions/EnvPairPotential/env_log.txt
./scoring/score_functions/SurfacePotential/hpatch_score.txt
./scoring/score_functions/InterchainPotential/interchain_env_log.txt
./scoring/score_functions/InterchainPotential/interchain_pair_log.txt
./scoring/score_functions/DDPscore/interface_ddp_score.txt
./scoring/score_functions/MembranePotential/mem_env_log.txt
./scoring/score_functions/MembranePotential/mem_pair_log.txt
./scoring/score_functions/MembranePotential/memcbeta_den.txt
./orbitals_haro.txt
./orbitals_hpol.txt
./orbitals_orbitals.txt
./scoring/score_functions/EnvPairPotential/pair_log.txt
./scoring/score_functions/etable/resolve_etable.twobead.txt
./chemical/rna/rna_atom_vdw.txt
./scoring/score_functions/SurfacePotential/surface_score.txt
./scoring/score_functions/P_AA_pp/P_AA
./scoring/score_functions/P_AA_pp/P_AA_n
scoring/score_functions/P_AA_pp
./scoring/score_functions/custom_pair_distance/fa_custom_pair_distance
./scoring/score_functions/custom_pair_distance/neg_charge_repulsion
./scoring/score_functions/custom_pair_distance/pos_charge_repulsion
./scoring/score_functions/disulfides/centroid_CaCbCbCa_dihedral_score
./scoring/score_functions/disulfides/centroid_CaCbCb_angle_score
./scoring/score_functions/disulfides/centroid_backbone_dihedral_score
./scoring/score_functions/disulfides/centroid_distance_score
./scoring/score_functions/disulfides/fa_CaCbS_angle_score
./scoring/score_functions/disulfides/fa_CbSSCb_dihedral_score
./scoring/score_functions/disulfides/fa_SS_distance_score
./scoring/score_functions/hbonds/BBasSC_params/HBAccChemType.csv
./scoring/score_functions/hbonds/BBasSC_params/HBAccHybridization.csv
./scoring/score_functions/hbonds/BBasSC_params/HBDonChemType.csv
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./scoring/score_functions/hbonds/BBasSC_params/HBFadeIntervals.csv
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./scoring/score_functions/hbonds/BBasSC_params/HBondWeightType.csv
./scoring/score_functions/hbonds/BBasSC_params/HybridizationType.csv
./scoring/score_functions/hbonds/BBasSC_params/README.txt
./scoring/score_functions/hbonds/BBasSC_params/schema.sql
./scoring/score_functions/hbonds/His_Phil_fix/HBAccChemType.csv
./scoring/score_functions/hbonds/His_Phil_fix/HBAccHybridization.csv
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./scoring/score_functions/hbonds/correct_params/HBAccChemType.csv
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./scoring/score_functions/hbonds/correct_params/HBDonChemType.csv
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./scoring/score_functions/hbonds/correct_params/HybridizationType.csv
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./scoring/score_functions/hbonds/experimental_params/HBAccChemType.csv
./scoring/score_functions/hbonds/experimental_params/HBAccHybridization.csv
./scoring/score_functions/hbonds/experimental_params/HBDonChemType.csv
./scoring/score_functions/hbonds/experimental_params/HBEval.csv
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./scoring/score_functions/hbonds/experimental_params/HBondWeightType.csv
./scoring/score_functions/hbonds/experimental_params/HybridizationType.csv
./scoring/score_functions/hbonds/experimental_params/README.txt
./scoring/score_functions/hbonds/experimental_params/schema.sql
./scoring/score_functions/hbonds/helix_hb_06_2009/HBAccChemType.csv
./scoring/score_functions/hbonds/helix_hb_06_2009/HBAccHybridization.csv
./scoring/score_functions/hbonds/helix_hb_06_2009/HBDonChemType.csv
./scoring/score_functions/hbonds/helix_hb_06_2009/HBEval.csv
./scoring/score_functions/hbonds/helix_hb_06_2009/HBFadeIntervals.csv
./scoring/score_functions/hbonds/helix_hb_06_2009/HBPoly1D.csv
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./scoring/score_functions/hbonds/helix_hb_06_2009/HBondWeightType.csv
./scoring/score_functions/hbonds/helix_hb_06_2009/HybridizationType.csv
./scoring/score_functions/hbonds/helix_hb_06_2009/README.txt
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./scoring/score_functions/hbonds/newOH_params/HBAccChemType.csv
./scoring/score_functions/hbonds/newOH_params/HBAccHybridization.csv
./scoring/score_functions/hbonds/newOH_params/HBDonChemType.csv
./scoring/score_functions/hbonds/newOH_params/HBEval.csv
./scoring/score_functions/hbonds/newOH_params/HBFadeIntervals.csv
./scoring/score_functions/hbonds/newOH_params/HBPoly1D.csv
./scoring/score_functions/hbonds/newOH_params/HBSeqSep.csv
./scoring/score_functions/hbonds/newOH_params/HBondWeightType.csv
./scoring/score_functions/hbonds/newOH_params/HybridizationType.csv
./scoring/score_functions/hbonds/newOH_params/README.txt
./scoring/score_functions/hbonds/newOH_params/schema.sql
./scoring/score_functions/hbonds/standard_params/HBAccChemType.csv
./scoring/score_functions/hbonds/standard_params/HBAccHybridization.csv
./scoring/score_functions/hbonds/standard_params/HBDonChemType.csv
./scoring/score_functions/hbonds/standard_params/HBEval.csv
./scoring/score_functions/hbonds/standard_params/HBFadeIntervals.csv
./scoring/score_functions/hbonds/standard_params/HBPoly1D.csv
./scoring/score_functions/hbonds/standard_params/HBSeqSep.csv
./scoring/score_functions/hbonds/standard_params/HBondWeightType.csv
./scoring/score_functions/hbonds/standard_params/HybridizationType.csv
./scoring/score_functions/hbonds/standard_params/README.txt
./scoring/score_functions/hbonds/standard_params/schema.sql
./scoring/score_functions/saxs/ARG__CEN.ff
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./scoring/score_functions/saxs/ILE__CEN.ff
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./scoring/score_functions/saxs/MET__CEN.ff
./scoring/score_functions/saxs/N.ff
./scoring/score_functions/saxs/O.ff
./scoring/score_functions/saxs/PHE__CEN.ff
./scoring/score_functions/saxs/PRO__CEN.ff
./scoring/score_functions/saxs/SER__CEN.ff
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./scoring/score_functions/saxs/TYR__CEN.ff
./scoring/score_functions/saxs/VAL__CEN.ff
./scoring/score_functions/saxs/always_one.ff
./scoring/score_functions/saxs/ff-rosetta-cen.cfg
./scoring/score_functions/saxs/ff-rosetta-fa.cfg
./scoring/score_functions/saxs/ff-rosetta.cfg
./scoring/score_functions/unfolded/unfolded_state_residue_energies_mm_std
./scoring/score_functions/unfolded/unfolded_state_residue_energies_score12
./scoring/sucker/pusher.params
./scoring/sucker/sucker.params
./scoring/weights/allfold_soft_rep.wts
./scoring/weights/beta_soft_rep.wts
./scoring/weights/cen_std.wts
./scoring/weights/ddg.wts
./scoring/weights/ddg_monomer.wts
./scoring/weights/design_hpatch.wts
./scoring/weights/dna.wts
./scoring/weights/dna_gb.wts
./scoring/weights/dna_no_gb.wts
./scoring/weights/docking.wts
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./scoring/weights/fldsgn_cen.wts
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./scoring/weights/ligand.wts
./scoring/weights/ligand_gen_born.wts
./scoring/weights/ligand_soft_rep.wts
./scoring/weights/ligand_soft_rep_gen_born.wts
./scoring/weights/loop_fragsample.wts
./scoring/weights/membrane_highres.wts
./scoring/weights/membrane_highres_Menv_smooth.wts
./scoring/weights/mm_std.wts
./scoring/weights/occ_Hbond_sol_exact.wts_patch
./scoring/weights/occ_Hbond_sol_exact_env_dep.wts_patch
./scoring/weights/occ_Hbond_sol_fitted.wts_patch
./scoring/weights/opte.wts
./scoring/weights/remodel_cen.wts
./scoring/weights/rna_hires.wts
./scoring/weights/rna_lores.wts
./scoring/weights/rna_lores_plus_hires.wts
./scoring/weights/score0.wts
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./scoring/weights/score0_membrane.wts
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./scoring/weights/score12.wts_patch
./scoring/weights/score12_full.wts
./scoring/weights/score12_justdisulfides.wts
./scoring/weights/score12_unfolded.wts
./scoring/weights/score12_w_corrections.wts
./scoring/weights/score12_w_corrections.wts_patch
./scoring/weights/score13.wts
./scoring/weights/score13_env_hb.wts
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./scoring/weights/small_radii.wts
./scoring/weights/smooth_etable.wts
./scoring/weights/soft_rep.wts
./scoring/weights/soft_rep_design.wts
./scoring/weights/soft_rep_gen_born.wts
./scoring/weights/standard.wts
Rama_smooth_dyn.dat_ss_6.4
./chemical/atom_type_sets/centroid/atom_properties.txt
./chemical/atom_type_sets/centroid/atom_vdw.txt
./chemical/atom_type_sets/coarse_two_bead/atom_properties.txt
./chemical/atom_type_sets/fa_standard/atom_properties.txt
./chemical/atom_type_sets/fa_standard/atom_properties.txt.slim
./chemical/atom_type_sets/fa_standard/atom_properties.txt_0
./chemical/atom_type_sets/fa_standard/extras.txt
./chemical/atom_type_sets/fa_standard/extras/NACCESS_sasa_radii.txt
./chemical/atom_type_sets/fa_standard/extras/gen_born_params.txt
./chemical/atom_type_sets/fa_standard/extras/memb_fa_params.txt
./chemical/atom_type_sets/fa_standard/extras/reduce_sasa_radii.txt
./chemical/atom_type_sets/fa_standard/extras/sasa_radii.txt
./chemical/atom_type_sets/fa_standard/extras/soft_rep_params.txt
./chemical/atom_type_sets/fa_standard/extras/std_charges.txt
./chemical/atom_type_sets/fa_standard/occluded_hbond_solvation_params.acceptors.txt
./chemical/atom_type_sets/fa_standard/occluded_hbond_solvation_params.donors.txt
./chemical/csd_atom_type_sets/fa_standard/csd_atom_properties.txt
./chemical/mm_atom_type_sets/fa_standard/mm_atom_properties.txt
./chemical/mm_atom_type_sets/fa_standard/mm_torsion_params.txt
./chemical/mm_atom_type_sets/fa_standard/par_all27_prot_na.prm
./chemical/mm_atom_type_sets/fa_standard/top_all27_prot_na.rtf
./chemical/orbital_type_sets/fa_standard/orbital_properties.txt
./chemical/residue_type_sets/centroid/patches.txt
./chemical/residue_type_sets/centroid/patches.txt.slim
./chemical/residue_type_sets/centroid/patches/CtermProtein.txt
./chemical/residue_type_sets/centroid/patches/NtermProtein.txt
./chemical/residue_type_sets/centroid/patches/RepulsiveOnly_centroid.txt
./chemical/residue_type_sets/centroid/patches/ShoveBB.txt
./chemical/residue_type_sets/centroid/patches/VirtualBB.txt
./chemical/residue_type_sets/centroid/patches/VirtualNterm.txt
./chemical/residue_type_sets/centroid/patches/protein_centroid_with_HA.txt
./chemical/residue_type_sets/centroid/patches/protein_cutpoint_lower.txt
./chemical/residue_type_sets/centroid/patches/protein_cutpoint_upper.txt
./chemical/residue_type_sets/centroid/patches/tyr_sulfated.txt
./chemical/residue_type_sets/centroid/residue_types.txt
./chemical/residue_type_sets/centroid/residue_types/08A.params
./chemical/residue_type_sets/centroid/residue_types/08B.params
./chemical/residue_type_sets/centroid/residue_types/ALA.params
./chemical/residue_type_sets/centroid/residue_types/ARG.params
./chemical/residue_type_sets/centroid/residue_types/ASN.params
./chemical/residue_type_sets/centroid/residue_types/ASP.params
./chemical/residue_type_sets/centroid/residue_types/CYD.params
./chemical/residue_type_sets/centroid/residue_types/CYS.params
./chemical/residue_type_sets/centroid/residue_types/CYV.params
./chemical/residue_type_sets/centroid/residue_types/CYZ.params
./chemical/residue_type_sets/centroid/residue_types/GLN.params
./chemical/residue_type_sets/centroid/residue_types/GLU.params
./chemical/residue_type_sets/centroid/residue_types/GLY.params
./chemical/residue_type_sets/centroid/residue_types/HIS.params
./chemical/residue_type_sets/centroid/residue_types/HIS_D.params
./chemical/residue_type_sets/centroid/residue_types/ILE.params
./chemical/residue_type_sets/centroid/residue_types/LEU.params
./chemical/residue_type_sets/centroid/residue_types/LYS.params
./chemical/residue_type_sets/centroid/residue_types/MET.params
./chemical/residue_type_sets/centroid/residue_types/PHE.params
./chemical/residue_type_sets/centroid/residue_types/PRO.params
./chemical/residue_type_sets/centroid/residue_types/SER.params
./chemical/residue_type_sets/centroid/residue_types/THR.params
./chemical/residue_type_sets/centroid/residue_types/TRP.params
./chemical/residue_type_sets/centroid/residue_types/TYR.params
./chemical/residue_type_sets/centroid/residue_types/VAL.params
./chemical/residue_type_sets/centroid/residue_types/VRT.params
./chemical/residue_type_sets/centroid/residue_types/metal_ions/CA.params
./chemical/residue_type_sets/centroid/residue_types/metal_ions/CD.params
./chemical/residue_type_sets/centroid/residue_types/metal_ions/FE.params
./chemical/residue_type_sets/centroid/residue_types/metal_ions/FE2.params
./chemical/residue_type_sets/centroid/residue_types/metal_ions/K.params
./chemical/residue_type_sets/centroid/residue_types/metal_ions/MG.params
./chemical/residue_type_sets/centroid/residue_types/metal_ions/MN.params
./chemical/residue_type_sets/centroid/residue_types/metal_ions/NA.params
./chemical/residue_type_sets/centroid/residue_types/metal_ions/ZN.params
./chemical/residue_type_sets/coarse_two_bead/patches.txt
./chemical/residue_type_sets/coarse_two_bead/patches/CtermProteinFull.txt
./chemical/residue_type_sets/coarse_two_bead/patches/NtermProteinFull.txt
./chemical/residue_type_sets/coarse_two_bead/residue_types.txt
./chemical/residue_type_sets/coarse_two_bead/residue_types/ADE.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/ALA.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/ARG.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/ASN.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/ASP.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/CYS.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/CYT.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/GLN.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/GLU.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/GLY.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/GUA.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/HIS.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/HIS_D.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/ILE.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/LEU.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/LYS.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/MET.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/PHE.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/PRO.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/SER.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/THR.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/THY.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/TRP.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/TYR.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/VAL.params
./chemical/residue_type_sets/coarse_two_bead/residue_types/VRT.params
./chemical/residue_type_sets/fa_standard/patches.txt
./chemical/residue_type_sets/fa_standard/patches.txt.slim
./chemical/residue_type_sets/fa_standard/patches/ActeylatedProteinNterm.txt
./chemical/residue_type_sets/fa_standard/patches/C_methylamidated.txt
./chemical/residue_type_sets/fa_standard/patches/CtermConnect.txt
./chemical/residue_type_sets/fa_standard/patches/CtermProteinFull.txt
./chemical/residue_type_sets/fa_standard/patches/Cterm_amidation.txt
./chemical/residue_type_sets/fa_standard/patches/LowerDNA.txt
./chemical/residue_type_sets/fa_standard/patches/MethylatedProteinCterm.txt
./chemical/residue_type_sets/fa_standard/patches/N_acetylated.txt
./chemical/residue_type_sets/fa_standard/patches/NtermProteinFull.txt
./chemical/residue_type_sets/fa_standard/patches/RepulsiveOnly_fa.txt
./chemical/residue_type_sets/fa_standard/patches/ShoveBB.txt
./chemical/residue_type_sets/fa_standard/patches/SpecialRotamer.txt
./chemical/residue_type_sets/fa_standard/patches/UpperDNA.txt
./chemical/residue_type_sets/fa_standard/patches/VirtualBB.txt
./chemical/residue_type_sets/fa_standard/patches/VirtualDNAPhosphate.txt
./chemical/residue_type_sets/fa_standard/patches/VirtualNterm.txt
./chemical/residue_type_sets/fa_standard/patches/cys_acetylated.txt
./chemical/residue_type_sets/fa_standard/patches/glu_carboxylated.txt
./chemical/residue_type_sets/fa_standard/patches/his_methylated.txt
./chemical/residue_type_sets/fa_standard/patches/lys_acetylated.txt
./chemical/residue_type_sets/fa_standard/patches/lys_dimethylated.txt
./chemical/residue_type_sets/fa_standard/patches/lys_monomethylated.txt
./chemical/residue_type_sets/fa_standard/patches/lys_trimethylated.txt
./chemical/residue_type_sets/fa_standard/patches/pro_hydroxylated_case1.txt
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