-docking:view==Decide whether to use the viewer (graphical) or not. Default='false'. [Boolean]
-docking:fake_native==Decide whether to use low res docking filters after centroid mode. Default='false' [Boolean]
-docking:partners==Defines docking partners by ChainID. Example: docking chains L+H with A is -partners LH_A', Default='_'. [String]
-docking:docking_local_refine==Do a local refinement of the docking position(high resolution) Default='false'. [Boolean]
-docking:randomize1==Randomize the first docking partner.Default='false'[Boolean]
-docking:randomize2==Randomize the second docking partner.Default='false'[Boolean]
-docking:spin==Spin a second docking partner around axes from center of mass of partner1 to partner2. Default='false'. [Boolean]
-docking:dock_pert==Do a small perturbation with partner two: -dock_pert DEGREES ANGSTROMS. Good values for protein docking are 3 deg and 8 A.', n='2' [RealVector]
-docking:uniform_trans==Uniform random repositioning within a sphere of the given radius. [Real]
-docking:docking_centroid_outer_cycles==Outer cycles during docking rigid body adaptive moves. Default='10' [Integer]
-docking:docking_centroid_inner_cycles==Inner cycles during docking rigid body adaptive moves. Default='50' [Integer]
-docking:dock_mcm==Do a monte-carlo minimize search.Default='true'[Boolean]
-docking:dock_min==Minimize the final ��Ωfullatom structure.Default='false' [Boolean]
-docking:dock_mcm_trans_magnitude==The magnitude of the translational perturbation during mcm in docking. Default='0.1'. [Real]
-docking:dock_mcm_rot_magnitude==The magnitude of the rotational perturbation during mcm in docking. Default='5.0'. [Real]
-docking:norepack1==Do not repack the side-chains of partner 1. Default='false' [Boolean]
-docking:norepack2==Do not repack the side-chains of partner 2. Default='false' [Boolean]
-docking:dock_ppk==Docking prepack mode'. Default='false' [Boolean]
-docking:dock_lowres_filter==Manually sets the lowres docking filter:
-dock_lowres_filter==<INTERCHAIN_CONTACT CUTOFF> <INTERCHAIN_VDW CUTOFF>. Default values for protein docking are 10.0 and 1.0',n='2' [RealVector]
