-out:overwrite==Ignore 'CHECKPOINT' file and the overwrite the PDB file(s). [Boolean]
-out:nstruct==Number of times to process each input PDB", default="1" [Integer]
-out:prefix==Prefix for output structure names, like old -series code", Default="". [String]
-out:suffix==Suffix for output structure names Default="". [String]
-out:pdb_gz==Compress (gzip) output pdbs", default="false". [Boolean]
-out:pdb==Output PDBs", default="false". [Boolean]
-out:nooutput==Surpress outputfiles. Default="false". [Boolean]
-out:output==Force outputfiles. Default="false". [Boolean]
-out:show_accessed_options==At the end of the run show options that has been accessed Default="false". [Boolean]
-out:user_tag==Add this tag to structure tags: e.g., a process id. Default="". [String]
-mute==Mute specified chanels, specify 'all' to mute all chanels. Defaule="false" [StringVector]
-unmute==UnMute specified chanels. Default="false" [StringVector]
-unmute all==# unmute all channels - default behavior, the same as just './a.out'
-mute all -unmute ChannelA ChannelB==# mute all channels, unmute ChannelA and ChannelB
-mute ChannelA ChannelB==# mute ChannelA and  ChannelB
-out:level 10==# Set priority of output messages to be between 0 and 10
-chname off==# disable output of channels names
-out:file:o== Output file name. [String]
-out:file:silent==Use silent file output, use filename after this flag. Default="default.out" [String]
-out:file:scorefile==Write a scorefile to the provided filename. Default = "default.sc [String]
-out:file:fullatom==Enable full-atom output of PDB or centroid structures. Default = "fault" [Boolean]
-out:path:pdb==PDB file output path. [Path]
-out:path:score==Score file output path. [Path]
