-score:weights==Name of weights file (without extension .wts) Default="standard". [String]
-score:patch score12==Name of patch file (without extension) Default="". [String]
-score:dun08==Use the 2008 Dunbrack library instead of the 2002 library. [Boolean]
-score:dun10==Use the 2010 Dunbrack library [Boolean?]
-score:empty==Make an empty score - i.e. NO scoring. [Boolean]
-score:fa_max_dis==How far does the FA pair potential go out to. Default = 6.0. [Real]
-score:fa_Hatr==Turn on Lennard Jones attractive term for hydrogen atoms. [Boolean]
-score:no_smooth_etables==Revert to old style etables. [Boolean]
-score:etable_lr==Lowers energy well at 6.5A. [Real]
-score:input_etables==Read etables from files with given prefix. [String]
-score:output_etables==Write out etables to files with given prefix. [String]
-score:rms_target==Target of RMS optimization for RMS_Energy EnergyMethod. Default=0.0 [Real]
-score:ramaneighbors true==Uses neighbor-dependent ramachandran maps Default=false [Boolean]
-score:optH_weights==Name of weights file (without extension .wts) to use during optH. [String]
-score:optH_patch==Name of weights file (without extension .wts) to use during optH. [String]
