#include <RotamerRecoveryFeatures.hh>

Inheritance diagram for protocols::features::RotamerRecoveryFeatures:

Collaboration diagram for protocols::features::RotamerRecoveryFeatures:

Public Member Functions
	RotamerRecoveryFeatures ()

	RotamerRecoveryFeatures (core::scoring::ScoreFunctionOP scfxn)

	RotamerRecoveryFeatures (RotamerRecoveryFeatures const &src)

virtual	~RotamerRecoveryFeatures ()

std::string	type_name () const
	return string with class name More...

void	write_schema_to_db (utility::sql_database::sessionOP db_session) const
	generate the table schemas and write them to the database More...

utility::vector1< std::string >	features_reporter_dependencies () const
	return the set of features reporters that are required to also already be extracted by the time this one is used. More...

void	initialize_task_factory (core::pack::task::TaskFactoryOP task_factory)

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &movers, core::pose::Pose const &)

core::Size	report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	collect all the feature data for the pose More...

Public Member Functions inherited from protocols::features::FeaturesReporter
virtual	~FeaturesReporter ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...

virtual std::string	schema () const
	return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...

core::Size	report_features (core::pose::Pose const &, boost::uuids::uuid, utility::sql_database::sessionOP)
	collect all the feature data for the pose. More...

virtual void	load_into_pose (utility::sql_database::sessionOP, boost::uuids::uuid, core::pose::Pose &)

virtual void	delete_record (boost::uuids::uuid, utility::sql_database::sessionOP)

Private Attributes
core::scoring::ScoreFunctionOP	scfxn_

protocols::rotamer_recovery::RRProtocolOP	protocol_

protocols::rotamer_recovery::RRComparerOP	comparer_

core::pack::task::TaskFactoryOP	task_factory_

Additional Inherited Members
Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string	find_tag (core::pose::Pose const &pose) const

void	delete_records_from_table (std::string const &table_name, boost::uuids::uuid struct_id, utility::sql_database::sessionOP db_session)
	a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...

Detailed Description

Definition at line 48 of file RotamerRecoveryFeatures.hh.

Constructor & Destructor Documentation

protocols::features::RotamerRecoveryFeatures::RotamerRecoveryFeatures ( )

Definition at line 96 of file RotamerRecoveryFeatures.cc.

protocols::features::RotamerRecoveryFeatures::RotamerRecoveryFeatures ( core::scoring::ScoreFunctionOP scfxn)

protocols::features::RotamerRecoveryFeatures::RotamerRecoveryFeatures ( RotamerRecoveryFeatures const & src)

Definition at line 111 of file RotamerRecoveryFeatures.cc.

protocols::features::RotamerRecoveryFeatures::~RotamerRecoveryFeatures ( )

virtual

Definition at line 120 of file RotamerRecoveryFeatures.cc.

Member Function Documentation

vector1< string > protocols::features::RotamerRecoveryFeatures::features_reporter_dependencies ( ) const

virtual

return the set of features reporters that are required to also already be extracted by the time this one is used.

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 135 of file RotamerRecoveryFeatures.cc.

void protocols::features::RotamerRecoveryFeatures::initialize_task_factory ( core::pack::task::TaskFactoryOP task_factory)

Definition at line 142 of file RotamerRecoveryFeatures.cc.

References task_factory_.

void protocols::features::RotamerRecoveryFeatures::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	data,
		protocols::filters::Filters_map const &	,
		protocols::moves::Movers_map const &	movers,
		core::pose::Pose const &
	)

virtual

Reimplemented from protocols::features::FeaturesReporter.

Definition at line 149 of file RotamerRecoveryFeatures.cc.

References protocols::fldsgn::topology::compare(), comparer_, protocols::moves::DataMap::get(), protocols::rotamer_recovery::RotamerRecoveryFactory::get_instance(), protocols::rosetta_scripts::parse_mover(), protocols::rosetta_scripts::parse_task_operations(), protocol_, protocols::rosetta_scripts::saved_reference_pose(), scfxn_, protocols::rotamer_recovery::RRProtocolRTMin::set_cartesian(), protocols::rotamer_recovery::RRProtocolRTMin::set_nonideal(), and task_factory_.

Size protocols::features::RotamerRecoveryFeatures::report_features	(	core::pose::Pose const &	pose,
		utility::vector1< bool > const &	relevant_residues,
		boost::uuids::uuid	struct_id,
		utility::sql_database::sessionOP	db_session
	)