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Rosetta 3.5
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Rosetta 3.5
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#include <GenericJobInputter.hh>
Public Member Functions | |
| GenericJobInputter () | |
| virtual void | pose_from_job (core::pose::Pose &pose, protocols::jd2::JobOP job) |
| this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. More... | |
| virtual void | fill_jobs (protocols::jd2::Jobs &jobs) |
| this function determines what jobs exist More... | |
| virtual protocols::jd2::JobInputterInputSource::Enum | input_source () const |
| Return the type of input source that the GenericJobInputter is currently using. More... | |
 Public Member Functions inherited from protocols::jd2::JobInputter | |
| virtual | ~JobInputter () |
Additional Inherited Members | |
| Static Public Member Functions inherited from protocols::jd2::JobInputter | |
| static std::string | job_inputter_input_source_to_string (JobInputterInputSource::Enum source) |
| call this with input_source() to get the input source of a particular job inputter More... | |
| Protected Member Functions inherited from protocols::jd2::JobInputter | |
| void | load_pose_into_job (core::pose::Pose const &pose, JobOP job) |
| this function modifies the InnerJob's pose. Access to that pose is via friendship. More... | |
| void | load_pose_into_job (core::pose::PoseCOP pose, JobOP job) |
| this function modifies the InnerJob's pose. Access to that pose is via friendship. More... | |
| virtual core::Size | get_nstruct () const |
| this code is here to restrict the use of inner_job_nonconst (this class is a friend class and can do it) More... | |
This is the simplest implementation of JobInputter
Definition at line 35 of file GenericJobInputter.hh.
| protocols::comparative_modeling::GenericJobInputter::GenericJobInputter | ( | ) |
Definition at line 47 of file GenericJobInputter.cc.
References protocols::comparative_modeling::tr().
Referenced by protocols::comparative_modeling::GenericJobInputterCreator::create_JobInputter().
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this function determines what jobs exist
this function determines what jobs exist from -s/-l
Implements protocols::jd2::JobInputter.
Definition at line 84 of file GenericJobInputter.cc.
References protocols::jd2::JobInputter::get_nstruct(), and protocols::comparative_modeling::tr().
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Return the type of input source that the GenericJobInputter is currently using.
Implements protocols::jd2::JobInputter.
Definition at line 103 of file GenericJobInputter.cc.
References protocols::jd2::JobInputterInputSource::POSE.
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this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference.
This function will first see if the pose already exists in the Job. If not, it will read it into the pose reference, and hand a COP cloned from that pose to the Job. If the pose pre-exists it just copies the COP's pose into it. why does this code live in comparative_modeling?
Implements protocols::jd2::JobInputter.
Definition at line 56 of file GenericJobInputter.cc.
References core::pose::symmetry::is_symmetric(), core::pose::symmetry::make_asymmetric_pose(), core::sequence::read_fasta_file_str(), and protocols::comparative_modeling::tr().
1.8.4