| add_dna_states(Pose const &, PackerTaskCOP) | protocols::dna::DnaInterfaceMultiStateDesign | private |
| anchor_offset_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| apply(Pose &) | protocols::dna::DnaInterfaceMultiStateDesign | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| boltz_temp_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| checkpoint_gz_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| checkpoint_interval_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| checkpoint_prefix_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| checkpoint_rename_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::dna::DnaInterfaceMultiStateDesign | virtual |
| copy_dna_chains(DnaChainsOP) | protocols::dna::DnaInterfaceMultiStateDesign | |
| copy_targeted_dna(DnaDesignDefOPs const &) | protocols::dna::DnaInterfaceMultiStateDesign | |
| create() | protocols::moves::Mover | virtual |
| dna_chains_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| DnaInterfaceMultiStateDesign() | protocols::dna::DnaInterfaceMultiStateDesign | |
| Filters_map typedef | protocols::moves::Mover | |
| fraction_by_recombination_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| fresh_instance() const | protocols::dna::DnaInterfaceMultiStateDesign | virtual |
| gen_alg_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| generations_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| GeneticAlgorithmOP typedef | protocols::dna::DnaInterfaceMultiStateDesign | |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::dna::DnaInterfaceMultiStateDesign | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| ig() const | protocols::simple_moves::PackRotamersMover | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize(Pose &) | protocols::dna::DnaInterfaceMultiStateDesign | private |
| InteractionGraphBaseCOP typedef | protocols::simple_moves::PackRotamersMover | |
| InteractionGraphBaseOP typedef | protocols::simple_moves::PackRotamersMover | |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| multistate_packer_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| mutate_rate_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| name() | protocols::moves::Mover | inlinestatic |
| nloop(core::Size nloop_in) | protocols::simple_moves::PackRotamersMover | |
| nloop() const | protocols::simple_moves::PackRotamersMover | inline |
| note_packertask_settings(Pose const &) | protocols::simple_moves::PackRotamersMover | protectedvirtual |
| num_packs_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| numresults_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| operator=(Mover const &other) | protocols::moves::Mover | |
| output_results(Pose &) | protocols::dna::DnaInterfaceMultiStateDesign | |
| PackerTaskCOP typedef | protocols::dna::DnaInterfaceMultiStateDesign | |
| PackRotamersMover() | protocols::simple_moves::PackRotamersMover | |
| PackRotamersMover(std::string const &) | protocols::simple_moves::PackRotamersMover | |
| PackRotamersMover(ScoreFunctionCOP scorefxn, PackerTaskCOP task=0, core::Size nloop=1) | protocols::simple_moves::PackRotamersMover | |
| PackRotamersMover(PackRotamersMover const &other) | protocols::simple_moves::PackRotamersMover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, protocols::moves::MoverCacheSP cache) | protocols::simple_moves::PackRotamersMover | virtual |
| parse_my_tag(TagPtr const, moves::DataMap &, protocols::filters::Filters_map const &, moves::Movers_map const &, Pose const &) | protocols::dna::DnaInterfaceMultiStateDesign | virtual |
| parse_score_function(TagPtr const, protocols::moves::DataMap const &, Filters_map const &, protocols::moves::Movers_map const &, Pose const &) | protocols::simple_moves::PackRotamersMover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| parse_task_operations(TagPtr const, protocols::moves::DataMap const &, Filters_map const &, protocols::moves::Movers_map const &, Pose const &) | protocols::simple_moves::PackRotamersMover | virtual |
| pop_from_ss_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| pop_size_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| PosType typedef | protocols::dna::DnaInterfaceMultiStateDesign | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| rotamer_sets() const | protocols::simple_moves::PackRotamersMover | |
| RotamerSetsCOP typedef | protocols::simple_moves::PackRotamersMover | |
| RotamerSetsOP typedef | protocols::simple_moves::PackRotamersMover | |
| run() | protocols::dna::DnaInterfaceMultiStateDesign | private |
| protocols::simple_moves::PackRotamersMover::run(Pose &pose, utility::vector0< int > rot_to_pack=utility::vector0< int >()) const | protocols::simple_moves::PackRotamersMover | protectedvirtual |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| score_function(ScoreFunctionCOP sf) | protocols::simple_moves::PackRotamersMover | |
| score_function() const | protocols::simple_moves::PackRotamersMover | |
| ScoreFunctionCOP typedef | protocols::simple_moves::PackRotamersMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| setup(Pose &pose) | protocols::simple_moves::PackRotamersMover | protectedvirtual |
| Strings typedef | protocols::moves::Mover | |
| TagPtr typedef | protocols::moves::Mover | |
| targeted_dna_ | protocols::dna::DnaInterfaceMultiStateDesign | private |
| task(PackerTaskCOP t) | protocols::simple_moves::PackRotamersMover | |
| task() const | protocols::simple_moves::PackRotamersMover | |
| task_factory(TaskFactoryCOP tf) | protocols::simple_moves::PackRotamersMover | |
| task_factory() const | protocols::simple_moves::PackRotamersMover | |
| task_is_valid(Pose const &pose) const | protocols::simple_moves::PackRotamersMover | |
| TaskFactoryCOP typedef | protocols::simple_moves::PackRotamersMover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~DnaInterfaceMultiStateDesign() | protocols::dna::DnaInterfaceMultiStateDesign | virtual |
| ~Mover() | protocols::moves::Mover | virtual |
| ~PackRotamersMover() | protocols::simple_moves::PackRotamersMover | virtual |
1.8.4