protocols::toolbox::task_operations Namespace Reference

Classes
class	DesignAroundOperation
class	DesignAroundOperationCreator
class	InterfaceTaskOperation
class	JointSequenceOperation
class	JointSequenceOperationCreator
class	LayerOperations
class	LimitAromaChi2_RotamerSetOperation
class	LimitAromaChi2Operation
class	LimitAromaChi2OperationCreator
class	ModifyAnnealer
class	ModifyAnnealerCreator
class	PreventChainFromRepackingOperation
class	PreventChainFromRepackingOperationCreator
class	PreventResiduesFromRepackingOperation
class	PreventResiduesFromRepackingOperationCreator
class	ProteinCore
class	ProteinCoreFilterCreator
class	ProteinInterfaceDesignOperation
class	ProteinInterfaceDesignOperationCreator
class	ReadResfileFromDB
class	ReadResfileFromDBCreator
class	RestrictByCalculatorsOperation
class	RestrictByCalculatorsOperationCreator
class	RestrictChainToRepackingOperation
class	RestrictChainToRepackingOperationCreator
class	RestrictIdentitiesAtAlignedPositionsOperation
class	RestrictIdentitiesAtAlignedPositionsOperationCreator
class	RestrictInterGroupVectorOperation
class	RestrictInterGroupVectorOperationCreator
class	RestrictNativeResiduesOperation
class	RestrictNativeResiduesOperationCreator
class	RestrictNonSurfaceToRepackingOperation
class	RestrictNonSurfaceToRepackingOperationCreator
class	RestrictOperationsBase
class	RestrictResiduesToRepackingOperation
class	RestrictResiduesToRepackingOperationCreator
class	RestrictToAlignedSegmentsOperation
class	RestrictToAlignedSegmentsOperationCreator
class	RestrictToCDRH3Loop
class	RestrictToCDRH3LoopCreator
class	DockingNoRepack1
class	DockingNoRepack2
class	RestrictToInterface
class	RestrictToInterfaceCreator
class	RestrictToInterfaceOperation
class	RestrictToInterfaceOperationCreator
class	RestrictToInterfaceVectorOperation
class	RestrictToInterfaceVectorOperationCreator
class	RestrictToLoopsAndNeighbors
class	RestrictToLoopsAndNeighborsCreator
class	RestrictToNeighborhoodOperation
class	RestrictToNeighborhoodOperationCreator
class	RestrictToTerminiOperation
class	RestrictToTerminiOperationCreator
class	SelectBySASAOperation
class	SelectBySASAOperationCreator
class	SeqprofConsensusOperation
class	RestrictConservedLowDdgOperation
	a Task operation that will check whether the amino acid at a position is conserved in the sequence profile and has an unfavorable ddG when mutated to ala. all positions that match this criterion will get set to repacking. More...
class	SeqprofConsensusOperationCreator
class	RestrictConservedLowDdgOperationCreator
class	SetIGTypeOperation
class	SetIGTypeOperationCreator
class	ThreadSequenceOperation
class	ThreadSequenceOperationCreator

Typedefs
typedef utility::pointer::owning_ptr < DesignAroundOperation >	DesignAroundOperationOP
typedef utility::pointer::owning_ptr < DesignAroundOperation const >	DesignAroundOperationCOP
typedef utility::pointer::owning_ptr < InterfaceTaskOperation >	InterfaceTaskOperationOP
typedef utility::pointer::owning_ptr < InterfaceTaskOperation >	InterfaceTaskOperationCOP
typedef utility::pointer::owning_ptr < JointSequenceOperation >	JointSequenceOperationOP
typedef utility::pointer::owning_ptr < LimitAromaChi2_RotamerSetOperation >	LimitAromaChi2_RotamerSetOperationOP
typedef utility::pointer::owning_ptr < LimitAromaChi2_RotamerSetOperation const >	LimitAromaChi2_RotamerSetOperationCOP
typedef utility::pointer::owning_ptr < LimitAromaChi2Operation >	LimitAromaChi2OperationOP
typedef utility::pointer::owning_ptr < LimitAromaChi2Operation const >	LimitAromaChi2OperationCOP
typedef utility::pointer::owning_ptr < ModifyAnnealer >	ModifyAnnealerOP
typedef utility::pointer::owning_ptr < ModifyAnnealer const >	ModifyAnnealerCOP
typedef utility::pointer::owning_ptr < PreventChainFromRepackingOperation >	PreventChainFromRepackingOperationOP
typedef utility::pointer::owning_ptr < PreventChainFromRepackingOperation const >	PreventChainFromRepackingOperationCOP
typedef utility::pointer::owning_ptr < PreventResiduesFromRepackingOperation >	PreventResiduesFromRepackingOperationOP
typedef utility::pointer::owning_ptr < PreventResiduesFromRepackingOperation const >	PreventResiduesFromRepackingOperationCOP
typedef utility::pointer::owning_ptr < ProteinInterfaceDesignOperation >	ProteinInterfaceDesignOperationOP
typedef utility::pointer::owning_ptr < ProteinInterfaceDesignOperation const >	ProteinInterfaceDesignOperationCOP
typedef utility::pointer::owning_ptr < ReadResfileFromDB >	ReadResfileFromDBOP
typedef utility::pointer::owning_ptr < RestrictByCalculatorsOperation >	RestrictByCalculatorsOperationOP
typedef utility::pointer::owning_ptr < RestrictByCalculatorsOperation const >	RestrictByCalculatorsOperationCOP
typedef utility::pointer::owning_ptr < RestrictChainToRepackingOperation >	RestrictChainToRepackingOperationOP
typedef utility::pointer::owning_ptr < RestrictChainToRepackingOperation const >	RestrictChainToRepackingOperationCOP
typedef utility::pointer::owning_ptr < RestrictIdentitiesAtAlignedPositionsOperation >	RestrictIdentitiesAtAlignedPositionsOperationOP
typedef utility::pointer::owning_ptr < RestrictIdentitiesAtAlignedPositionsOperation const >	RestrictIdentitiesAtAlignedPositionsOperationCOP
typedef utility::pointer::owning_ptr < RestrictInterGroupVectorOperation >	RestrictInterGroupVectorOperationOP
typedef utility::pointer::owning_ptr < RestrictInterGroupVectorOperation const >	RestrictInterGroupVectorOperationCOP
typedef utility::pointer::owning_ptr < RestrictNativeResiduesOperation >	RestrictNativeResiduesOperationOP
typedef utility::pointer::owning_ptr < RestrictNonSurfaceToRepackingOperation >	RestrictNonSurfaceToRepackingOperationOP
typedef utility::pointer::owning_ptr < RestrictOperationsBase >	RestrictOperationsBaseOP
typedef utility::pointer::owning_ptr < RestrictOperationsBase const >	RestrictOperationsBaseCOP
typedef utility::pointer::owning_ptr < RestrictResiduesToRepackingOperation >	RestrictResiduesToRepackingOperationOP
typedef utility::pointer::owning_ptr < RestrictResiduesToRepackingOperation const >	RestrictResiduesToRepackingOperationCOP
typedef utility::pointer::owning_ptr < RestrictToAlignedSegmentsOperation >	RestrictToAlignedSegmentsOperationOP
typedef utility::pointer::owning_ptr < RestrictToAlignedSegmentsOperation const >	RestrictToAlignedSegmentsOperationCOP
typedef utility::pointer::owning_ptr < RestrictToCDRH3Loop >	RestrictToCDRH3LoopOP
typedef utility::pointer::owning_ptr < RestrictToInterface >	RestrictToInterfaceOP
typedef utility::pointer::owning_ptr < RestrictToInterface >	RestrictToInterfaceCOP
typedef utility::pointer::owning_ptr < RestrictToInterfaceOperation >	RestrictToInterfaceOperationOP
typedef utility::pointer::owning_ptr < RestrictToInterfaceOperation const >	RestrictToInterfaceOperationCOP
typedef utility::pointer::owning_ptr < RestrictToInterfaceVectorOperation >	RestrictToInterfaceVectorOperationOP
typedef utility::pointer::owning_ptr < RestrictToInterfaceVectorOperation const >	RestrictToInterfaceVectorOperationCOP
typedef utility::pointer::owning_ptr < RestrictToLoopsAndNeighbors >	RestrictToLoopsAndNeighborsOP
typedef utility::pointer::owning_ptr < RestrictToNeighborhoodOperation >	RestrictToNeighborhoodOperationOP
typedef utility::pointer::owning_ptr < RestrictToNeighborhoodOperation const >	RestrictToNeighborhoodOperationCOP
typedef utility::pointer::owning_ptr < RestrictToTerminiOperation >	RestrictToTerminiOperationOP
typedef utility::pointer::owning_ptr < RestrictToTerminiOperation const >	RestrictToTerminiOperationCOP
typedef utility::pointer::owning_ptr < SelectBySASAOperation >	SelectBySASAOperationOP
typedef utility::pointer::owning_ptr < SelectBySASAOperation const >	SelectBySASAOperationCOP
typedef utility::pointer::owning_ptr < SeqprofConsensusOperation >	SeqprofConsensusOperationOP
typedef utility::pointer::owning_ptr < RestrictConservedLowDdgOperation >	RestrictConservedLowDdgOperationOP
typedef utility::pointer::owning_ptr < SetIGTypeOperation >	SetIGTypeOperationOP
typedef utility::pointer::owning_ptr < SetIGTypeOperation const >	SetIGTypeOperationCOP
typedef utility::pointer::owning_ptr < ThreadSequenceOperation >	ThreadSequenceOperationOP
typedef utility::pointer::owning_ptr < ThreadSequenceOperation const >	ThreadSequenceOperationCOP

Functions
bool	is_part (utility::vector1< core::Size > vec, core::Size pos)

Typedef Documentation

typedef utility::pointer::owning_ptr< DesignAroundOperation const > protocols::toolbox::task_operations::DesignAroundOperationCOP

Definition at line 26 of file DesignAroundOperation.fwd.hh.

typedef utility::pointer::owning_ptr< DesignAroundOperation > protocols::toolbox::task_operations::DesignAroundOperationOP

Definition at line 23 of file DesignAroundOperation.fwd.hh.

typedef utility::pointer::owning_ptr< InterfaceTaskOperation > protocols::toolbox::task_operations::InterfaceTaskOperationCOP

Definition at line 28 of file InterfaceTaskOperation.fwd.hh.

typedef utility::pointer::owning_ptr< InterfaceTaskOperation > protocols::toolbox::task_operations::InterfaceTaskOperationOP

Definition at line 26 of file InterfaceTaskOperation.fwd.hh.

typedef utility::pointer::owning_ptr< JointSequenceOperation > protocols::toolbox::task_operations::JointSequenceOperationOP

Definition at line 24 of file JointSequenceOperation.fwd.hh.

typedef utility::pointer::owning_ptr< LimitAromaChi2_RotamerSetOperation const > protocols::toolbox::task_operations::LimitAromaChi2_RotamerSetOperationCOP

Definition at line 29 of file LimitAromaChi2Operation.fwd.hh.

typedef utility::pointer::owning_ptr< LimitAromaChi2_RotamerSetOperation > protocols::toolbox::task_operations::LimitAromaChi2_RotamerSetOperationOP

Definition at line 26 of file LimitAromaChi2Operation.fwd.hh.

typedef utility::pointer::owning_ptr< LimitAromaChi2Operation const > protocols::toolbox::task_operations::LimitAromaChi2OperationCOP

Definition at line 32 of file LimitAromaChi2Operation.fwd.hh.

typedef utility::pointer::owning_ptr< LimitAromaChi2Operation > protocols::toolbox::task_operations::LimitAromaChi2OperationOP

Definition at line 31 of file LimitAromaChi2Operation.fwd.hh.

typedef utility::pointer::owning_ptr< ModifyAnnealer const > protocols::toolbox::task_operations::ModifyAnnealerCOP

Definition at line 28 of file ModifyAnnealer.fwd.hh.

typedef utility::pointer::owning_ptr< ModifyAnnealer > protocols::toolbox::task_operations::ModifyAnnealerOP

Definition at line 26 of file ModifyAnnealer.fwd.hh.

typedef utility::pointer::owning_ptr< PreventChainFromRepackingOperation const > protocols::toolbox::task_operations::PreventChainFromRepackingOperationCOP

Definition at line 26 of file PreventChainFromRepackingOperation.fwd.hh.

typedef utility::pointer::owning_ptr< PreventChainFromRepackingOperation > protocols::toolbox::task_operations::PreventChainFromRepackingOperationOP

Definition at line 23 of file PreventChainFromRepackingOperation.fwd.hh.

typedef utility::pointer::owning_ptr< PreventResiduesFromRepackingOperation const > protocols::toolbox::task_operations::PreventResiduesFromRepackingOperationCOP

Definition at line 26 of file PreventResiduesFromRepackingOperation.fwd.hh.

typedef utility::pointer::owning_ptr< PreventResiduesFromRepackingOperation > protocols::toolbox::task_operations::PreventResiduesFromRepackingOperationOP

Definition at line 23 of file PreventResiduesFromRepackingOperation.fwd.hh.

typedef utility::pointer::owning_ptr< ProteinInterfaceDesignOperation const > protocols::toolbox::task_operations::ProteinInterfaceDesignOperationCOP

Definition at line 26 of file ProteinInterfaceDesignOperation.fwd.hh.

typedef utility::pointer::owning_ptr< ProteinInterfaceDesignOperation > protocols::toolbox::task_operations::ProteinInterfaceDesignOperationOP

Definition at line 23 of file ProteinInterfaceDesignOperation.fwd.hh.

typedef utility::pointer::owning_ptr< ReadResfileFromDB > protocols::toolbox::task_operations::ReadResfileFromDBOP

Definition at line 23 of file ReadResfileFromDB.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictByCalculatorsOperation const > protocols::toolbox::task_operations::RestrictByCalculatorsOperationCOP

Definition at line 26 of file RestrictByCalculatorsOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictByCalculatorsOperation > protocols::toolbox::task_operations::RestrictByCalculatorsOperationOP

Definition at line 23 of file RestrictByCalculatorsOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictChainToRepackingOperation const > protocols::toolbox::task_operations::RestrictChainToRepackingOperationCOP

Definition at line 26 of file RestrictChainToRepackingOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictChainToRepackingOperation > protocols::toolbox::task_operations::RestrictChainToRepackingOperationOP

Definition at line 23 of file RestrictChainToRepackingOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictConservedLowDdgOperation > protocols::toolbox::task_operations::RestrictConservedLowDdgOperationOP

Definition at line 27 of file SeqprofConsensusOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictIdentitiesAtAlignedPositionsOperation const > protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperationCOP

Definition at line 26 of file RestrictIdentitiesAtAlignedPositions.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictIdentitiesAtAlignedPositionsOperation > protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperationOP

Definition at line 23 of file RestrictIdentitiesAtAlignedPositions.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictInterGroupVectorOperation const > protocols::toolbox::task_operations::RestrictInterGroupVectorOperationCOP

Definition at line 26 of file RestrictInterGroupVectorOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictInterGroupVectorOperation > protocols::toolbox::task_operations::RestrictInterGroupVectorOperationOP

Definition at line 23 of file RestrictInterGroupVectorOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictNativeResiduesOperation > protocols::toolbox::task_operations::RestrictNativeResiduesOperationOP

Definition at line 23 of file RestrictNativeResiduesOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictNonSurfaceToRepackingOperation > protocols::toolbox::task_operations::RestrictNonSurfaceToRepackingOperationOP

Definition at line 23 of file RestrictNonSurfaceToRepackingOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictOperationsBase const > protocols::toolbox::task_operations::RestrictOperationsBaseCOP

Definition at line 26 of file RestrictOperationsBase.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictOperationsBase > protocols::toolbox::task_operations::RestrictOperationsBaseOP

Definition at line 23 of file RestrictOperationsBase.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictResiduesToRepackingOperation const > protocols::toolbox::task_operations::RestrictResiduesToRepackingOperationCOP

Definition at line 26 of file RestrictResiduesToRepackingOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictResiduesToRepackingOperation > protocols::toolbox::task_operations::RestrictResiduesToRepackingOperationOP

Definition at line 23 of file RestrictResiduesToRepackingOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToAlignedSegmentsOperation const > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperationCOP

Definition at line 26 of file RestrictToAlignedSegments.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToAlignedSegmentsOperation > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperationOP

Definition at line 23 of file RestrictToAlignedSegments.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToCDRH3Loop > protocols::toolbox::task_operations::RestrictToCDRH3LoopOP

Definition at line 23 of file RestrictToCDRH3Loop.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToInterface > protocols::toolbox::task_operations::RestrictToInterfaceCOP

Definition at line 30 of file RestrictToInterface.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToInterface > protocols::toolbox::task_operations::RestrictToInterfaceOP

Definition at line 28 of file RestrictToInterface.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToInterfaceOperation const > protocols::toolbox::task_operations::RestrictToInterfaceOperationCOP

Definition at line 26 of file RestrictToInterfaceOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToInterfaceOperation > protocols::toolbox::task_operations::RestrictToInterfaceOperationOP

Definition at line 23 of file RestrictToInterfaceOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToInterfaceVectorOperation const > protocols::toolbox::task_operations::RestrictToInterfaceVectorOperationCOP

Definition at line 26 of file RestrictToInterfaceVectorOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToInterfaceVectorOperation > protocols::toolbox::task_operations::RestrictToInterfaceVectorOperationOP

Definition at line 23 of file RestrictToInterfaceVectorOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToLoopsAndNeighbors > protocols::toolbox::task_operations::RestrictToLoopsAndNeighborsOP

Definition at line 23 of file RestrictToLoopsAndNeighbors.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToNeighborhoodOperation const > protocols::toolbox::task_operations::RestrictToNeighborhoodOperationCOP

Definition at line 26 of file RestrictToNeighborhoodOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToNeighborhoodOperation > protocols::toolbox::task_operations::RestrictToNeighborhoodOperationOP

Definition at line 23 of file RestrictToNeighborhoodOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToTerminiOperation const > protocols::toolbox::task_operations::RestrictToTerminiOperationCOP

Definition at line 27 of file RestrictToTerminiOperation.fwd.hh.

typedef utility::pointer::owning_ptr< RestrictToTerminiOperation > protocols::toolbox::task_operations::RestrictToTerminiOperationOP

Definition at line 24 of file RestrictToTerminiOperation.fwd.hh.

typedef utility::pointer::owning_ptr< SelectBySASAOperation const > protocols::toolbox::task_operations::SelectBySASAOperationCOP

Definition at line 25 of file SelectBySASAOperation.fwd.hh.

typedef utility::pointer::owning_ptr< SelectBySASAOperation > protocols::toolbox::task_operations::SelectBySASAOperationOP

Definition at line 22 of file SelectBySASAOperation.fwd.hh.

typedef utility::pointer::owning_ptr< SeqprofConsensusOperation > protocols::toolbox::task_operations::SeqprofConsensusOperationOP

Definition at line 24 of file SeqprofConsensusOperation.fwd.hh.

typedef utility::pointer::owning_ptr< SetIGTypeOperation const > protocols::toolbox::task_operations::SetIGTypeOperationCOP

Definition at line 28 of file SetIGTypeOperation.fwd.hh.

typedef utility::pointer::owning_ptr< SetIGTypeOperation > protocols::toolbox::task_operations::SetIGTypeOperationOP

Definition at line 26 of file SetIGTypeOperation.fwd.hh.

typedef utility::pointer::owning_ptr< ThreadSequenceOperation const > protocols::toolbox::task_operations::ThreadSequenceOperationCOP

Definition at line 26 of file ThreadSequenceOperation.fwd.hh.

typedef utility::pointer::owning_ptr< ThreadSequenceOperation > protocols::toolbox::task_operations::ThreadSequenceOperationOP

Definition at line 23 of file ThreadSequenceOperation.fwd.hh.

Function Documentation

bool protocols::toolbox::task_operations::is_part	(	utility::vector1< core::Size >	vec,
		core::Size	pos
	)

Definition at line 327 of file LayerOperations.cc.