protocols::dna::DnaChains Class Reference

#include <DnaChains.hh>

Inheritance diagram for protocols::dna::DnaChains:

Collaboration diagram for protocols::dna::DnaChains:

Public Member Functions
	DnaChains ()
virtual	~DnaChains ()
	DnaChains (DnaChains const &other)
DnaChainsOP	clone () const
void	clear ()
bool	empty () const
core::Size	size () const
DnaPosition &	operator[] (core::Size resindex)
DnaPosition const &	operator[] (core::Size resindex) const
DnaPositions &	positions ()
DnaPositions const &	positions () const
DnaPositions::iterator	begin ()
DnaPositions::iterator	end ()
DnaPositions::const_iterator	begin () const
DnaPositions::const_iterator	end () const
bool	is_top (core::Size index) const
bool	contains (core::Size index) const
void	print (core::pose::Pose const &pose, std::ostream &os) const

Private Attributes
DnaPositions	positions_

Detailed Description

Definition at line 58 of file DnaChains.hh.

Constructor & Destructor Documentation

protocols::dna::DnaChains::DnaChains

(

)

Definition at line 32 of file DnaChains.cc.

Referenced by clone().

protocols::dna::DnaChains::~DnaChains ( )

virtual

Definition at line 34 of file DnaChains.cc.

protocols::dna::DnaChains::DnaChains

(

DnaChains const &

other)

Definition at line 36 of file DnaChains.cc.

References positions(), and positions_.

Member Function Documentation

DnaPositions::iterator protocols::dna::DnaChains::begin ( )

inline

Definition at line 77 of file DnaChains.hh.

References positions_.

Referenced by protocols::dna::WatsonCrickRotamerCouplings::apply().

DnaPositions::const_iterator protocols::dna::DnaChains::begin ( ) const

inline

Definition at line 79 of file DnaChains.hh.

References positions_.

void protocols::dna::DnaChains::clear ( )

inline

Definition at line 66 of file DnaChains.hh.

References positions_.

Referenced by protocols::dna::find_basepairs().

DnaChainsOP protocols::dna::DnaChains::clone

(

)

const

Definition at line 42 of file DnaChains.cc.

References DnaChains().

bool protocols::dna::DnaChains::contains

(

core::Size

index)

const

Definition at line 48 of file DnaChains.cc.

References is_top(), and positions_.

Referenced by protocols::dna::find_basepairs().

bool protocols::dna::DnaChains::empty ( ) const

inline

Definition at line 67 of file DnaChains.hh.

References positions_.

Referenced by protocols::dna::find_basepairs().

DnaPositions::iterator protocols::dna::DnaChains::end ( )

inline

Definition at line 78 of file DnaChains.hh.

References positions_.

Referenced by protocols::dna::WatsonCrickRotamerCouplings::apply().

DnaPositions::const_iterator protocols::dna::DnaChains::end ( ) const

inline

Definition at line 80 of file DnaChains.hh.

References positions_.

bool protocols::dna::DnaChains::is_top ( core::Size  index) const

inline

Definition at line 83 of file DnaChains.hh.

References positions_.

Referenced by contains().

DnaPosition& protocols::dna::DnaChains::operator[] ( core::Size  resindex)

inline

Definition at line 70 of file DnaChains.hh.

References positions_.

DnaPosition const& protocols::dna::DnaChains::operator[] ( core::Size  resindex) const

inline

Definition at line 71 of file DnaChains.hh.

References positions_.

DnaPositions& protocols::dna::DnaChains::positions ( )

inline

Definition at line 74 of file DnaChains.hh.

References positions_.

Referenced by DnaChains().

DnaPositions const& protocols::dna::DnaChains::positions ( ) const

inline

Definition at line 75 of file DnaChains.hh.

References positions_.

void protocols::dna::DnaChains::print	(	core::pose::Pose const &	pose,
		std::ostream &	os
	)		const

Definition at line 63 of file DnaChains.cc.

References protocols::dna::DnaPosition::bottom(), core::chemical::ResidueType::name3(), protocols::dna::DnaPosition::paired(), core::pose::Pose::pdb_info(), positions_, core::pose::Pose::residue_type(), and protocols::dna::DnaPosition::top().

Referenced by protocols::dna::find_basepairs().

core::Size protocols::dna::DnaChains::size ( ) const

inline

Definition at line 68 of file DnaChains.hh.

References positions_.

Member Data Documentation

DnaPositions protocols::dna::DnaChains::positions_

private

Definition at line 91 of file DnaChains.hh.

Referenced by begin(), clear(), contains(), DnaChains(), empty(), end(), is_top(), operator[](), positions(), print(), and size().

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The documentation for this class was generated from the following files:

• src/protocols/dna/DnaChains.hh
• src/protocols/dna/DnaChains.cc