core::pack::interaction_graph::DoubleLazyNode Class Reference

#include <DoubleLazyInteractionGraph.hh>

Inheritance diagram for core::pack::interaction_graph::DoubleLazyNode:

Collaboration diagram for core::pack::interaction_graph::DoubleLazyNode:

Public Member Functions
	DoubleLazyNode (InteractionGraphBase *owner, int node_id, int num_states)
	main constructor, no default or copy constructors More...
virtual	~DoubleLazyNode ()
virtual void	prepare_for_simulated_annealing ()
virtual void	print () const
virtual bool	state_unassigned () const
virtual core::PackerEnergy	get_totalE () const
void	assign_zero_state ()
void	assign_state (int new_state)
void	partial_assign_state (int new_state)
void	complete_state_assignment ()
int	get_current_state () const
core::PackerEnergy	get_one_body_energy_current_state () const
core::PackerEnergy	project_deltaE_for_substitution (int alternate_state, core::PackerEnergy &prev_node_energy)
void	commit_considered_substitution ()
core::PackerEnergy	compute_pair_energy_for_current_state (int edge_making_energy_request)
void	acknowledge_neighbors_state_substitution (int edge_to_altered_neighbor, core::PackerEnergy new_edge_energy, int other_node_new_state, SparseMatrixIndex const &other_node_new_state_sparse_info)
void	acknowledge_neighbors_partial_state_substitution (int edge_to_altered_neighbor, int other_node_new_, SparseMatrixIndex const &other_node_new_state_sparse_info)
SparseMatrixIndex const &	get_sparse_mat_info_for_curr_state () const
void	print_internal_energies () const
void	update_internal_energy_sums ()
virtual unsigned int	count_static_memory () const
virtual unsigned int	count_dynamic_memory () const
virtual int	aatype_for_state (int state) const
Public Member Functions inherited from core::pack::interaction_graph::OnTheFlyNode
	OnTheFlyNode (InteractionGraphBase *owner, int node_id, int num_states)
	main constructor, no default or copy constructors More...
virtual	~OnTheFlyNode ()
void	set_rotamers (rotamer_set::RotamerSetCOP rotamers)
virtual void	zero_one_body_energies ()
virtual void	add_to_one_body_energies (ObjexxFCL::FArray1< core::PackerEnergy > &energy1b)
virtual void	update_one_body_energy (int state, core::PackerEnergy energy)
virtual void	set_one_body_energy (int state, core::PackerEnergy energy)
virtual void	add_to_one_body_energy (int state, core::PackerEnergy energy)
virtual void	zero_one_body_energy (int state)
int	get_num_aa_types () const
utility::vector1< int > &	get_num_states_for_aa_types ()
utility::vector1< int > const &	get_num_states_for_aa_types () const
int	get_num_states_for_aa_type (int aa_type)
SparseMatrixIndex const &	get_sparse_mat_info_for_state (int state) const
int	get_state_offset_for_aatype (int aatype) const
core::PackerEnergy	get_one_body_energy (int state) const
bool	distinguish_backbone_and_sidechain () const
void	distinguish_backbone_and_sidechain (bool setting)
core::PackerEnergy	compute_rotamer_pair_energy (int edge_making_energy_request, int state_this, int state_other) const
Public Member Functions inherited from core::pack::interaction_graph::FixedBBNode
virtual	~FixedBBNode ()
	FixedBBNode (InteractionGraphBase *owner, int node_id, int num_states)
Public Member Functions inherited from core::pack::interaction_graph::NodeBase
virtual	~NodeBase ()
	virtual destructor More...
	NodeBase (InteractionGraphBase *, int node_id, int num_states)
	Main constructor, no default constructor nor copy constructor. More...
int	get_num_states () const
	returns the number of states for this node More...
std::list< EdgeBase * >::iterator	add_edge (EdgeBase *edge_ptr)
	adds edge pointer to edge list; returns an iterator to the new list element More...
void	drop_edge (std::list< EdgeBase * >::iterator edge_iterator)
	removes an edge iterator from the node's edge list More...
void	drop_all_edges ()
	deletes all edges incident upon this node More...
EdgeBase *	find_edge (int other_node_index) const
	a slow (linear) search for an edge. The edge is identified by the index of the node to which the edge connects this node. Returns NULL when there is no such connecting edge. More...
void	depth_first_connected_component_counting ()
	performs a depth first traversal of the graph. Each node informs the graph that the traversal resulted in arriving at the node. More...
std::list< EdgeBase * > ::const_iterator	edge_list_begin ()
std::list< EdgeBase * > ::const_iterator	edge_list_end ()
int	get_node_index () const
int	get_num_incident_edges () const
int	get_num_edges_to_smaller_indexed_nodes () const
int	get_num_edges_to_larger_indexed_nodes () const
EdgeBase const *	get_incident_edge (int index) const
	These functions are public for the sake of writing good unit tests. More...
EdgeBase *	get_incident_edge (int index)
int	get_index_of_adjacent_node (int index) const
NodeBase const *	get_adjacent_node (int index) const
NodeBase *	get_adjacent_node (int index)

Protected Member Functions
core::PackerEnergy	get_curr_pd_energy_total () const
core::PackerEnergy	get_alt_pd_energy_total () const
void	set_alternate_state (int alt)
int	get_alternate_state () const
void	calc_deltaEpd (int alternate_state)
bool	considering_alternate_state () const
Protected Member Functions inherited from core::pack::interaction_graph::OnTheFlyNode
OnTheFlyEdge *	get_incident_otf_edge (int edge)
OnTheFlyEdge const *	get_incident_otf_edge (int edge) const
OnTheFlyNode *	get_adjacent_otf_node (int index)
OnTheFlyNode const *	get_adjacent_otf_node (int index) const
OnTheFlyInteractionGraph *	get_on_the_fly_owner ()
OnTheFlyInteractionGraph const *	get_on_the_fly_owner () const
conformation::Residue const &	get_rotamer (int state) const
BoundingSphere const &	sc_bounding_sphere (int state) const
BoundingSphere const &	bb_bounding_sphere () const

Private Member Functions
void	update_internal_vectors ()
DoubleLazyEdge const *	get_incident_dlazy_edge (int index) const
	Pointer Downcasts. More...
DoubleLazyEdge *	get_incident_dlazy_edge (int index)
DoubleLazyNode const *	get_adjacent_dlazy_node (int index) const
DoubleLazyNode *	get_adjacent_dlazy_node (int index)
DoubleLazyInteractionGraph const *	get_dlazy_ig_owner () const
DoubleLazyInteractionGraph *	get_dlazy_ig_owner ()
	DoubleLazyNode ()
	DoubleLazyNode (DoubleLazyNode const &)
DoubleLazyNode &	operator= (DoubleLazyNode const &)

Private Attributes
std::vector< int >	neighbors_curr_state_
std::vector< SparseMatrixIndex >	neighbors_curr_state_sparse_info_
int	current_state_
SparseMatrixIndex	curr_state_sparse_mat_info_
core::PackerEnergy	curr_state_one_body_energy_
core::PackerEnergy	curr_state_total_energy_
std::vector< core::PackerEnergy >	curr_state_two_body_energies_
int	alternate_state_
SparseMatrixIndex	alt_state_sparse_mat_info_
core::PackerEnergy	alternate_state_one_body_energy_
core::PackerEnergy	alternate_state_total_energy_
std::vector< core::PackerEnergy >	alternate_state_two_body_energies_
bool	alternate_state_is_being_considered_
bool	procrastinated_

Additional Inherited Members
Public Types inherited from core::pack::interaction_graph::OnTheFlyNode
typedef std::pair< Vector, Real >	BoundingSphere

Detailed Description

Definition at line 48 of file DoubleLazyInteractionGraph.hh.

Constructor & Destructor Documentation

core::pack::interaction_graph::DoubleLazyNode::DoubleLazyNode	(	InteractionGraphBase *	owner,
		int	node_id,
		int	num_states
	)

main constructor, no default or copy constructors

DoubleLazyNode::(InteractionGraphBase *, int, int)

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Authors

apl

Last Modified:

Definition at line 54 of file DoubleLazyInteractionGraph.cc.

core::pack::interaction_graph::DoubleLazyNode::~DoubleLazyNode ( )

virtual

Definition at line 71 of file DoubleLazyInteractionGraph.cc.

core::pack::interaction_graph::DoubleLazyNode::DoubleLazyNode ( )

private

Referenced by count_static_memory().

core::pack::interaction_graph::DoubleLazyNode::DoubleLazyNode ( DoubleLazyNode const &  )

private

Member Function Documentation

int core::pack::interaction_graph::DoubleLazyNode::aatype_for_state ( int  state) const

virtual

Definition at line 159 of file DoubleLazyInteractionGraph.cc.

References core::pack::interaction_graph::SparseMatrixIndex::get_aa_type(), and core::pack::interaction_graph::OnTheFlyNode::get_sparse_mat_info_for_state().

Referenced by core::pack::interaction_graph::DoubleLazyInteractionGraph::aatype_for_node_state().

void core::pack::interaction_graph::DoubleLazyNode::acknowledge_neighbors_partial_state_substitution	(	int	edge_to_altered_neighbor,
		int	other_node_new_state,
		SparseMatrixIndex const &	other_node_new_state_sparse_info
	)

DoubleLazyNode::acknowledge_neighbors_partial_state_substitution

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Authors

apl

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Definition at line 463 of file DoubleLazyInteractionGraph.cc.

References curr_state_total_energy_, curr_state_two_body_energies_, neighbors_curr_state_, and neighbors_curr_state_sparse_info_.

Referenced by core::pack::interaction_graph::DoubleLazyEdge::acknowledge_partial_state_change().

void core::pack::interaction_graph::DoubleLazyNode::acknowledge_neighbors_state_substitution ( int  edge_to_altered_neighbor, core::PackerEnergy  new_edge_energy, int  other_node_new_state, SparseMatrixIndex const &  other_node_new_state_sparse_info  )

inline

DoubleLazyNode::acknowledge_neighbors_state_substitution

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apl

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Definition at line 757 of file DoubleLazyInteractionGraph.hh.

References curr_state_total_energy_, curr_state_two_body_energies_, neighbors_curr_state_, and neighbors_curr_state_sparse_info_.

Referenced by core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_change(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_zeroed(), and core::pack::interaction_graph::DoubleLazyEdge::acknowledge_substitution().

void core::pack::interaction_graph::DoubleLazyNode::assign_state

(

int

new_state)

DoubleLazyNode::assign_state

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apl

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Definition at line 228 of file DoubleLazyInteractionGraph.cc.

References core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_change(), alternate_state_is_being_considered_, assign_zero_state(), curr_state_one_body_energy_, curr_state_sparse_mat_info_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, get_incident_dlazy_edge(), core::pack::interaction_graph::NodeBase::get_node_index(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), core::pack::interaction_graph::NodeBase::get_num_states(), core::pack::interaction_graph::OnTheFlyNode::get_one_body_energy(), and core::pack::interaction_graph::OnTheFlyNode::get_sparse_mat_info_for_state().

Referenced by core::pack::interaction_graph::DoubleLazyInteractionGraph::set_state_for_node().

void core::pack::interaction_graph::DoubleLazyNode::assign_zero_state ( )

virtual

DoubleLazyNode::assign_zero_state

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apl

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Implements core::pack::interaction_graph::NodeBase.

Definition at line 186 of file DoubleLazyInteractionGraph.cc.

References core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_zeroed(), alternate_state_, alternate_state_is_being_considered_, curr_state_one_body_energy_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, get_incident_dlazy_edge(), core::pack::interaction_graph::NodeBase::get_node_index(), and core::pack::interaction_graph::NodeBase::get_num_incident_edges().

Referenced by assign_state(), core::pack::interaction_graph::DoubleLazyInteractionGraph::blanket_assign_state_0(), and partial_assign_state().

void core::pack::interaction_graph::DoubleLazyNode::calc_deltaEpd ( int  alternate_state)

protected

Definition at line 586 of file DoubleLazyInteractionGraph.cc.

References project_deltaE_for_substitution().

void core::pack::interaction_graph::DoubleLazyNode::commit_considered_substitution

(

)

DoubleLazyNode::commit_considered_substitution

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apl

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Definition at line 358 of file DoubleLazyInteractionGraph.cc.

References core::pack::interaction_graph::DoubleLazyEdge::acknowledge_substitution(), alt_state_sparse_mat_info_, alternate_state_, alternate_state_is_being_considered_, alternate_state_one_body_energy_, alternate_state_total_energy_, alternate_state_two_body_energies_, curr_state_one_body_energy_, curr_state_sparse_mat_info_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, get_incident_dlazy_edge(), core::pack::interaction_graph::NodeBase::get_node_index(), and core::pack::interaction_graph::NodeBase::get_num_incident_edges().

Referenced by core::pack::interaction_graph::DoubleLazyInteractionGraph::commit_considered_substitution().

void core::pack::interaction_graph::DoubleLazyNode::complete_state_assignment

(

)

DoubleLazyNode::complete_state_assignment

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apl

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Definition at line 320 of file DoubleLazyInteractionGraph.cc.

References curr_state_one_body_energy_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, get_incident_dlazy_edge(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), and core::pack::interaction_graph::OnTheFlyNode::get_one_body_energy().

Referenced by core::pack::interaction_graph::DoubleLazyInteractionGraph::set_network_state().

core::PackerEnergy core::pack::interaction_graph::DoubleLazyNode::compute_pair_energy_for_current_state

(

int

edge_making_energy_request)

DoubleLazyNode::compute_pair_energy_for_current_state

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apl

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Definition at line 428 of file DoubleLazyInteractionGraph.cc.

References core::pack::interaction_graph::OnTheFlyNode::compute_rotamer_pair_energy(), current_state_, and neighbors_curr_state_.

bool core::pack::interaction_graph::DoubleLazyNode::considering_alternate_state ( ) const

inlineprotected

Definition at line 138 of file DoubleLazyInteractionGraph.hh.

References alternate_state_is_being_considered_.

unsigned int core::pack::interaction_graph::DoubleLazyNode::count_dynamic_memory ( ) const

virtual

reports the amount of dynamic memory this node allocates recursing to its base class

Reimplemented from core::pack::interaction_graph::OnTheFlyNode.

Definition at line 140 of file DoubleLazyInteractionGraph.cc.

References alternate_state_two_body_energies_, core::pack::interaction_graph::OnTheFlyNode::count_dynamic_memory(), curr_state_two_body_energies_, neighbors_curr_state_, and neighbors_curr_state_sparse_info_.

unsigned int core::pack::interaction_graph::DoubleLazyNode::count_static_memory ( ) const

virtual

DoubleLazyNode::getMemoryUsageInBytes

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apl

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Implements core::pack::interaction_graph::OnTheFlyNode.

Definition at line 134 of file DoubleLazyInteractionGraph.cc.

References DoubleLazyNode().

DoubleLazyNode const * core::pack::interaction_graph::DoubleLazyNode::get_adjacent_dlazy_node ( int  index) const

inlineprivate

Definition at line 559 of file DoubleLazyInteractionGraph.hh.

References core::pack::interaction_graph::NodeBase::get_adjacent_node().

DoubleLazyNode * core::pack::interaction_graph::DoubleLazyNode::get_adjacent_dlazy_node ( int  index)

inlineprivate

Definition at line 565 of file DoubleLazyInteractionGraph.hh.

References core::pack::interaction_graph::NodeBase::get_adjacent_node().

core::PackerEnergy core::pack::interaction_graph::DoubleLazyNode::get_alt_pd_energy_total ( ) const

inlineprotected

Definition at line 134 of file DoubleLazyInteractionGraph.hh.

References alternate_state_total_energy_.

int core::pack::interaction_graph::DoubleLazyNode::get_alternate_state ( ) const

inlineprotected

Definition at line 136 of file DoubleLazyInteractionGraph.hh.

References alternate_state_.

core::PackerEnergy core::pack::interaction_graph::DoubleLazyNode::get_curr_pd_energy_total ( ) const

inlineprotected

Definition at line 133 of file DoubleLazyInteractionGraph.hh.

References curr_state_total_energy_.

int core::pack::interaction_graph::DoubleLazyNode::get_current_state ( ) const

inline

Definition at line 71 of file DoubleLazyInteractionGraph.hh.

References current_state_.

Referenced by core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_change(), core::pack::interaction_graph::DoubleLazyEdge::get_energy_following_partial_state_assignment(), and core::pack::interaction_graph::DoubleLazyInteractionGraph::print_current_state_assignment().

DoubleLazyInteractionGraph const * core::pack::interaction_graph::DoubleLazyNode::get_dlazy_ig_owner ( ) const

inlineprivate

Definition at line 571 of file DoubleLazyInteractionGraph.hh.

References core::pack::interaction_graph::NodeBase::get_owner().

DoubleLazyInteractionGraph * core::pack::interaction_graph::DoubleLazyNode::get_dlazy_ig_owner ( )

inlineprivate

Definition at line 577 of file DoubleLazyInteractionGraph.hh.

References core::pack::interaction_graph::NodeBase::get_owner().

DoubleLazyEdge const * core::pack::interaction_graph::DoubleLazyNode::get_incident_dlazy_edge ( int  index) const

inlineprivate

Pointer Downcasts.

Definition at line 547 of file DoubleLazyInteractionGraph.hh.

References core::pack::interaction_graph::NodeBase::get_incident_edge().

Referenced by assign_state(), assign_zero_state(), commit_considered_substitution(), complete_state_assignment(), partial_assign_state(), and update_internal_energy_sums().

DoubleLazyEdge * core::pack::interaction_graph::DoubleLazyNode::get_incident_dlazy_edge ( int  index)

inlineprivate

Definition at line 553 of file DoubleLazyInteractionGraph.hh.

References core::pack::interaction_graph::NodeBase::get_incident_edge().

core::PackerEnergy core::pack::interaction_graph::DoubleLazyNode::get_one_body_energy_current_state ( ) const

inline

Definition at line 74 of file DoubleLazyInteractionGraph.hh.

References curr_state_one_body_energy_.

Referenced by core::pack::interaction_graph::DoubleLazyInteractionGraph::get_energy_sum_for_vertex_group().

SparseMatrixIndex const & core::pack::interaction_graph::DoubleLazyNode::get_sparse_mat_info_for_curr_state ( ) const

inline

DoubleLazyNode::get_sparse_mat_info_for_curr_state

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apl

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Definition at line 728 of file DoubleLazyInteractionGraph.hh.

References current_state_, and core::pack::interaction_graph::OnTheFlyNode::get_sparse_mat_info_for_state().

Referenced by core::pack::interaction_graph::DoubleLazyEdge::get_energy_following_partial_state_assignment().

virtual core::PackerEnergy core::pack::interaction_graph::DoubleLazyNode::get_totalE ( ) const

inlinevirtual

Definition at line 63 of file DoubleLazyInteractionGraph.hh.

References curr_state_total_energy_.

DoubleLazyNode& core::pack::interaction_graph::DoubleLazyNode::operator= ( DoubleLazyNode const &  )

private

void core::pack::interaction_graph::DoubleLazyNode::partial_assign_state

(

int

new_state)

DoubleLazyNode::partial_assign_state

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apl

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Definition at line 279 of file DoubleLazyInteractionGraph.cc.

References core::pack::interaction_graph::DoubleLazyEdge::acknowledge_partial_state_change(), alternate_state_is_being_considered_, assign_zero_state(), curr_state_sparse_mat_info_, current_state_, get_incident_dlazy_edge(), core::pack::interaction_graph::NodeBase::get_node_index(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), and core::pack::interaction_graph::OnTheFlyNode::get_sparse_mat_info_for_state().

Referenced by core::pack::interaction_graph::DoubleLazyInteractionGraph::set_network_state().

void core::pack::interaction_graph::DoubleLazyNode::prepare_for_simulated_annealing ( )

virtual

Implements core::pack::interaction_graph::NodeBase.

Definition at line 75 of file DoubleLazyInteractionGraph.cc.

References core::pack::interaction_graph::NodeBase::get_edge_vector_up_to_date(), and update_internal_vectors().

void core::pack::interaction_graph::DoubleLazyNode::print ( ) const

virtual

Implements core::pack::interaction_graph::NodeBase.

Definition at line 85 of file DoubleLazyInteractionGraph.cc.

References alternate_state_is_being_considered_, alternate_state_one_body_energy_, alternate_state_two_body_energies_, curr_state_one_body_energy_, curr_state_sparse_mat_info_, curr_state_two_body_energies_, current_state_, core::pack::interaction_graph::SparseMatrixIndex::get_aa_type(), core::pack::interaction_graph::NodeBase::get_index_of_adjacent_node(), core::pack::interaction_graph::NodeBase::get_node_index(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), core::pack::interaction_graph::NodeBase::get_num_states(), and core::pack::interaction_graph::SparseMatrixIndex::get_state_ind_for_this_aa_type().

Referenced by core::pack::interaction_graph::DoubleLazyInteractionGraph::print_current_state_assignment().

void core::pack::interaction_graph::DoubleLazyNode::print_internal_energies

(

)

const

DoubleLazyNode::print_internal_energies

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apl

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Definition at line 499 of file DoubleLazyInteractionGraph.cc.

References curr_state_one_body_energy_, curr_state_sparse_mat_info_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, core::pack::interaction_graph::SparseMatrixIndex::get_aa_type(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), and core::pack::interaction_graph::SparseMatrixIndex::get_state_ind_for_this_aa_type().

core::PackerEnergy core::pack::interaction_graph::DoubleLazyNode::project_deltaE_for_substitution ( int  alternate_state, core::PackerEnergy &  prev_node_energy  )

inline

DoubleLazyNode::project_deltaE_for_substitution

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apl

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Definition at line 655 of file DoubleLazyInteractionGraph.hh.

Referenced by calc_deltaEpd().

void core::pack::interaction_graph::DoubleLazyNode::set_alternate_state ( int  alt)

inlineprotected

Definition at line 135 of file DoubleLazyInteractionGraph.hh.

References alternate_state_.

virtual bool core::pack::interaction_graph::DoubleLazyNode::state_unassigned ( ) const

inlinevirtual

Implements core::pack::interaction_graph::NodeBase.

Definition at line 62 of file DoubleLazyInteractionGraph.hh.

References current_state_.

void core::pack::interaction_graph::DoubleLazyNode::update_internal_energy_sums

(

)

DoubleLazyNode::update_internal_energy_sums

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apl

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Definition at line 536 of file DoubleLazyInteractionGraph.cc.

References curr_state_one_body_energy_, curr_state_total_energy_, core::pack::interaction_graph::DoubleLazyEdge::get_current_two_body_energy(), core::pack::interaction_graph::NodeBase::get_edge_vector_up_to_date(), get_incident_dlazy_edge(), and core::pack::interaction_graph::NodeBase::get_num_incident_edges().

void core::pack::interaction_graph::DoubleLazyNode::update_internal_vectors ( )

private

DoubleLazyNode::update_internal_vectors

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@par	Global Read:

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apl

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Definition at line 569 of file DoubleLazyInteractionGraph.cc.

References alternate_state_two_body_energies_, curr_state_two_body_energies_, core::pack::interaction_graph::NodeBase::get_num_incident_edges(), neighbors_curr_state_, neighbors_curr_state_sparse_info_, and core::pack::interaction_graph::NodeBase::update_edge_vector().

Referenced by prepare_for_simulated_annealing().

Member Data Documentation

SparseMatrixIndex core::pack::interaction_graph::DoubleLazyNode::alt_state_sparse_mat_info_

private

Definition at line 176 of file DoubleLazyInteractionGraph.hh.

Referenced by commit_considered_substitution().

int core::pack::interaction_graph::DoubleLazyNode::alternate_state_

private

Definition at line 175 of file DoubleLazyInteractionGraph.hh.

Referenced by assign_zero_state(), commit_considered_substitution(), get_alternate_state(), and set_alternate_state().

bool core::pack::interaction_graph::DoubleLazyNode::alternate_state_is_being_considered_

private

Definition at line 181 of file DoubleLazyInteractionGraph.hh.

Referenced by assign_state(), assign_zero_state(), commit_considered_substitution(), considering_alternate_state(), partial_assign_state(), and print().

core::PackerEnergy core::pack::interaction_graph::DoubleLazyNode::alternate_state_one_body_energy_

private

Definition at line 177 of file DoubleLazyInteractionGraph.hh.

Referenced by commit_considered_substitution(), and print().

core::PackerEnergy core::pack::interaction_graph::DoubleLazyNode::alternate_state_total_energy_

private

Definition at line 178 of file DoubleLazyInteractionGraph.hh.

Referenced by commit_considered_substitution(), and get_alt_pd_energy_total().

std::vector< core::PackerEnergy > core::pack::interaction_graph::DoubleLazyNode::alternate_state_two_body_energies_

private

Definition at line 179 of file DoubleLazyInteractionGraph.hh.

Referenced by commit_considered_substitution(), count_dynamic_memory(), print(), and update_internal_vectors().

core::PackerEnergy core::pack::interaction_graph::DoubleLazyNode::curr_state_one_body_energy_

private

Definition at line 171 of file DoubleLazyInteractionGraph.hh.

Referenced by assign_state(), assign_zero_state(), commit_considered_substitution(), complete_state_assignment(), get_one_body_energy_current_state(), print(), print_internal_energies(), and update_internal_energy_sums().

SparseMatrixIndex core::pack::interaction_graph::DoubleLazyNode::curr_state_sparse_mat_info_

private

Definition at line 170 of file DoubleLazyInteractionGraph.hh.

Referenced by assign_state(), commit_considered_substitution(), partial_assign_state(), print(), and print_internal_energies().

core::PackerEnergy core::pack::interaction_graph::DoubleLazyNode::curr_state_total_energy_

private

Definition at line 172 of file DoubleLazyInteractionGraph.hh.

Referenced by acknowledge_neighbors_partial_state_substitution(), acknowledge_neighbors_state_substitution(), assign_state(), assign_zero_state(), commit_considered_substitution(), complete_state_assignment(), get_curr_pd_energy_total(), get_totalE(), print_internal_energies(), and update_internal_energy_sums().

std::vector< core::PackerEnergy > core::pack::interaction_graph::DoubleLazyNode::curr_state_two_body_energies_

private

Definition at line 173 of file DoubleLazyInteractionGraph.hh.

Referenced by acknowledge_neighbors_partial_state_substitution(), acknowledge_neighbors_state_substitution(), assign_state(), assign_zero_state(), commit_considered_substitution(), complete_state_assignment(), count_dynamic_memory(), print(), print_internal_energies(), and update_internal_vectors().

int core::pack::interaction_graph::DoubleLazyNode::current_state_

private

Definition at line 169 of file DoubleLazyInteractionGraph.hh.

Referenced by assign_state(), assign_zero_state(), commit_considered_substitution(), complete_state_assignment(), compute_pair_energy_for_current_state(), get_current_state(), get_sparse_mat_info_for_curr_state(), partial_assign_state(), print(), print_internal_energies(), and state_unassigned().

std::vector< int > core::pack::interaction_graph::DoubleLazyNode::neighbors_curr_state_

private

Definition at line 166 of file DoubleLazyInteractionGraph.hh.

Referenced by acknowledge_neighbors_partial_state_substitution(), acknowledge_neighbors_state_substitution(), compute_pair_energy_for_current_state(), count_dynamic_memory(), and update_internal_vectors().

std::vector< SparseMatrixIndex > core::pack::interaction_graph::DoubleLazyNode::neighbors_curr_state_sparse_info_

private

Definition at line 167 of file DoubleLazyInteractionGraph.hh.

Referenced by acknowledge_neighbors_partial_state_substitution(), acknowledge_neighbors_state_substitution(), count_dynamic_memory(), and update_internal_vectors().

bool core::pack::interaction_graph::DoubleLazyNode::procrastinated_

private

Definition at line 182 of file DoubleLazyInteractionGraph.hh.

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The documentation for this class was generated from the following files:

• src/core/pack/interaction_graph/DoubleLazyInteractionGraph.hh
• src/core/pack/interaction_graph/DoubleLazyInteractionGraph.cc