#include <NeighborTypeFilter.hh>

Inheritance diagram for protocols::simple_filters::NeighborTypeFilter:

Collaboration diagram for protocols::simple_filters::NeighborTypeFilter:

Public Member Functions
	NeighborTypeFilter ()

	NeighborTypeFilter (core::Size const target_residue, utility::vector1< bool > const residue_types, core::Real const distance_threshold)

bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const

core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...

std::vector< core::Size >	compute (core::pose::Pose const &pose) const

filters::FilterOP	clone () const

filters::FilterOP	fresh_instance () const

void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual	~NeighborTypeFilter ()

void	parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

virtual	~Filter ()

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	apply (core::io::serialization::PipeMap &pmap)

virtual void	score (core::io::serialization::PipeMap &pmap)

virtual core::Real	score (core::pose::Pose &pose)

virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

virtual std::string	name () const

Private Attributes
core::Size	target_residue_

utility::vector1< bool >	residue_types_

core::Real	distance_threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 31 of file NeighborTypeFilter.hh.

Constructor & Destructor Documentation

protocols::simple_filters::NeighborTypeFilter::NeighborTypeFilter ( )

inline

Definition at line 34 of file NeighborTypeFilter.hh.

Referenced by clone(), and fresh_instance().

protocols::simple_filters::NeighborTypeFilter::NeighborTypeFilter	(	core::Size const	target_residue,
		utility::vector1< bool > const	residue_types,
		core::Real const	distance_threshold
	)

inline

Definition at line 35 of file NeighborTypeFilter.hh.

References distance_threshold_, residue_types_, and target_residue_.

protocols::simple_filters::NeighborTypeFilter::~NeighborTypeFilter ( )

virtual

Definition at line 37 of file NeighborTypeFilter.cc.

Member Function Documentation

bool protocols::simple_filters::NeighborTypeFilter::apply ( core::pose::Pose const & pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 58 of file NeighborTypeFilter.cc.

References compute(), core::conformation::Residue::name3(), protocols::simple_filters::neighbor_type_filter_tracer(), core::pose::Pose::residue(), and target_residue_.

void protocols::simple_filters::NeighborTypeFilter::clear ( )

inlinevirtual

used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual

Reimplemented from protocols::filters::Filter.

Definition at line 49 of file NeighborTypeFilter.hh.

References residue_types_.

filters::FilterOP protocols::simple_filters::NeighborTypeFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 43 of file NeighborTypeFilter.hh.

References NeighborTypeFilter().

std::vector< core::Size > protocols::simple_filters::NeighborTypeFilter::compute ( core::pose::Pose const & pose) const

Definition at line 89 of file NeighborTypeFilter.cc.

References core::conformation::Conformation::chain_begin(), core::pose::Pose::conformation(), core::kinematics::distance(), distance_threshold_, core::sequence::end, core::pose::Pose::residue(), residue_types_, protocols::loops::start, target_residue_, and core::pose::Pose::total_residue().

Referenced by apply(), report(), and report_sm().

filters::FilterOP protocols::simple_filters::NeighborTypeFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 46 of file NeighborTypeFilter.hh.

References NeighborTypeFilter().

void protocols::simple_filters::NeighborTypeFilter::parse_my_tag	(	utility::tag::TagPtr const	tag,
		protocols::moves::DataMap &	,
		filters::Filters_map const &	,
		protocols::moves::Movers_map const &	,
		core::pose::Pose const &	pose
	)