protocols::dna::DNABasepair Class Reference

#include <DNAParameters.hh>

Collaboration diagram for protocols::dna::DNABasepair:

Public Member Functions
	DNABasepair ()
	DNABasepair (utility::vector1< core::Real > const &init_values)
	DNABasepair (core::conformation::Residue const &rsd1, core::conformation::Residue const &rsd2)
core::Real	stretch () const
core::Real	stagger () const
core::Real	shear () const
core::Real	propeller () const
core::Real	opening () const
core::Real	buckle () const
void	stretch (core::Real in_value)
void	stagger (core::Real in_value)
void	shear (core::Real in_value)
void	propeller (core::Real in_value)
void	opening (core::Real in_value)
void	buckle (core::Real in_value)

Private Attributes
core::Real	stretch_
core::Real	stagger_
core::Real	shear_
core::Real	propeller_
core::Real	opening_
core::Real	buckle_

Detailed Description

Definition at line 72 of file DNAParameters.hh.

Constructor & Destructor Documentation

protocols::dna::DNABasepair::DNABasepair ( )

inline

Definition at line 74 of file DNAParameters.hh.

protocols::dna::DNABasepair::DNABasepair

(

utility::vector1< core::Real > const &

init_values)

Definition at line 76 of file DNAParameters.cc.

protocols::dna::DNABasepair::DNABasepair	(	core::conformation::Residue const &	rsd1,
		core::conformation::Residue const &	rsd2
	)

Definition at line 82 of file DNAParameters.cc.

References buckle_, core::scoring::dna::get_base_pair_params(), core::conformation::Residue::is_DNA(), opening_, propeller_, shear_, stagger_, and stretch_.

Member Function Documentation

core::Real protocols::dna::DNABasepair::buckle ( ) const

inline

Definition at line 86 of file DNAParameters.hh.

References buckle_.

void protocols::dna::DNABasepair::buckle ( core::Real  in_value)

inline

Definition at line 93 of file DNAParameters.hh.

References buckle_.

core::Real protocols::dna::DNABasepair::opening ( ) const

inline

Definition at line 85 of file DNAParameters.hh.

References opening_.

void protocols::dna::DNABasepair::opening ( core::Real  in_value)

inline

Definition at line 92 of file DNAParameters.hh.

References opening_.

core::Real protocols::dna::DNABasepair::propeller ( ) const

inline

Definition at line 84 of file DNAParameters.hh.

References propeller_.

void protocols::dna::DNABasepair::propeller ( core::Real  in_value)

inline

Definition at line 91 of file DNAParameters.hh.

References propeller_.

core::Real protocols::dna::DNABasepair::shear ( ) const

inline

Definition at line 83 of file DNAParameters.hh.

References shear_.

void protocols::dna::DNABasepair::shear ( core::Real  in_value)

inline

Definition at line 90 of file DNAParameters.hh.

References shear_.

core::Real protocols::dna::DNABasepair::stagger ( ) const

inline

Definition at line 82 of file DNAParameters.hh.

References stagger_.

void protocols::dna::DNABasepair::stagger ( core::Real  in_value)

inline

Definition at line 89 of file DNAParameters.hh.

References stagger_.

core::Real protocols::dna::DNABasepair::stretch ( ) const

inline

Definition at line 81 of file DNAParameters.hh.

References stretch_.

void protocols::dna::DNABasepair::stretch ( core::Real  in_value)

inline

Definition at line 88 of file DNAParameters.hh.

References stretch_.

Member Data Documentation

core::Real protocols::dna::DNABasepair::buckle_

private

Definition at line 101 of file DNAParameters.hh.

Referenced by buckle(), and DNABasepair().

core::Real protocols::dna::DNABasepair::opening_

private

Definition at line 100 of file DNAParameters.hh.

Referenced by DNABasepair(), and opening().

core::Real protocols::dna::DNABasepair::propeller_

private

Definition at line 99 of file DNAParameters.hh.

Referenced by DNABasepair(), and propeller().

core::Real protocols::dna::DNABasepair::shear_

private

Definition at line 98 of file DNAParameters.hh.

Referenced by DNABasepair(), and shear().

core::Real protocols::dna::DNABasepair::stagger_

private

Definition at line 97 of file DNAParameters.hh.

Referenced by DNABasepair(), and stagger().

core::Real protocols::dna::DNABasepair::stretch_

private

Definition at line 96 of file DNAParameters.hh.

Referenced by DNABasepair(), and stretch().

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The documentation for this class was generated from the following files:

• src/protocols/dna/DNAParameters.hh
• src/protocols/dna/DNAParameters.cc