protocols::frag_picker::scores::ABEGO_SS_Score Class Reference

#include <ABEGO_SS_Score.hh>

Inheritance diagram for protocols::frag_picker::scores::ABEGO_SS_Score:

Collaboration diagram for protocols::frag_picker::scores::ABEGO_SS_Score:

Public Member Functions
	ABEGO_SS_Score (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string prediction_file_name, Size longest_vall_chunk)
	~ABEGO_SS_Score ()
void	do_caching (VallChunkOP)
bool	cached_score (FragmentCandidateOP f, FragmentScoreMapOP empty_map)
void	clean_up ()
virtual bool	score (FragmentCandidateOP, FragmentScoreMapOP)
	Computes the score. More...
Public Member Functions inherited from protocols::frag_picker::scores::CachingScoringMethod
	CachingScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoringMethod
	FragmentScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
std::string &	get_score_name ()
	Returns a name of this scoring method. More...
Size	get_id ()
	Returns an integer index assigned to this scoring method by a scoring manager. More...
void	set_id (Size id)
	Sets a new integer index for this scoring method. More...
Size	get_priority ()
	Returns a priority of this scoring method. More...
Real	get_min_allowed_score ()
	Returns the lowest acceptable score value for this scoring method. More...
bool	get_use_lowest ()
	Returns the boolean choice on using the above lowest acceptable score value. More...
void	set_min_allowed_score (Real lowest_acceptable_value)
	Sets a new value of the lowest acceptable score. More...

Private Attributes
Size	query_len_
Size	n_classes_
utility::vector1 < quota::ABEGO_SS_MapOP >	maps_
utility::vector1 < utility::vector1< Real > >	ratios_
std::string	cached_scores_id_
Matrix	scores_

Additional Inherited Members
Protected Attributes inherited from protocols::frag_picker::scores::FragmentScoringMethod
Size	id_
Size	priority_
std::string	name_
Real	lowest_acceptable_value_
bool	use_lowest_

Detailed Description

Definition at line 43 of file ABEGO_SS_Score.hh.

Constructor & Destructor Documentation

protocols::frag_picker::scores::ABEGO_SS_Score::ABEGO_SS_Score ( Size  priority, Real  lowest_acceptable_value, bool  use_lowest, std::string  prediction_file_name, Size  longest_vall_chunk  )

inline

Definition at line 46 of file ABEGO_SS_Score.hh.

References protocols::frag_picker::quota::ABEGO_SS_Config::get_pool_bins(), maps_, n_classes_, protocols::frag_picker::quota::ABEGO_SS_Config::n_columns(), protocols::frag_picker::quota::ABEGO_SS_Config::probability(), query_len_, ratios_, scores_, and protocols::frag_picker::quota::ABEGO_SS_Config::size().

protocols::frag_picker::scores::ABEGO_SS_Score::~ABEGO_SS_Score ( )

inline

Definition at line 68 of file ABEGO_SS_Score.hh.

Member Function Documentation

bool protocols::frag_picker::scores::ABEGO_SS_Score::cached_score ( FragmentCandidateOP  f, FragmentScoreMapOP  empty_map  )

virtual

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

Definition at line 105 of file ABEGO_SS_Score.cc.

References cached_scores_id_, do_caching(), protocols::frag_picker::scores::FragmentScoringMethod::id_, protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_, scores_, and protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_.

void protocols::frag_picker::scores::ABEGO_SS_Score::clean_up ( )

inlinevirtual

Implements protocols::frag_picker::scores::CachingScoringMethod.

Definition at line 72 of file ABEGO_SS_Score.hh.

void protocols::frag_picker::scores::ABEGO_SS_Score::do_caching ( VallChunkOP  chunk)

virtual

Implements protocols::frag_picker::scores::CachingScoringMethod.

Definition at line 66 of file ABEGO_SS_Score.cc.

References cached_scores_id_, maps_, query_len_, ratios_, scores_, and protocols::frag_picker::quota::torsion2big_bin_id().

Referenced by cached_score().

bool protocols::frag_picker::scores::ABEGO_SS_Score::score ( FragmentCandidateOP  f, FragmentScoreMapOP  empty_map  )

virtual

Computes the score.

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

Definition at line 43 of file ABEGO_SS_Score.cc.

References protocols::frag_picker::scores::FragmentScoringMethod::id_, protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_, maps_, ratios_, protocols::frag_picker::quota::torsion2big_bin_id(), and protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_.

Member Data Documentation

std::string protocols::frag_picker::scores::ABEGO_SS_Score::cached_scores_id_

private

Definition at line 82 of file ABEGO_SS_Score.hh.

Referenced by cached_score(), and do_caching().

utility::vector1<quota::ABEGO_SS_MapOP> protocols::frag_picker::scores::ABEGO_SS_Score::maps_

private

Definition at line 80 of file ABEGO_SS_Score.hh.

Referenced by ABEGO_SS_Score(), do_caching(), and score().

Size protocols::frag_picker::scores::ABEGO_SS_Score::n_classes_

private

Definition at line 79 of file ABEGO_SS_Score.hh.

Referenced by ABEGO_SS_Score().

Size protocols::frag_picker::scores::ABEGO_SS_Score::query_len_

private

Definition at line 78 of file ABEGO_SS_Score.hh.

Referenced by ABEGO_SS_Score(), and do_caching().

utility::vector1< utility::vector1<Real> > protocols::frag_picker::scores::ABEGO_SS_Score::ratios_

private

Definition at line 81 of file ABEGO_SS_Score.hh.

Referenced by ABEGO_SS_Score(), do_caching(), and score().

Matrix protocols::frag_picker::scores::ABEGO_SS_Score::scores_

private

Definition at line 83 of file ABEGO_SS_Score.hh.

Referenced by ABEGO_SS_Score(), cached_score(), and do_caching().

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/scores/ABEGO_SS_Score.hh
• src/protocols/frag_picker/scores/ABEGO_SS_Score.cc