DnaDesignDef.cc

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
// (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu.

/// @file
/// @brief
/// @author ashworth

#include <protocols/dna/DnaDesignDef.hh>

#include <core/types.hh>

#include <utility/vector1.hh>
#include <utility/string_util.hh>
using utility::string_split;

#include <sstream>
#include <string>

namespace protocols {
namespace dna {

using namespace core;

DnaDesignDef::~DnaDesignDef(){}

DnaDesignDef::DnaDesignDef( std::string const & strdef )
  : utility::pointer::ReferenceCount()
{
  // command-line dna_defs are of the format "C.501.ADE"
  // split on '.'
  utility::vector1< std::string > parts( string_split( strdef, '.' ) );
  utility::vector1< std::string >::const_iterator part( parts.begin() );
  chain = (*(part++))[0];
  std::istringstream inum_stream( *(part++) );
  inum_stream >> pdbpos;
  if ( part == parts.end() ) return;
  name3 = *part;
}

std::ostream & operator << ( std::ostream & os, DnaDesignDef const & def )
{
  os << def.chain << "." << def.pdbpos << "." << def.name3;
  return os;
}

std::ostream & operator << ( std::ostream & os, DnaDesignDefs const & defs )
{
  for ( DnaDesignDefs::const_iterator def( defs.begin() ), end( defs.end() );
        def != end; ++def ) {
    if ( def != defs.begin() ) os << " ";
    os << *def;
  }
  return os;
}

std::ostream & operator << ( std::ostream & os, DnaDesignDefOPs const & defs )
{
  for ( DnaDesignDefOPs::const_iterator def( defs.begin() ), end( defs.end() );
        def != end; ++def ) {
    if ( def != defs.begin() ) os << " ";
    os << **def;
  }
  return os;
}

} // namespace dna
} // namespace protocols