protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo Class Reference

helper class to allow for removal of covalent constraints More...

#include <EnzConstraintParameters.hh>

Inheritance diagram for protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo:

Collaboration diagram for protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo:

Public Member Functions
	CovalentConnectionReplaceInfo (std::string resA_base_in, std::string resB_base_in, std::string resA_var_in, std::string resB_var_in, core::Size Apos_in, core::Size Bpos_in, core::chemical::ResidueTypeSetCAP restype_set_in)
	CovalentConnectionReplaceInfo (CovalentConnectionReplaceInfo const &other)
virtual	~CovalentConnectionReplaceInfo ()
void	remove_covalent_connection_from_pose (core::pose::Pose &pose) const
void	remap_resid (core::id::SequenceMapping const &smap)

Private Attributes
std::string	resA_basename_
std::string	resB_basename_
std::string	resA_varname_
std::string	resB_varname_
std::string	resA_modname_
std::string	resB_modname_
core::Size	resA_seqpos_
core::Size	resB_seqpos_
core::chemical::ResidueTypeSetCAP	restype_set_

Detailed Description

helper class to allow for removal of covalent constraints

Definition at line 58 of file EnzConstraintParameters.hh.

Constructor & Destructor Documentation

protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::CovalentConnectionReplaceInfo	(	std::string	resA_base_in,
		std::string	resB_base_in,
		std::string	resA_var_in,
		std::string	resB_var_in,
		core::Size	Apos_in,
		core::Size	Bpos_in,
		core::chemical::ResidueTypeSetCAP	restype_set_in
	)

Definition at line 85 of file EnzConstraintParameters.cc.

protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::CovalentConnectionReplaceInfo

(

CovalentConnectionReplaceInfo const &

other)

Definition at line 102 of file EnzConstraintParameters.cc.

protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::~CovalentConnectionReplaceInfo ( )

virtual

Definition at line 111 of file EnzConstraintParameters.cc.

Member Function Documentation

void protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::remap_resid

(

core::id::SequenceMapping const &

smap)

Definition at line 153 of file EnzConstraintParameters.cc.

References resA_seqpos_, and resB_seqpos_.

void protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::remove_covalent_connection_from_pose

(

core::pose::Pose &

pose)

const

Definition at line 114 of file EnzConstraintParameters.cc.

References core::pose::add_variant_type_to_pose_residue(), protocols::toolbox::match_enzdes_util::replace_residue_keeping_all_atom_positions(), resA_basename_, resA_modname_, resA_seqpos_, resA_varname_, resB_basename_, resB_modname_, resB_seqpos_, resB_varname_, core::pose::Pose::residue_type(), core::chemical::residue_type_base_name(), restype_set_, and core::chemical::ResidueType::variant_types().

Member Data Documentation

std::string protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resA_basename_

private

Definition at line 84 of file EnzConstraintParameters.hh.

Referenced by remove_covalent_connection_from_pose().

std::string protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resA_modname_

private

Definition at line 86 of file EnzConstraintParameters.hh.

Referenced by remove_covalent_connection_from_pose().

core::Size protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resA_seqpos_

private

Definition at line 88 of file EnzConstraintParameters.hh.

Referenced by remap_resid(), and remove_covalent_connection_from_pose().

std::string protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resA_varname_

private

Definition at line 85 of file EnzConstraintParameters.hh.

Referenced by remove_covalent_connection_from_pose().

std::string protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resB_basename_

private

Definition at line 84 of file EnzConstraintParameters.hh.

Referenced by remove_covalent_connection_from_pose().

std::string protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resB_modname_

private

Definition at line 86 of file EnzConstraintParameters.hh.

Referenced by remove_covalent_connection_from_pose().

core::Size protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resB_seqpos_

private

Definition at line 88 of file EnzConstraintParameters.hh.

Referenced by remap_resid(), and remove_covalent_connection_from_pose().

std::string protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::resB_varname_

private

Definition at line 85 of file EnzConstraintParameters.hh.

Referenced by remove_covalent_connection_from_pose().

core::chemical::ResidueTypeSetCAP protocols::toolbox::match_enzdes_util::CovalentConnectionReplaceInfo::restype_set_

private

Definition at line 89 of file EnzConstraintParameters.hh.

Referenced by remove_covalent_connection_from_pose().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/match_enzdes_util/EnzConstraintParameters.hh
• src/protocols/toolbox/match_enzdes_util/EnzConstraintParameters.cc