protocols::checkpoint Namespace Reference

Classes
class	Timer
	: singleton checkpoint timer class More...
class	FileBuffer
class	CheckPointer

Typedefs
typedef utility::pointer::owning_ptr < CheckPointer >	CheckPointerOP
typedef utility::pointer::owning_ptr < CheckPointer const >	CheckPointerCOP

Functions
void	checkpoint_with_interval (const int interval_in)
basic::Tracer	TR ("protocols::checkpoint")
bool	pose_to_binary_silent_file (std::ostream &output, const std::string &tag, const pose::Pose &pose)
bool	pose_from_binary_silent_file (const std::string &filename, const std::string &tag, pose::Pose &pose, bool fullatom)

Typedef Documentation

typedef utility::pointer::owning_ptr< CheckPointer const > protocols::checkpoint::CheckPointerCOP

Definition at line 29 of file CheckPointer.fwd.hh.

typedef utility::pointer::owning_ptr< CheckPointer > protocols::checkpoint::CheckPointerOP

Definition at line 25 of file CheckPointer.fwd.hh.

Function Documentation

void protocols::checkpoint::checkpoint_with_interval

(

const int

interval_in)

Definition at line 28 of file Checkpoint.cc.

References protocols::checkpoint::Timer::instance(), and protocols::checkpoint::Timer::set_interval().

bool protocols::checkpoint::pose_from_binary_silent_file	(	const std::string &	filename,
		const std::string &	tag,
		pose::Pose &	pose,
		bool	fullatom
	)

Definition at line 119 of file CheckPointer.cc.

References core::io::silent::SilentFileData::begin(), core::chemical::CENTROID, core::pose::Pose::clear(), core::sequence::end, core::io::silent::SilentFileData::end(), core::chemical::FA_STANDARD, core::chemical::ChemicalManager::get_instance(), core::io::silent::SilentFileData::read_file(), and core::chemical::ChemicalManager::residue_type_set().

Referenced by protocols::checkpoint::CheckPointer::recover_checkpoint().

bool protocols::checkpoint::pose_to_binary_silent_file	(	std::ostream &	output,
		const std::string &	tag,
		const pose::Pose &	pose
	)

Definition at line 106 of file CheckPointer.cc.

References core::io::silent::BinaryProteinSilentStruct::fill_struct().

Referenced by protocols::checkpoint::CheckPointer::checkpoint().

basic::Tracer protocols::checkpoint::TR

(

"protocols::checkpoint"

)

Referenced by protocols::checkpoint::CheckPointer::checkpoint(), protocols::checkpoint::CheckPointer::clear_checkpoints(), protocols::checkpoint::CheckPointer::debug(), and protocols::checkpoint::CheckPointer::recover_checkpoint().