protocols::toolbox::GreedyKCenter Class Reference

Greedy K-Center Clustering Algorithm. More...

#include <KCluster.hh>

Inheritance diagram for protocols::toolbox::GreedyKCenter:

Collaboration diagram for protocols::toolbox::GreedyKCenter:

Public Member Functions
	GreedyKCenter ()
bool	whoami ()
Real	get_threshold ()
void	init (KClusterElementOP, Size first=0)
Real	assign (KClusterElementOP, KClusterData &)
void	update (KClusterElementOP, KClusterData &)
void	set_threshold (Real)
Public Member Functions inherited from protocols::toolbox::KCluster
	KCluster ()
virtual	~KCluster ()
void	cluster (KClusterElementOP, KClusterData &, Size first=0)
void	set_ncluster (Size nc)

Protected Attributes
Real	radius_
Protected Attributes inherited from protocols::toolbox::KCluster
Size	n_cluster_

Additional Inherited Members
Public Types inherited from protocols::toolbox::KCluster
typedef ObjexxFCL::FArray2_double	FA2d
typedef ObjexxFCL::FArray2P_double	FA2Pd
typedef ObjexxFCL::FArray2D_double	FA2Dd

Detailed Description

Greedy K-Center Clustering Algorithm.

Note

"A Fast Geometric Clustering Method on Conformation Space of Biomolecules" Jian Sun, Yuan Yao, Xuhui Huang, Vijay Pande, Gunnar Carlsson, Leonidas J. Guibas

Definition at line 317 of file KCluster.hh.

Constructor & Destructor Documentation

protocols::toolbox::GreedyKCenter::GreedyKCenter

(

)

Definition at line 788 of file KCluster.cc.

References radius_.

Member Function Documentation

Real protocols::toolbox::GreedyKCenter::assign ( KClusterElementOP  c, KClusterData &  d  )

virtual

Implements protocols::toolbox::KCluster.

Definition at line 832 of file KCluster.cc.

References protocols::toolbox::KClusterData::dist_square().

Real protocols::toolbox::GreedyKCenter::get_threshold ( )

virtual

Implements protocols::toolbox::KCluster.

Definition at line 803 of file KCluster.cc.

References radius_.

void protocols::toolbox::GreedyKCenter::init ( KClusterElementOP  c, Size  first = 0  )

virtual

Implements protocols::toolbox::KCluster.

Definition at line 813 of file KCluster.cc.

References protocols::RG(), and protocols::TR().

void protocols::toolbox::GreedyKCenter::set_threshold ( Real  r)

virtual

Implements protocols::toolbox::KCluster.

Definition at line 808 of file KCluster.cc.

References radius_.

void protocols::toolbox::GreedyKCenter::update ( KClusterElementOP  c, KClusterData &    )

virtual

Implements protocols::toolbox::KCluster.

Definition at line 877 of file KCluster.cc.

References protocols::toolbox::KCluster::n_cluster_.

bool protocols::toolbox::GreedyKCenter::whoami ( )

virtual

Implements protocols::toolbox::KCluster.

Definition at line 797 of file KCluster.cc.

References protocols::TR().

Member Data Documentation

Real protocols::toolbox::GreedyKCenter::radius_

protected

Definition at line 329 of file KCluster.hh.

Referenced by get_threshold(), GreedyKCenter(), and set_threshold().

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The documentation for this class was generated from the following files:

• src/protocols/toolbox/KCluster.hh
• src/protocols/toolbox/KCluster.cc