protocols::frag_picker::DiversifyCrmsdByClustering Class Reference

selects fragments by running several selectors More...

#include <DiversifyCrmsdByClustering.hh>

Inheritance diagram for protocols::frag_picker::DiversifyCrmsdByClustering:

Collaboration diagram for protocols::frag_picker::DiversifyCrmsdByClustering:

Public Member Functions
	DiversifyCrmsdByClustering (Size frags_per_pos)
	Constructor sets the desired number of fragments and crmsd cutoff. More...
virtual void	select_fragments (ScoredCandidatesVector1 const &, ScoredCandidatesVector1 &)
	Selects desired number of fragments from a given set of candidates. More...
virtual	~DiversifyCrmsdByClustering ()
Public Member Functions inherited from protocols::frag_picker::FragmentSelectingRule
	FragmentSelectingRule (Size frags_per_pos)
	Constructor sets the desired number of fragments. More...
Size	frags_per_pos ()
	Says how many fragments will be selected for each position in a query sequence. More...
virtual	~FragmentSelectingRule ()

Private Member Functions
void	copy_coordinates (FragmentCandidateOP src, FArray2D_double &dst)

Private Attributes
Real	resulting_cutoff_
utility::vector1< FArray2D_double >	xyz_
FArray1D_double	weights_

Detailed Description

selects fragments by running several selectors

Definition at line 39 of file DiversifyCrmsdByClustering.hh.

Constructor & Destructor Documentation

protocols::frag_picker::DiversifyCrmsdByClustering::DiversifyCrmsdByClustering ( Size  frags_per_pos)

inline

Constructor sets the desired number of fragments and crmsd cutoff.

Definition at line 43 of file DiversifyCrmsdByClustering.hh.

virtual protocols::frag_picker::DiversifyCrmsdByClustering::~DiversifyCrmsdByClustering ( )

inlinevirtual

Definition at line 48 of file DiversifyCrmsdByClustering.hh.

Member Function Documentation

void protocols::frag_picker::DiversifyCrmsdByClustering::copy_coordinates ( FragmentCandidateOP  src, FArray2D_double &  dst  )

private

Definition at line 39 of file DiversifyCrmsdByClustering.cc.

References protocols::kinmatch::xyz().

void protocols::frag_picker::DiversifyCrmsdByClustering::select_fragments ( ScoredCandidatesVector1 const &  in, ScoredCandidatesVector1 &  out  )

virtual

Selects desired number of fragments from a given set of candidates.

Implements protocols::frag_picker::FragmentSelectingRule.

Definition at line 55 of file DiversifyCrmsdByClustering.cc.

References protocols::frag_picker::trDiversifyCrmsdByClustering().

Member Data Documentation

Real protocols::frag_picker::DiversifyCrmsdByClustering::resulting_cutoff_

private

Definition at line 53 of file DiversifyCrmsdByClustering.hh.

FArray1D_double protocols::frag_picker::DiversifyCrmsdByClustering::weights_

private

Definition at line 55 of file DiversifyCrmsdByClustering.hh.

utility::vector1<FArray2D_double> protocols::frag_picker::DiversifyCrmsdByClustering::xyz_

private

Definition at line 54 of file DiversifyCrmsdByClustering.hh.

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/DiversifyCrmsdByClustering.hh
• src/protocols/frag_picker/DiversifyCrmsdByClustering.cc