protocols::fldsgn::filters::HelixKinkFilter Class Reference

#include <HelixKinkFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::HelixKinkFilter:

Collaboration diagram for protocols::fldsgn::filters::HelixKinkFilter:

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef std::string	String
typedef core::Real	Real
typedef core::Size	Size
typedef core::pose::Pose	Pose
typedef utility::tag::TagPtr	TagPtr
typedef protocols::filters::Filters_map	Filters_map
typedef protocols::moves::DataMap	DataMap
typedef protocols::moves::Movers_map	Movers_map

Public Member Functions
	HelixKinkFilter ()
	HelixKinkFilter (HelixKinkFilter const &rval)
virtual	~HelixKinkFilter ()
virtual FilterOP	clone () const
virtual FilterOP	fresh_instance () const
virtual std::string	name () const
virtual void	parse_my_tag (TagPtr const tag, DataMap &, Filters_map const &, Movers_map const &, Pose const &)
	parse xml More...
virtual bool	apply (Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)

Private Attributes
Real	bend_angle_
String	secstruct_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

Definition at line 45 of file HelixKinkFilter.hh.

Member Typedef Documentation

typedef protocols::moves::DataMap protocols::fldsgn::filters::HelixKinkFilter::DataMap

Definition at line 61 of file HelixKinkFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::HelixKinkFilter::Filter

Definition at line 50 of file HelixKinkFilter.hh.

typedef protocols::filters::FilterOP protocols::fldsgn::filters::HelixKinkFilter::FilterOP

Definition at line 51 of file HelixKinkFilter.hh.

typedef protocols::filters::Filters_map protocols::fldsgn::filters::HelixKinkFilter::Filters_map

Definition at line 60 of file HelixKinkFilter.hh.

typedef protocols::moves::Movers_map protocols::fldsgn::filters::HelixKinkFilter::Movers_map

Definition at line 62 of file HelixKinkFilter.hh.

typedef core::pose::Pose protocols::fldsgn::filters::HelixKinkFilter::Pose

Definition at line 57 of file HelixKinkFilter.hh.

typedef core::Real protocols::fldsgn::filters::HelixKinkFilter::Real

Definition at line 54 of file HelixKinkFilter.hh.

typedef core::Size protocols::fldsgn::filters::HelixKinkFilter::Size

Definition at line 55 of file HelixKinkFilter.hh.

typedef std::string protocols::fldsgn::filters::HelixKinkFilter::String

Definition at line 53 of file HelixKinkFilter.hh.

typedef protocols::filters::Filter protocols::fldsgn::filters::HelixKinkFilter::Super

Definition at line 49 of file HelixKinkFilter.hh.

typedef utility::tag::TagPtr protocols::fldsgn::filters::HelixKinkFilter::TagPtr

Definition at line 59 of file HelixKinkFilter.hh.

Constructor & Destructor Documentation

protocols::fldsgn::filters::HelixKinkFilter::HelixKinkFilter

(

)

Definition at line 54 of file HelixKinkFilter.cc.

Referenced by clone(), and fresh_instance().

protocols::fldsgn::filters::HelixKinkFilter::HelixKinkFilter

(

HelixKinkFilter const &

rval)

Definition at line 62 of file HelixKinkFilter.cc.

virtual protocols::fldsgn::filters::HelixKinkFilter::~HelixKinkFilter ( )

inlinevirtual

Definition at line 74 of file HelixKinkFilter.hh.

Member Function Documentation

bool protocols::fldsgn::filters::HelixKinkFilter::apply ( Pose const &  pose) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Definition at line 72 of file HelixKinkFilter.cc.

References bend_angle_, protocols::fldsgn::topology::check_kink_helix(), core::scoring::Energies::data(), core::sequence::end, core::pose::Pose::energies(), core::scoring::EnergiesCacheableDataType::HBOND_SET, core::pose::Pose::secstruct(), secstruct_, and protocols::fldsgn::TR().

virtual FilterOP protocols::fldsgn::filters::HelixKinkFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 81 of file HelixKinkFilter.hh.

References HelixKinkFilter().

virtual FilterOP protocols::fldsgn::filters::HelixKinkFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

Definition at line 84 of file HelixKinkFilter.hh.

References HelixKinkFilter().

virtual std::string protocols::fldsgn::filters::HelixKinkFilter::name ( ) const

inlinevirtual

Reimplemented from protocols::filters::Filter.

Definition at line 91 of file HelixKinkFilter.hh.

void protocols::fldsgn::filters::HelixKinkFilter::parse_my_tag ( TagPtr const  tag, DataMap &  , Filters_map const &  , Movers_map const &  , Pose const &    )

virtual

parse xml

Reimplemented from protocols::filters::Filter.

Definition at line 131 of file HelixKinkFilter.cc.

References bend_angle_, protocols::jd2::parser::BluePrint::secstruct(), and secstruct_.

Member Data Documentation

Real protocols::fldsgn::filters::HelixKinkFilter::bend_angle_

private

Definition at line 116 of file HelixKinkFilter.hh.

Referenced by apply(), and parse_my_tag().

String protocols::fldsgn::filters::HelixKinkFilter::secstruct_

private

Definition at line 119 of file HelixKinkFilter.hh.

Referenced by apply(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/protocols/fldsgn/filters/HelixKinkFilter.hh
• src/protocols/fldsgn/filters/HelixKinkFilter.cc