#include <DockTaskFactory.hh>

Inheritance diagram for protocols::docking::DockTaskFactory:

Collaboration diagram for protocols::docking::DockTaskFactory:

Public Member Functions
	DockTaskFactory ()
	Default constructor. More...

	DockTaskFactory (DockTaskFactory const &old_instance)

virtual	~DockTaskFactory ()

void	create_and_attach_task_factory (DockingHighResOP docker, core::pose::Pose const &pose) const
	Creates an appropriate TaskFactory based on command line options and attach it to a DockingHighResOP Two arguments: DockingHighResOP and a pose. More...

void	set_default ()
	Sets booleans to default values. More...

void	register_options ()
	Associates relevant options with the DockTaskFactory class. More...

void	init_from_options ()
	Assigns user specified values to members using command line options. More...

void	set_norepack1 (bool norepack1)

void	set_norepack2 (bool norepack2)

void	set_design_chains (utility::vector1< char > design_chains)

void	set_additional_task_operarations (utility::vector1< core::pack::task::operation::TaskOperationOP > additional_task_operations)

void	add_additional_task_operaration (core::pack::task::operation::TaskOperationOP task_operation)

utility::vector1 < core::pack::task::operation::TaskOperationOP >	get_additional_task_operarations ()

void	set_interface_definition_task_operation (protocols::toolbox::task_operations::InterfaceTaskOperationOP interface_definition)

bool	get_norepack1 () const

bool	get_norepack2 () const

void	set_prepack_only (bool prepack_only)

Private Attributes
bool	resfile_

bool	norepack1_

bool	norepack2_

utility::vector1< char >	design_chains_

utility::vector1 < core::pack::task::operation::TaskOperationOP >	additional_task_operations_

bool	prepack_only_

toolbox::task_operations::InterfaceTaskOperationOP	restrict_to_interface_

Detailed Description

Definition at line 47 of file DockTaskFactory.hh.

Constructor & Destructor Documentation

protocols::docking::DockTaskFactory::DockTaskFactory ( )

Default constructor.

Definition at line 70 of file DockTaskFactory.cc.

References init_from_options(), register_options(), and set_default().

protocols::docking::DockTaskFactory::DockTaskFactory ( DockTaskFactory const & old_instance)

Definition at line 77 of file DockTaskFactory.cc.

References design_chains_, norepack1_, norepack2_, prepack_only_, resfile_, and restrict_to_interface_.

protocols::docking::DockTaskFactory::~DockTaskFactory ( )

virtual

Definition at line 87 of file DockTaskFactory.cc.

Member Function Documentation

void protocols::docking::DockTaskFactory::add_additional_task_operaration ( core::pack::task::operation::TaskOperationOP task_operation)

Definition at line 150 of file DockTaskFactory.cc.

References additional_task_operations_.

void protocols::docking::DockTaskFactory::create_and_attach_task_factory	(	DockingHighResOP	docker,
		core::pose::Pose const &	pose
	)		const

Creates an appropriate TaskFactory based on command line options and attach it to a DockingHighResOP Two arguments: DockingHighResOP and a pose.

Definition at line 166 of file DockTaskFactory.cc.

References additional_task_operations_, core::kinematics::FoldTree::cutpoint_by_jump(), design_chains_, core::pose::Pose::fold_tree(), norepack1_, norepack2_, core::pose::Pose::num_jump(), core::pose::Pose::pdb_info(), prepack_only_, resfile_, and restrict_to_interface_.

utility::vector1< core::pack::task::operation::TaskOperationOP > protocols::docking::DockTaskFactory::get_additional_task_operarations ( )

Definition at line 155 of file DockTaskFactory.cc.

References additional_task_operations_.

bool protocols::docking::DockTaskFactory::get_norepack1 ( ) const

inline

Definition at line 84 of file DockTaskFactory.hh.

References norepack1_.

bool protocols::docking::DockTaskFactory::get_norepack2 ( ) const

inline

Definition at line 85 of file DockTaskFactory.hh.

References norepack2_.

void protocols::docking::DockTaskFactory::init_from_options ( )

Assigns user specified values to members using command line options.

Definition at line 111 of file DockTaskFactory.cc.

References design_chains_, resfile_, set_norepack1(), and set_norepack2().

Referenced by DockTaskFactory().

void protocols::docking::DockTaskFactory::register_options ( )

Associates relevant options with the DockTaskFactory class.

Definition at line 137 of file DockTaskFactory.cc.

Referenced by DockTaskFactory().

void protocols::docking::DockTaskFactory::set_additional_task_operarations ( utility::vector1< core::pack::task::operation::TaskOperationOP > additional_task_operations)

Definition at line 145 of file DockTaskFactory.cc.

References additional_task_operations_.

void protocols::docking::DockTaskFactory::set_default ( )

Sets booleans to default values.

Definition at line 90 of file DockTaskFactory.cc.

References additional_task_operations_, design_chains_, norepack1_, norepack2_, prepack_only_, resfile_, and restrict_to_interface_.

Referenced by DockTaskFactory().

void protocols::docking::DockTaskFactory::set_design_chains ( utility::vector1< char > design_chains)

inline

Definition at line 78 of file DockTaskFactory.hh.

References design_chains_.

void protocols::docking::DockTaskFactory::set_interface_definition_task_operation ( protocols::toolbox::task_operations::InterfaceTaskOperationOP interface_definition)

Definition at line 160 of file DockTaskFactory.cc.

void protocols::docking::DockTaskFactory::set_norepack1 ( bool norepack1)

inline

Definition at line 76 of file DockTaskFactory.hh.

References norepack1_.

Referenced by init_from_options().

void protocols::docking::DockTaskFactory::set_norepack2 ( bool norepack2)

inline

Definition at line 77 of file DockTaskFactory.hh.

References norepack2_.

Referenced by init_from_options().

void protocols::docking::DockTaskFactory::set_prepack_only ( bool prepack_only)