protocols::forge::components::BDRSegmentInfo Struct Reference

#include <BDRSegmentInfo.hh>

Collaboration diagram for protocols::forge::components::BDRSegmentInfo:

Public Types
typedef protocols::forge::build::Interval	Interval
typedef std::string	String

Public Member Functions
	BDRSegmentInfo ()
	default constructor More...
	BDRSegmentInfo (Interval const &ival, String const &secstruct, String const &aa_build=String(), String const &aa_dr=String())
	value constructor More...
	~BDRSegmentInfo ()

Public Attributes
Interval	interval
	interval specifying the residues to remodel More...
String	ss
	secondary structure string, also specifies the length of the new section More...
String	aa_during_build
	annotated amino acid string, specifies the amino acid sequence of the new section during centroid build; can be empty More...
String	aa_during_design_refine
	annotated amino acid string, specifies the amino acid sequence of the new section during design-refine; can be empty More...

Detailed Description

Definition at line 45 of file BDRSegmentInfo.hh.

Member Typedef Documentation

typedef protocols::forge::build::Interval protocols::forge::components::BDRSegmentInfo::Interval

Definition at line 48 of file BDRSegmentInfo.hh.

typedef std::string protocols::forge::components::BDRSegmentInfo::String

Definition at line 50 of file BDRSegmentInfo.hh.

Constructor & Destructor Documentation

protocols::forge::components::BDRSegmentInfo::BDRSegmentInfo ( )

inline

default constructor

Definition at line 55 of file BDRSegmentInfo.hh.

protocols::forge::components::BDRSegmentInfo::BDRSegmentInfo ( Interval const &  ival, String const &  secstruct, String const &  aa_build = String(), String const &  aa_dr = String()  )

inline

value constructor

Definition at line 60 of file BDRSegmentInfo.hh.

References aa_during_build, aa_during_design_refine, core::pose::annotated_to_oneletter_sequence(), and ss.

protocols::forge::components::BDRSegmentInfo::~BDRSegmentInfo ( )

inline

Definition at line 85 of file BDRSegmentInfo.hh.

Member Data Documentation

String protocols::forge::components::BDRSegmentInfo::aa_during_build

annotated amino acid string, specifies the amino acid sequence of the new section during centroid build; can be empty

Remarks

if defined, the one-letter aa string must be equal in length to the secondary structure string

Definition at line 101 of file BDRSegmentInfo.hh.

Referenced by BDRSegmentInfo().

String protocols::forge::components::BDRSegmentInfo::aa_during_design_refine

annotated amino acid string, specifies the amino acid sequence of the new section during design-refine; can be empty

Remarks

if defined, the one-letter aa string must be equal in length to the secondary structure string

Definition at line 108 of file BDRSegmentInfo.hh.

Referenced by BDRSegmentInfo().

Interval protocols::forge::components::BDRSegmentInfo::interval

interval specifying the residues to remodel

Definition at line 89 of file BDRSegmentInfo.hh.

String protocols::forge::components::BDRSegmentInfo::ss

secondary structure string, also specifies the length of the new section

Definition at line 94 of file BDRSegmentInfo.hh.

Referenced by BDRSegmentInfo().

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The documentation for this struct was generated from the following file:

• src/protocols/forge/components/BDRSegmentInfo.hh