protocols::protein_interface_design::movers::Splice Member List

This is the complete list of members for protocols::protein_interface_design::movers::Splice, including all inherited members.

add_sequence_constraints(core::pose::Pose &pose)	protocols::protein_interface_design::movers::Splice
apply(Pose &pose)	protocols::protein_interface_design::movers::Splice	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
ccd(bool const c)	protocols::protein_interface_design::movers::Splice	inline
ccd() const	protocols::protein_interface_design::movers::Splice	inline
ccd_	protocols::protein_interface_design::movers::Splice	private
checkpointing_file() const	protocols::protein_interface_design::movers::Splice
checkpointing_file(std::string const cf)	protocols::protein_interface_design::movers::Splice
checkpointing_file_	protocols::protein_interface_design::movers::Splice	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::protein_interface_design::movers::Splice	virtual
create()	protocols::moves::Mover	virtual
current_dbase_entry_	protocols::protein_interface_design::movers::Splice	private
cut_secondarystruc(bool const r)	protocols::protein_interface_design::movers::Splice	inline
cut_secondarystruc() const	protocols::protein_interface_design::movers::Splice	inline
cut_secondarystruc_	protocols::protein_interface_design::movers::Splice	private
database_entry() const	protocols::protein_interface_design::movers::Splice	inline
database_entry(core::Size const d)	protocols::protein_interface_design::movers::Splice	inline
database_entry_	protocols::protein_interface_design::movers::Splice	private
database_pdb_entry(std::string const s)	protocols::protein_interface_design::movers::Splice	inline
database_pdb_entry() const	protocols::protein_interface_design::movers::Splice	inline
database_pdb_entry_	protocols::protein_interface_design::movers::Splice	private
dbase_begin() const	protocols::protein_interface_design::movers::Splice
dbase_const_iterator typedef	protocols::protein_interface_design::movers::Splice
dbase_end() const	protocols::protein_interface_design::movers::Splice
dbase_iterate() const	protocols::protein_interface_design::movers::Splice	inline
dbase_iterate(bool const d)	protocols::protein_interface_design::movers::Splice	inline
dbase_iterate_	protocols::protein_interface_design::movers::Splice	private
dbase_subset_	protocols::protein_interface_design::movers::Splice	private
delta_lengths(utility::vector1< int > const dl)	protocols::protein_interface_design::movers::Splice	inline
delta_lengths()	protocols::protein_interface_design::movers::Splice	inline
delta_lengths_	protocols::protein_interface_design::movers::Splice	private
design() const	protocols::protein_interface_design::movers::Splice	inline
design(bool const d)	protocols::protein_interface_design::movers::Splice	inline
design_	protocols::protein_interface_design::movers::Splice	private
design_task_factory() const	protocols::protein_interface_design::movers::Splice
design_task_factory(core::pack::task::TaskFactoryOP tf)	protocols::protein_interface_design::movers::Splice
design_task_factory_	protocols::protein_interface_design::movers::Splice	private
end_dbase_subset_	protocols::protein_interface_design::movers::Splice	private
equal_length(bool const e)	protocols::protein_interface_design::movers::Splice	inline
equal_length() const	protocols::protein_interface_design::movers::Splice	inline
equal_length_	protocols::protein_interface_design::movers::Splice	private
Filters_map typedef	protocols::moves::Mover
find_dbase_entry(core::pose::Pose const &pose)	protocols::protein_interface_design::movers::Splice
first_pass_	protocols::protein_interface_design::movers::Splice	private
fold_tree(core::pose::Pose &pose, core::Size const start, core::Size const stop, core::Size const cut) const	protocols::protein_interface_design::movers::Splice
fresh_instance() const	protocols::protein_interface_design::movers::Splice	inlinevirtual
from_res(core::Size const f)	protocols::protein_interface_design::movers::Splice	inline
from_res() const	protocols::protein_interface_design::movers::Splice	inline
from_res_	protocols::protein_interface_design::movers::Splice	private
generate_sequence_profile()	protocols::protein_interface_design::movers::Splice
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::protein_interface_design::movers::Splice	virtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
load_from_checkpoint()	protocols::protein_interface_design::movers::Splice
load_pdb_segments_from_pose_comments(core::pose::Pose const &p)	protocols::protein_interface_design::movers::Splice
locked_res() const	protocols::protein_interface_design::movers::Splice
locked_res(core::Size const r)	protocols::protein_interface_design::movers::Splice
locked_res_	protocols::protein_interface_design::movers::Splice	private
locked_res_id(char const c)	protocols::protein_interface_design::movers::Splice
locked_res_id() const	protocols::protein_interface_design::movers::Splice
locked_res_id_	protocols::protein_interface_design::movers::Splice	private
loop_dbase_file_name() const	protocols::protein_interface_design::movers::Splice
loop_dbase_file_name(std::string const f)	protocols::protein_interface_design::movers::Splice
loop_dbase_file_name_	protocols::protein_interface_design::movers::Splice	private
loop_pdb_source(std::string const l)	protocols::protein_interface_design::movers::Splice
loop_pdb_source() const	protocols::protein_interface_design::movers::Splice
loop_pdb_source_	protocols::protein_interface_design::movers::Splice	private
modify_pdb_segments_with_current_segment(std::string const pdb_name)	protocols::protein_interface_design::movers::Splice
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
mover_tag_	protocols::protein_interface_design::movers::Splice	private
name()	protocols::moves::Mover	inlinestatic
operator=(Mover const &other)	protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)	protocols::protein_interface_design::movers::Splice	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
pdb_segments_	protocols::protein_interface_design::movers::Splice	private
poly_ala(bool const p)	protocols::protein_interface_design::movers::Splice	inline
poly_ala() const	protocols::protein_interface_design::movers::Splice	inline
poly_ala_	protocols::protein_interface_design::movers::Splice	private
Pose typedef	protocols::protein_interface_design::movers::Splice
PoseCOP typedef	protocols::moves::Mover
profile_weight_away_from_interface(core::Real const p)	protocols::protein_interface_design::movers::Splice
profile_weight_away_from_interface() const	protocols::protein_interface_design::movers::Splice
profile_weight_away_from_interface_	protocols::protein_interface_design::movers::Splice	private
randomize_cut(bool const r)	protocols::protein_interface_design::movers::Splice	inline
randomize_cut() const	protocols::protein_interface_design::movers::Splice	inline
randomize_cut_	protocols::protein_interface_design::movers::Splice	private
read_splice_segments(std::string const segment_type, std::string const segment_name, std::string const file_name)	protocols::protein_interface_design::movers::Splice
read_torsion_database()	protocols::protein_interface_design::movers::Splice
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
res_move(core::Size const r)	protocols::protein_interface_design::movers::Splice	inline
res_move() const	protocols::protein_interface_design::movers::Splice	inline
res_move_	protocols::protein_interface_design::movers::Splice	private
reset_status()	protocols::moves::Mover
retrieve_values()	protocols::protein_interface_design::movers::Splice	private
rms_cutoff() const	protocols::protein_interface_design::movers::Splice	inline
rms_cutoff(core::Real const r)	protocols::protein_interface_design::movers::Splice	inline
rms_cutoff_	protocols::protein_interface_design::movers::Splice	private
save_state(SerializableState &state)	protocols::moves::Mover	virtual
save_to_checkpoint() const	protocols::protein_interface_design::movers::Splice
save_values()	protocols::protein_interface_design::movers::Splice	private
saved_fold_tree_	protocols::protein_interface_design::movers::Splice	private
saved_from_res_	protocols::protein_interface_design::movers::Splice	private
saved_to_res_	protocols::protein_interface_design::movers::Splice	private
scorefxn(core::scoring::ScoreFunctionOP sf)	protocols::protein_interface_design::movers::Splice
scorefxn() const	protocols::protein_interface_design::movers::Splice
scorefxn_	protocols::protein_interface_design::movers::Splice	private
segment_type_	protocols::protein_interface_design::movers::Splice	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
source_pdb() const	protocols::protein_interface_design::movers::Splice	inline
source_pdb(std::string const s)	protocols::protein_interface_design::movers::Splice	inline
source_pdb_	protocols::protein_interface_design::movers::Splice	private
Splice()	protocols::protein_interface_design::movers::Splice
splice_filter() const	protocols::protein_interface_design::movers::Splice
splice_filter(protocols::filters::FilterOP f)	protocols::protein_interface_design::movers::Splice
splice_filter_	protocols::protein_interface_design::movers::Splice	private
splice_segments_	protocols::protein_interface_design::movers::Splice	private
start_pose_	protocols::protein_interface_design::movers::Splice	private
Strings typedef	protocols::moves::Mover
TagPtr typedef	protocols::moves::Mover
task_factory() const	protocols::protein_interface_design::movers::Splice
task_factory(core::pack::task::TaskFactoryOP tf)	protocols::protein_interface_design::movers::Splice
task_factory_	protocols::protein_interface_design::movers::Splice	private
template_file() const	protocols::protein_interface_design::movers::Splice	inline
template_file(std::string const s)	protocols::protein_interface_design::movers::Splice	inline
template_file_	protocols::protein_interface_design::movers::Splice	private
template_pose_	protocols::protein_interface_design::movers::Splice	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
to_res(core::Size const t)	protocols::protein_interface_design::movers::Splice	inline
to_res() const	protocols::protein_interface_design::movers::Splice	inline
to_res_	protocols::protein_interface_design::movers::Splice	private
torsion_database() const	protocols::protein_interface_design::movers::Splice	inline
torsion_database(utility::vector1< ResidueBBDofs > const d)	protocols::protein_interface_design::movers::Splice	inline
torsion_database_	protocols::protein_interface_design::movers::Splice	private
torsion_database_fname() const	protocols::protein_interface_design::movers::Splice	inline
torsion_database_fname(std::string const d)	protocols::protein_interface_design::movers::Splice	inline
torsion_database_fname_	protocols::protein_interface_design::movers::Splice	private
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
use_sequence_profiles_	protocols::protein_interface_design::movers::Splice	private
~Mover()	protocols::moves::Mover	virtual
~Splice()	protocols::protein_interface_design::movers::Splice	virtual